Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010604

Physical Location & Seq

Genomic Coordinates Forward (+)

4236667 .. 4237680

Gene Structure 1014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAGCAGTTCAAAGGCCAGCCCCGGCTTCCGAAATTTGCCGTCCCGAAACGGTACGACGTAAGGCTGAAGCCGGACCTCGCCGCCTGCAAATTCGGCGGCTCCGTCGACATCGACCTGGATATCGTCGCCGATACCAAATTCGTCGTCCTCAACGCCGCCGAGCTCTTCGTCAATGCCGGCTCTGTCTCTTTCGCTCACAGAGGCTCGTCCAAGGTTTTCAAGCCTACGAAGGCCGAGACGTTCGAAGATGATGGAATTTTGGTTTTGGAGTTTGGAGAGACGCTTCTGATTGGGTCTGGAGTTTTGGCTATTGAGTTTGAAGGAATTTTGAATGACAAGATGAAGGGTTTCTACAAAAGTGTATATGAGCACAACGGTGAGAAGAAAAATATGGCAGTTACGCAGTTTGAACCCGTTGATGCCAGGCGGTGCTTTCCATGTTGGGATGAACCTGCTTGCAAGGTTATTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACAGAGTTGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 ko01100 ko04614 ko04640 map00480 map01100 map04614 map04640

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

177

Amino Acids

19.59

Weight (kDa)

6.16

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	15 - 169	3.2e-36	Peptidase M1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1067100.v1.1 MD08G1067200.v1.1
prunus_persica	Prupe.1G457200_v2.0.a1 Prupe.1G457200_v2.0.a1
pyrus_communis	pycom08g05540 pycom08g05580 pycom15g05120
rosa_multiflora	Rmu_co7981604.1_g000001 Rmu_co8250275.1_g000001 Rmu_sc0032968.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072890
rosa_samantha	Rh5AG025300 Rh5AG025700 Rh5BG026800 Rh5CG028100 Rh5CG028200 Rh5CG028500 Rh5DG025400 Rh6DG505300 Rh6DG505400
rosa_wichuraiana	Rw5G002360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	4 cut(s)	84, 99, 159, 430
AcsI	RAATTY	5 cut(s)	35, 92, 140, 258, 327
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	56
AgsI	TTSAA	5 cut(s)	13, 223, 323, 334, 413
AjnI	CCWGG	2 cut(s)	117, 425
AleI	CACNNNNGTG	1 cut(s)	378
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw21I	GWGCWC	2 cut(s)	168, 375
Alw26I	GTCTC	3 cut(s)	193, 233, 275
AoxI	GGCC	2 cut(s)	16, 234
ApoI	RAATTY	5 cut(s)	35, 92, 140, 258, 327
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
Asp700I	GAANNNNTTC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	392
AsuII	TTCGAA	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	168
BarI	GAAGNNNNNNTAC	2 cut(s)	338, 370
Bbv12I	GWGCWC	2 cut(s)	168, 375
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	2 cut(s)	119, 427
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	3 cut(s)	193, 233, 275
BfuAI	ACCTGC	1 cut(s)	463
BisI	GCNGC	3 cut(s)	84, 100, 159
BlsI	GCNGC	3 cut(s)	85, 101, 160
Bme1390I	CCNGG	3 cut(s)	25, 119, 427
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	3 cut(s)	25, 119, 427
BmsI	GCATC	1 cut(s)	412
BpmI	CTGGAG	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	23, 213
Bse118I	RCCGGY	1 cut(s)	179
BseBI	CCWGG	2 cut(s)	119, 427
BseDI	CCNNGG	2 cut(s)	23, 213
BseGI	GGATG	1 cut(s)	454
BshFI	GGCC	2 cut(s)	18, 236
BsiHKAI	GWGCWC	2 cut(s)	168, 375
BsiSI	CCGG	3 cut(s)	25, 74, 180
BslFI	GGGAC	1 cut(s)	29
BsmAI	GTCTC	3 cut(s)	193, 233, 275
BsmBI	CGTCTC	2 cut(s)	233, 275
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	18, 236
Bsp119I	TTCGAA	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	168, 375
BspACI	CCGC	4 cut(s)	84, 99, 159, 430
BspANI	GGCC	2 cut(s)	18, 236
BspLI	GGNNCC	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	463
BspQI	GCTCTTC	1 cut(s)	173
BspT104I	TTCGAA	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	23, 213
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	119, 427
Bst4CI	ACNGT	2 cut(s)	54, 380
Bst6I	CTCTTC	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	4 cut(s)	20, 88, 181, 460
BstF5I	GGATG	1 cut(s)	454
BstMAI	GTCTC	3 cut(s)	193, 233, 275
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	2 cut(s)	119, 427
BstSCI	CCNGG	3 cut(s)	23, 117, 425
BsuRI	GGCC	2 cut(s)	18, 236
BtsCI	GGATG	1 cut(s)	454
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	4 cut(s)	20, 88, 181, 460
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	1 cut(s)	441
CviQI	GTAC	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	117, 425
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	2 cut(s)	233, 275
FaeI	CATG	1 cut(s)	444
FaiI	YATR	4 cut(s)	367, 369, 395, 442
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	1 cut(s)	440
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	84, 100, 159
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	3 cut(s)	84, 100, 159
GluI	GCNGC	3 cut(s)	84, 100, 159
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	18, 236
HapII	CCGG	3 cut(s)	25, 74, 180
HgaI	GACGC	1 cut(s)	292
Hin1II	CATG	1 cut(s)	444
HincII	GTYRAC	2 cut(s)	109, 525
HindII	GTYRAC	2 cut(s)	109, 525
HpaII	CCGG	3 cut(s)	25, 74, 180
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	2 cut(s)	109, 525
Hpy188I	TCNGA	2 cut(s)	33, 291
Hpy188III	TCNNGA	2 cut(s)	46, 300
Hpy8I	GTNNAC	2 cut(s)	109, 525
Hpy99I	CGWCG	4 cut(s)	62, 110, 131, 149
HpyAV	CCTTC	3 cut(s)	226, 317, 340
HpyCH4III	ACNGT	2 cut(s)	54, 380
HpyCH4IV	ACGT	2 cut(s)	60, 242
HpyCH4V	TGCA	2 cut(s)	90, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpySE526I	ACGT	2 cut(s)	60, 242
Hsp92II	CATG	1 cut(s)	444
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	2 cut(s)	4, 107
LweI	GCATC	1 cut(s)	412
MaeII	ACGT	2 cut(s)	60, 242
MaeIII	GTNAC	1 cut(s)	400
MboII	GAAGA	3 cut(s)	160, 260, 397
MhlI	GDGCHC	2 cut(s)	168, 375
MluCI	AATT	5 cut(s)	35, 92, 140, 258, 327
MnlI	CCTC	3 cut(s)	89, 161, 197
MroNI	GCCGGC	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	1 cut(s)	529
MslI	CAYNNNNRTG	1 cut(s)	378
MspI	CCGG	3 cut(s)	25, 74, 180
MspR9I	CCNGG	3 cut(s)	25, 119, 427
MvaI	CCWGG	2 cut(s)	119, 427
MwoI	GCNNNNNNNGC	1 cut(s)	96
NaeI	GCCGGC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	25
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	1 cut(s)	444
NlaIV	GGNNCC	1 cut(s)	103
NmeAIII	GCCGAG	2 cut(s)	187, 262
NspV	TTCGAA	1 cut(s)	246
OliI	CACNNNNGTG	1 cut(s)	378
PciSI	GCTCTTC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdiI	GCCGGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	85, 101, 160
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	117, 425
PspGI	CCWGG	2 cut(s)	117, 425
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	378
SacI	GAGCTC	1 cut(s)	168
SalI	GTCGAC	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	529
SatI	GCNGC	3 cut(s)	84, 100, 159
Sau96I	GGNCC	1 cut(s)	76
ScrFI	CCNGG	3 cut(s)	25, 119, 427
SduI	GDGCHC	2 cut(s)	168, 375
SetI	ASST	8 cut(s)	63, 81, 120, 168, 219, 245, 457, 468
SfaNI	GCATC	1 cut(s)	412
SfuI	TTCGAA	1 cut(s)	246
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	378
Sse9I	AATT	5 cut(s)	35, 92, 140, 258, 327
SsiI	CCGC	4 cut(s)	84, 99, 159, 430
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	3 cut(s)	23, 117, 425
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	54, 380
TaiI	ACGT	2 cut(s)	63, 245
TaqI	TCGA	3 cut(s)	108, 114, 246
TasI	AATT	5 cut(s)	35, 92, 140, 258, 327
TauI	GCSGC	3 cut(s)	86, 102, 161
Tru1I	TTAA	1 cut(s)	529
Tru9I	TTAA	1 cut(s)	529
TspDTI	ATGAA	2 cut(s)	359, 465
TspGWI	ACGGA	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	5 cut(s)	35, 92, 140, 258, 327
XmiI	GTMKAC	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.