Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010604

Physical Location & Seq

Genomic Coordinates Forward (+)

1794217 .. 1795126

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG025700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTATTTTGTCCCCGTCTCTTCTTTGGTGTACGAGCAAACTGGTATTATCTGTCCGTATACTATCACTCTCCGGCTCGACCATTACAGGCCGGCCGTGGAGAGGATGCTCACTACTAGGTGGCTGGGCACCGAAATAACGATTGAGCTGGTGCAGAAGGTTTTTACAAGGTCAGGATTTCGAATCGAACACATGACTTTAATCGAGCCCGGTCTGGGTTATGTTTTGTTTCAAAGTGATTTTGCTATTGCAAATCTAATGTTTGGGAAAAGCAAGATGGAGTATACTCTAGGGGATGAGAACGACAACTCAATTCAACTGGGAATCCCGGAGAATCTCTTTCTGAACTTCGATTCAGCTATTCCTTACCCCGTCATAGTCAATGATGTGAAAGCCCACTTCGAAAGAGAGAAGTTCAATGTTCTGGGAGTGCAATTTCGCAAGGCTGAAGAGGTGGTGCCACGTTCTTGCTATGTTAGCCTAGAGAGAACCCCAGGTATTCTAACAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

19.52

Weight (kDa)

5.41

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1067100.v1.1 MD08G1067200.v1.1
prunus_persica	Prupe.1G457200_v2.0.a1 Prupe.1G457200_v2.0.a1
pyrus_communis	pycom08g05540 pycom08g05580 pycom15g05120
rosa_multiflora	Rmu_co7981604.1_g000001 Rmu_co8250275.1_g000001 Rmu_sc0032968.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072890
rosa_samantha	Rh5AG025300 Rh5AG025700 Rh5BG026800 Rh5CG028100 Rh5CG028200 Rh5CG028500 Rh5DG025400 Rh6DG505300 Rh6DG505400
rosa_wichuraiana	Rw5G002360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	128, 457
AccI	GTMKAC	2 cut(s)	59, 284
AcoI	YGGCCR	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	102, 215
AgsI	TTSAA	3 cut(s)	233, 317, 418
AjnI	CCWGG	1 cut(s)	493
AluBI	AGCT	2 cut(s)	148, 359
AluI	AGCT	2 cut(s)	148, 359
Alw26I	GTCTC	1 cut(s)	22
AoxI	GGCC	2 cut(s)	89, 93
AsuC2I	CCSGG	2 cut(s)	210, 329
AsuII	TTCGAA	2 cut(s)	181, 402
BaeGI	GKGCMC	1 cut(s)	131
BanI	GGYRCC	2 cut(s)	128, 457
BanII	GRGCYC	1 cut(s)	210
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	495
BcnI	CCSGG	2 cut(s)	210, 329
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	3 cut(s)	117, 290, 482
Bme1390I	CCNGG	3 cut(s)	210, 329, 495
BmiI	GGNNCC	2 cut(s)	130, 459
BmrFI	CCNGG	3 cut(s)	210, 329, 495
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	329
Bpu14I	TTCGAA	2 cut(s)	181, 402
BpuMI	CCSGG	2 cut(s)	210, 329
BsaJI	CCNNGG	2 cut(s)	96, 493
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 215
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	46, 324
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	2 cut(s)	96, 493
BseGI	GGATG	2 cut(s)	111, 301
BseLI	CCNNNNNNNGG	2 cut(s)	102, 215
BseNI	ACTGG	2 cut(s)	46, 324
BseSI	GKGCMC	1 cut(s)	131
BseX3I	CGGCCG	1 cut(s)	93
BseYI	CCCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	91, 95
BshNI	GGYRCC	2 cut(s)	128, 457
BsiEI	CGRYCG	1 cut(s)	96
BsiSI	CCGG	4 cut(s)	73, 92, 210, 329
BslI	CCNNNNNNNGG	2 cut(s)	102, 215
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	91, 95
Bsp119I	TTCGAA	2 cut(s)	181, 402
Bsp1286I	GDGCHC	2 cut(s)	131, 210
BspANI	GGCC	2 cut(s)	91, 95
BspLI	GGNNCC	2 cut(s)	130, 459
BspT104I	TTCGAA	2 cut(s)	181, 402
BspT107I	GGYRCC	2 cut(s)	128, 457
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	46, 324
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	96, 493
BssNAI	GTATAC	2 cut(s)	60, 285
Bst1107I	GTATAC	2 cut(s)	60, 285
Bst2UI	CCWGG	1 cut(s)	495
Bst6I	CTCTTC	2 cut(s)	25, 444
BstBI	TTCGAA	2 cut(s)	181, 402
BstC8I	GCNNGC	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	111, 301
BstMAI	GTCTC	1 cut(s)	22
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	477
BstNI	CCWGG	1 cut(s)	495
BstSCI	CCNGG	3 cut(s)	208, 327, 493
BstSLI	GKGCMC	1 cut(s)	131
BstZ17I	GTATAC	2 cut(s)	60, 285
BstZI	CGGCCG	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	91, 95
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	111, 301
Cac8I	GCNNGC	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	193
CviQI	GTAC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	93
EagI	CGGCCG	1 cut(s)	93
Eam1104I	CTCTTC	2 cut(s)	25, 444
EarI	CTCTTC	2 cut(s)	25, 444
EclXI	CGGCCG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	210
Eco52I	CGGCCG	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	468
EcoRII	CCWGG	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	1 cut(s)	196
FaiI	YATR	6 cut(s)	60, 194, 222, 285, 377, 474
FatI	CATG	1 cut(s)	192
FblI	GTMKAC	2 cut(s)	59, 284
FokI	GGATG	2 cut(s)	118, 308
FriOI	GRGCYC	1 cut(s)	210
FseI	GGCCGGCC	1 cut(s)	95
FspBI	CTAG	3 cut(s)	117, 290, 482
GsaI	CCCAGC	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	91, 95
HapII	CCGG	4 cut(s)	73, 92, 210, 329
Hin1II	CATG	1 cut(s)	196
HinfI	GANTC	4 cut(s)	183, 324, 334, 353
HpaII	CCGG	4 cut(s)	73, 92, 210, 329
Hpy166II	GTNNAC	3 cut(s)	31, 60, 285
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	3 cut(s)	31, 60, 285
HpyAV	CCTTC	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	3 cut(s)	154, 251, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	477
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	1 cut(s)	196
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	3 cut(s)	117, 290, 482
MaeII	ACGT	1 cut(s)	463
MboII	GAAGA	2 cut(s)	12, 461
MhlI	GDGCHC	2 cut(s)	131, 210
MluCI	AATT	2 cut(s)	312, 434
MnlI	CCTC	2 cut(s)	96, 445
MroNI	GCCGGC	1 cut(s)	91
MseI	TTAA	1 cut(s)	200
MspI	CCGG	4 cut(s)	73, 92, 210, 329
MspR9I	CCNGG	3 cut(s)	210, 329, 495
MvaI	CCWGG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	477
NaeI	GCCGGC	1 cut(s)	93
NciI	CCSGG	2 cut(s)	210, 329
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	2 cut(s)	130, 459
NspV	TTCGAA	2 cut(s)	181, 402
PdiI	GCCGGC	1 cut(s)	93
PfeI	GAWTC	4 cut(s)	183, 324, 334, 353
PfoI	TCCNGGA	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	493
PspFI	CCCAGC	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	2 cut(s)	130, 459
RigI	GGCCGGCC	1 cut(s)	95
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	210, 329, 495
SduI	GDGCHC	2 cut(s)	131, 210
SetI	ASST	8 cut(s)	122, 150, 162, 173, 361, 456, 466, 499
SfaNI	GCATC	1 cut(s)	96
SfuI	TTCGAA	2 cut(s)	181, 402
Sse9I	AATT	2 cut(s)	312, 434
SspMI	CTAG	3 cut(s)	117, 290, 482
StyD4I	CCNGG	3 cut(s)	208, 327, 493
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	6 cut(s)	78, 181, 186, 204, 351, 402
TasI	AATT	2 cut(s)	312, 434
TfiI	GAWTC	4 cut(s)	183, 324, 334, 353
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TspGWI	ACGGA	1 cut(s)	45
XmiI	GTMKAC	2 cut(s)	59, 284
XspI	CTAG	3 cut(s)	117, 290, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.