Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010604

Physical Location & Seq

Genomic Coordinates Forward (+)

1749753 .. 1756703

Gene Structure 6951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG025300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTGCCCGCTCACAGTCACTCTACTGCTCAGGCGGAGGAGACCCACTGTCGAGTGCATGGTCACAGCACGGTGGATGTACGACCAACACATCACTAAGGAAATTTTGAGAGACTATTTTGACAGGTCGGGCTTTAACTTGCAAGAGGTGGAGATCCGAGAGCCTGGGCTTGGATATATGTTATTCGAGAAGTATTATGTGGGTGACTCAAATGGCACTATTCTGTTGGCCAAGCCCGAAAATCTGTACCTAACATTTGATTCAGCCAACGAGTATCTGGTGGCGGTTGATGACCTGCAAAAGTACTTTCACAGTTTCAAAGGCCAATCTCGGCTTCCCAAATTCGCCGTGCCGAAACCCTACGACGTAAGGCTCAGACCCGACCTCGTCGCCTGCCAATTCGTCGGCTCCGTCGCCATCGACCTCGACATCGTCTCCGATACCCGCTTCATCGTCCTCAACGCCGCCGAGCTCTCCGTCAACCCCTCTGCCGATCGGGCTTCGTTGGTGGGAATGGAGGTGGTACAGTACGGCCTGGGTCGAAGGAGGATCCGAGCGGCGGAGAGGGTCGAAGTTGACCGGACGGGAATCAGAAGGTACTTCGACTTGGCAGCTATTCAAGCAAAAGGGAAACTTCAGCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

215

Amino Acids

24.63

Weight (kDa)

8.72

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1067100.v1.1 MD08G1067200.v1.1
prunus_persica	Prupe.1G457200_v2.0.a1 Prupe.1G457200_v2.0.a1
pyrus_communis	pycom08g05540 pycom08g05580 pycom15g05120
rosa_multiflora	Rmu_co7981604.1_g000001 Rmu_co8250275.1_g000001 Rmu_sc0032968.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072890
rosa_samantha	Rh5AG025300 Rh5AG025700 Rh5BG026800 Rh5CG028100 Rh5CG028200 Rh5CG028500 Rh5DG025400 Rh6DG505300 Rh6DG505400
rosa_wichuraiana	Rw5G002360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	303
AccBSI	CCGCTC	2 cut(s)	10, 557
AciI	CCGC	7 cut(s)	8, 34, 284, 445, 465, 557, 560
AclWI	GGATC	3 cut(s)	148, 544, 557
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	2 cut(s)	102, 341
AcuI	CTGAAG	1 cut(s)	620
AfaI	GTAC	6 cut(s)	80, 248, 305, 525, 530, 599
AfiI	CCNNNNNNNGG	2 cut(s)	170, 559
AgsI	TTSAA	2 cut(s)	319, 620
AhdI	GACNNNNNGTC	1 cut(s)	47
AjnI	CCWGG	2 cut(s)	163, 534
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	2 cut(s)	472, 614
AluI	AGCT	2 cut(s)	472, 614
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	3 cut(s)	34, 105, 439
AlwI	GGATC	3 cut(s)	148, 544, 557
AoxI	GGCC	3 cut(s)	228, 322, 532
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	2 cut(s)	102, 341
AsuHPI	GGTGA	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	549
BanII	GRGCYC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	623
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	2 cut(s)	332, 547
BciT130I	CCWGG	2 cut(s)	165, 536
BcoDI	GTCTC	3 cut(s)	34, 105, 439
BfuAI	ACCTGC	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	497
BisI	GCNGC	3 cut(s)	465, 558, 612
BlsI	GCNGC	3 cut(s)	466, 559, 613
BmcAI	AGTACT	1 cut(s)	305
Bme1390I	CCNGG	2 cut(s)	165, 536
BmeRI	GACNNNNNGTC	1 cut(s)	47
BmiI	GGNNCC	2 cut(s)	409, 551
BmrFI	CCNGG	2 cut(s)	165, 536
Bpu10I	CCTNAGC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	164, 535
BsaWI	WCCGGW	1 cut(s)	579
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 559
BseBI	CCWGG	2 cut(s)	165, 536
BseDI	CCNNGG	2 cut(s)	164, 535
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	170, 559
BseMII	CTCAG	2 cut(s)	43, 388
BseRI	GAGGAG	1 cut(s)	52
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	623
Bsh1285I	CGRYCG	1 cut(s)	496
BshFI	GGCC	3 cut(s)	230, 324, 534
BsiEI	CGRYCG	1 cut(s)	496
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	580
BslI	CCNNNNNNNGG	2 cut(s)	170, 559
BsmAI	GTCTC	3 cut(s)	34, 105, 439
BsmBI	CGTCTC	1 cut(s)	439
BsnI	GGCC	3 cut(s)	230, 324, 534
Bso31I	GGTCTC	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	8, 474
Bsp143I	GATC	3 cut(s)	153, 493, 549
BspACI	CCGC	7 cut(s)	8, 34, 284, 445, 465, 557, 560
BspANI	GGCC	3 cut(s)	230, 324, 534
BspCNI	CTCAG	2 cut(s)	42, 387
BspLI	GGNNCC	2 cut(s)	409, 551
BspMI	ACCTGC	1 cut(s)	303
BspPI	GGATC	3 cut(s)	148, 544, 557
BspTNI	GGTCTC	1 cut(s)	34
BsrBI	CCGCTC	2 cut(s)	10, 557
BssECI	CCNNGG	2 cut(s)	164, 535
BssMI	GATC	3 cut(s)	153, 493, 549
Bst2UI	CCWGG	2 cut(s)	165, 536
Bst4CI	ACNGT	5 cut(s)	16, 49, 72, 314, 528
BstC8I	GCNNGC	2 cut(s)	8, 394
BstDEI	CTNAG	3 cut(s)	29, 96, 374
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	3 cut(s)	156, 496, 552
BstMAI	GTCTC	3 cut(s)	34, 105, 439
BstMBI	GATC	3 cut(s)	153, 493, 549
BstMCI	CGRYCG	1 cut(s)	496
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 620
BstNI	CCWGG	2 cut(s)	165, 536
BstSCI	CCNGG	2 cut(s)	163, 534
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	623
BstX2I	RGATCY	2 cut(s)	153, 549
BstYI	RGATCY	2 cut(s)	153, 549
BsuRI	GGCC	3 cut(s)	230, 324, 534
BtsCI	GGATG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	45
BveI	ACCTGC	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	8, 394
Csp6I	GTAC	6 cut(s)	79, 247, 304, 524, 529, 598
CviAII	CATG	1 cut(s)	58
CviQI	GTAC	6 cut(s)	79, 247, 304, 524, 529, 598
DdeI	CTNAG	3 cut(s)	29, 96, 374
DpnI	GATC	3 cut(s)	155, 495, 551
DpnII	GATC	3 cut(s)	153, 493, 549
DriI	GACNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	228
Eam1105I	GACNNNNNGTC	1 cut(s)	47
EciI	GGCGGA	2 cut(s)	49, 575
Ecl136II	GAGCTC	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	474
Eco31I	GGTCTC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	620
EcoICRI	GAGCTC	1 cut(s)	472
EcoRII	CCWGG	2 cut(s)	163, 534
EcoT38I	GRGCYC	1 cut(s)	474
Esp3I	CGTCTC	1 cut(s)	439
FaeI	CATG	1 cut(s)	61
FaiI	YATR	4 cut(s)	59, 177, 179, 198
FalI	AAGNNNNNCTT	1 cut(s)	618
FatI	CATG	1 cut(s)	57
FauI	CCCGC	2 cut(s)	15, 452
Fnu4HI	GCNGC	3 cut(s)	465, 558, 612
FokI	GGATG	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	3 cut(s)	465, 558, 612
GluI	GCNGC	3 cut(s)	465, 558, 612
HaeIII	GGCC	3 cut(s)	230, 324, 534
HapII	CCGG	1 cut(s)	580
Hin1II	CATG	1 cut(s)	61
HincII	GTYRAC	2 cut(s)	481, 577
HindII	GTYRAC	2 cut(s)	481, 577
HinfI	GANTC	3 cut(s)	206, 260, 588
HpaII	CCGG	1 cut(s)	580
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	481, 577
Hpy188I	TCNGA	5 cut(s)	158, 377, 439, 554, 593
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	2 cut(s)	481, 577
Hpy99I	CGWCG	4 cut(s)	368, 392, 407, 416
HpyAV	CCTTC	2 cut(s)	537, 588
HpyCH4III	ACNGT	5 cut(s)	16, 49, 72, 314, 528
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	57, 142, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 620
HpyF3I	CTNAG	3 cut(s)	29, 96, 374
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	153, 493, 549
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	1 cut(s)	623
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	3 cut(s)	16, 61, 203
MalI	GATC	3 cut(s)	155, 495, 551
MbiI	CCGCTC	2 cut(s)	10, 557
MboI	GATC	3 cut(s)	153, 493, 549
MflI	RGATCY	2 cut(s)	153, 549
MhlI	GDGCHC	2 cut(s)	8, 474
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	3 cut(s)	102, 341, 398
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	9 cut(s)	30, 139, 395, 434, 467, 496, 511, 540, 558
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	1 cut(s)	580
MspR9I	CCNGG	2 cut(s)	165, 536
MvaI	CCWGG	2 cut(s)	165, 536
MwoI	GCNNNNNNNGC	2 cut(s)	497, 620
NdeII	GATC	3 cut(s)	153, 493, 549
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	409, 551
NmeAIII	GCCGAG	2 cut(s)	310, 493
NmuCI	GTSAC	3 cut(s)	16, 61, 203
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	260, 588
PflFI	GACNNNGTC	2 cut(s)	386, 431
PkrI	GCNGC	3 cut(s)	466, 559, 613
Ple19I	CGATCG	1 cut(s)	496
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	2 cut(s)	163, 534
PspGI	CCWGG	2 cut(s)	163, 534
PspN4I	GGNNCC	2 cut(s)	409, 551
PsuI	RGATCY	2 cut(s)	153, 549
PsyI	GACNNNGTC	2 cut(s)	386, 431
PvuI	CGATCG	1 cut(s)	496
RsaI	GTAC	6 cut(s)	80, 248, 305, 525, 530, 599
RsaNI	GTAC	6 cut(s)	79, 247, 304, 524, 529, 598
SacI	GAGCTC	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	3 cut(s)	465, 558, 612
Sau3AI	GATC	3 cut(s)	153, 493, 549
ScaI	AGTACT	1 cut(s)	305
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	165, 536
SduI	GDGCHC	2 cut(s)	8, 474
Sse9I	AATT	3 cut(s)	102, 341, 398
SsiI	CCGC	7 cut(s)	8, 34, 284, 445, 465, 557, 560
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	2 cut(s)	163, 534
TaaI	ACNGT	5 cut(s)	16, 49, 72, 314, 528
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	7 cut(s)	51, 186, 420, 426, 541, 570, 603
TasI	AATT	3 cut(s)	102, 341, 398
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	2 cut(s)	467, 560
TfiI	GAWTC	2 cut(s)	260, 588
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	3 cut(s)	16, 61, 203
TseI	GCWGC	1 cut(s)	611
Tsp45I	GTSAC	3 cut(s)	16, 61, 203
TspDTI	ATGAA	1 cut(s)	439
TspGWI	ACGGA	2 cut(s)	400, 466
TspRI	CASTG	1 cut(s)	52
Tth111I	GACNNNGTC	2 cut(s)	386, 431
XapI	RAATTY	2 cut(s)	102, 341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
ZrmI	AGTACT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.