Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010604

Physical Location & Seq

Genomic Coordinates Forward (+)

1751035 .. 1756702

Gene Structure 5668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG028200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGATAGGCCAGCCAGTGAACTCTGGGATGATAAATCTGTCTCCTCCGTCTCTAAGCCAAAATGTCACAGTTTCAAAGGCCAATCTCGGCTTCCCAAATTCGCCGTGCCGAAACCCTACGACGTAAGGCTCAGACCCGACCTCGTCGCCTGCCAATTCGTCGGCTCCGTCGCCATCGACCTCGACATCGTCTCCGATACCCGCTTCATCGTCCTCAACGCCGCCGAGCTCTCCGTCAACCCCTCTGCCGATCGGGCTTCGTTGGTGGGAATGGAGGTGGTACAGTACGGCCTGGGTCGAAGGAGGATCCGAGCGGCGGAGAGGGTCGAAGTTGACCGGACGGGAATCAGAAGGTACTTCGACTTGGCAGCTATTCAAGCAAAAGGGAAACTTCAGCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

134

Amino Acids

14.89

Weight (kDa)

9.64

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1067100.v1.1 MD08G1067200.v1.1
prunus_persica	Prupe.1G457200_v2.0.a1 Prupe.1G457200_v2.0.a1
pyrus_communis	pycom08g05540 pycom08g05580 pycom15g05120
rosa_multiflora	Rmu_co7981604.1_g000001 Rmu_co8250275.1_g000001 Rmu_sc0032968.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072890
rosa_samantha	Rh5AG025300 Rh5AG025700 Rh5BG026800 Rh5CG028100 Rh5CG028200 Rh5CG028500 Rh5DG025400 Rh6DG505300 Rh6DG505400
rosa_wichuraiana	Rw5G002360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	314
AciI	CCGC	4 cut(s)	202, 222, 314, 317
AclWI	GGATC	2 cut(s)	301, 314
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	377
AfaI	GTAC	3 cut(s)	282, 287, 356
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	2 cut(s)	76, 377
AjnI	CCWGG	1 cut(s)	291
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	2 cut(s)	229, 371
AluI	AGCT	2 cut(s)	229, 371
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	3 cut(s)	46, 55, 196
AlwI	GGATC	2 cut(s)	301, 314
AoxI	GGCC	3 cut(s)	8, 79, 289
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	2 cut(s)	89, 304
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	3 cut(s)	46, 55, 196
BglI	GCCNNNNNGGC	1 cut(s)	254
BisI	GCNGC	3 cut(s)	222, 315, 369
BlsI	GCNGC	3 cut(s)	223, 316, 370
Bme1390I	CCNGG	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	166, 308
BmrFI	CCNGG	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	292
BsaWI	WCCGGW	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	380
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	3 cut(s)	10, 81, 291
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	3 cut(s)	46, 55, 196
BsmBI	CGTCTC	2 cut(s)	55, 196
BsnI	GGCC	3 cut(s)	10, 81, 291
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	250, 306
BspACI	CCGC	4 cut(s)	202, 222, 314, 317
BspANI	GGCC	3 cut(s)	10, 81, 291
BspCNI	CTCAG	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	166, 308
BspPI	GGATC	2 cut(s)	301, 314
BsrBI	CCGCTC	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	2 cut(s)	250, 306
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	71, 285
BstC8I	GCNNGC	2 cut(s)	12, 151
BstDEI	CTNAG	2 cut(s)	54, 131
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	2 cut(s)	253, 309
BstMAI	GTCTC	3 cut(s)	46, 55, 196
BstMBI	GATC	2 cut(s)	250, 306
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 377
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BsuRI	GGCC	3 cut(s)	10, 81, 291
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	12, 151
Csp6I	GTAC	3 cut(s)	281, 286, 355
CviQI	GTAC	3 cut(s)	281, 286, 355
DdeI	CTNAG	2 cut(s)	54, 131
DpnI	GATC	2 cut(s)	252, 308
DpnII	GATC	2 cut(s)	250, 306
EciI	GGCGGA	1 cut(s)	332
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	231
Esp3I	CGTCTC	2 cut(s)	55, 196
FalI	AAGNNNNNCTT	1 cut(s)	375
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	3 cut(s)	222, 315, 369
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	222, 315, 369
GluI	GCNGC	3 cut(s)	222, 315, 369
HaeIII	GGCC	3 cut(s)	10, 81, 291
HapII	CCGG	1 cut(s)	337
HincII	GTYRAC	2 cut(s)	238, 334
HindII	GTYRAC	2 cut(s)	238, 334
HinfI	GANTC	1 cut(s)	345
HpaII	CCGG	1 cut(s)	337
Hpy166II	GTNNAC	3 cut(s)	20, 238, 334
Hpy188I	TCNGA	4 cut(s)	134, 196, 311, 350
Hpy8I	GTNNAC	3 cut(s)	20, 238, 334
Hpy99I	CGWCG	4 cut(s)	125, 149, 164, 173
HpyAV	CCTTC	2 cut(s)	294, 345
HpyCH4III	ACNGT	2 cut(s)	71, 285
HpyCH4IV	ACGT	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 377
HpyF3I	CTNAG	2 cut(s)	54, 131
HpySE526I	ACGT	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	250, 306
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	7 cut(s)	10, 24, 28, 163, 278, 305, 350
Lsp1109I	GCAGC	1 cut(s)	380
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	2 cut(s)	252, 308
MbiI	CCGCTC	1 cut(s)	314
MboI	GATC	2 cut(s)	250, 306
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	98, 155
MnlI	CCTC	8 cut(s)	55, 152, 191, 224, 253, 268, 297, 315
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	254, 377
NdeII	GATC	2 cut(s)	250, 306
NlaIV	GGNNCC	2 cut(s)	166, 308
NmeAIII	GCCGAG	2 cut(s)	67, 250
NmuCI	GTSAC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	345
PflFI	GACNNNGTC	2 cut(s)	143, 188
PkrI	GCNGC	3 cut(s)	223, 316, 370
Ple19I	CGATCG	1 cut(s)	253
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	166, 308
PsuI	RGATCY	1 cut(s)	306
PsyI	GACNNNGTC	2 cut(s)	143, 188
PvuI	CGATCG	1 cut(s)	253
RsaI	GTAC	3 cut(s)	282, 287, 356
RsaNI	GTAC	3 cut(s)	281, 286, 355
SacI	GAGCTC	1 cut(s)	231
SatI	GCNGC	3 cut(s)	222, 315, 369
Sau3AI	GATC	2 cut(s)	250, 306
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	7 cut(s)	126, 144, 183, 231, 279, 356, 373
Sse9I	AATT	2 cut(s)	98, 155
SsiI	CCGC	4 cut(s)	202, 222, 314, 317
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	71, 285
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	5 cut(s)	177, 183, 298, 327, 360
TasI	AATT	2 cut(s)	98, 155
TauI	GCSGC	2 cut(s)	224, 317
TfiI	GAWTC	1 cut(s)	345
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	196
TspGWI	ACGGA	3 cut(s)	37, 157, 223
TspRI	CASTG	1 cut(s)	22
Tth111I	GACNNNGTC	2 cut(s)	143, 188
XapI	RAATTY	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.