Rh5CG028100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010604
Physical Location & Seq
Forward (+)
1749752 .. 1750430
679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG028100.1

Sequence Viewer

Length: 342 bp
ATGTGCCCGCTCACAGTCACTCTACTGCTCAGGCGGAGGAGACCCACTGTCGAGTGCATGGTCACAGCACGGTGGATGTACGACCAACACATCACTAAGGAAATTTTGAGAGACTATTTTGACAGGTCGGGCTTTAACTTGCAAGAGGTGGAGATCCGAGAGCCTGGGCTTGGATATATGTTATTCGAGAAGTATTATGTGGGTGACTCAAATGGCACTATTCTGTTGGCCAAGCCCGAAAATCTGTACCTAACATTTGATTCAGCCAACGAGTATCTGGTGGCGGTTGATGACCTGCAAAAGTACTTTCACAGGATCTTAGATCAATTTACACAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.45

Weight (kDa)

5.32

Isoelectric Point (pI)

79.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 303
AccBSI CCGCTC 1 cut(s) 10
AciI CCGC 3 cut(s) 8, 34, 284
AclWI GGATC 2 cut(s) 148, 323
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 1 cut(s) 102
AfaI GTAC 3 cut(s) 80, 248, 305
AfiI CCNNNNNNNGG 1 cut(s) 170
AhdI GACNNNNNGTC 1 cut(s) 47
AjnI CCWGG 1 cut(s) 163
Alw26I GTCTC 2 cut(s) 34, 105
AlwI GGATC 2 cut(s) 148, 323
AoxI GGCC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 215
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 2 cut(s) 34, 105
BfuAI ACCTGC 1 cut(s) 303
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 1 cut(s) 165
BmeRI GACNNNNNGTC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 52
BseSI GKGCMC 1 cut(s) 8
BshFI GGCC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 34, 105
BsnI GGCC 1 cut(s) 230
Bso31I GGTCTC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 153, 315, 322
BspACI CCGC 3 cut(s) 8, 34, 284
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 303
BspPI GGATC 2 cut(s) 148, 323
BspTNI GGTCTC 1 cut(s) 34
BsrBI CCGCTC 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 3 cut(s) 153, 315, 322
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 3 cut(s) 16, 49, 72
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 3 cut(s) 29, 96, 319
BstF5I GGATG 1 cut(s) 81
BstKTI GATC 3 cut(s) 156, 318, 325
BstMAI GTCTC 2 cut(s) 34, 105
BstMBI GATC 3 cut(s) 153, 315, 322
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 163
BstSLI GKGCMC 1 cut(s) 8
BstX2I RGATCY 2 cut(s) 153, 315
BstYI RGATCY 2 cut(s) 153, 315
BsuRI GGCC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 45
BveI ACCTGC 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 8
Csp6I GTAC 3 cut(s) 79, 247, 304
CviAII CATG 1 cut(s) 58
CviJI RGCY 6 cut(s) 132, 163, 169, 230, 235, 266
CviKI_1 RGCY 6 cut(s) 132, 163, 169, 230, 235, 266
CviQI GTAC 3 cut(s) 79, 247, 304
DdeI CTNAG 3 cut(s) 29, 96, 319
DpnI GATC 3 cut(s) 155, 317, 324
DpnII GATC 3 cut(s) 153, 315, 322
DriI GACNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 228
Eam1105I GACNNNNNGTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 163
FaeI CATG 1 cut(s) 61
FaiI YATR 5 cut(s) 59, 177, 179, 198, 340
FatI CATG 1 cut(s) 57
FauI CCCGC 1 cut(s) 15
FokI GGATG 1 cut(s) 88
HaeIII GGCC 1 cut(s) 230
Hin1II CATG 1 cut(s) 61
HinfI GANTC 2 cut(s) 206, 260
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 1 cut(s) 187
HpyCH4III ACNGT 3 cut(s) 16, 49, 72
HpyCH4V TGCA 3 cut(s) 57, 142, 298
HpyF3I CTNAG 3 cut(s) 29, 96, 319
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 3 cut(s) 153, 315, 322
LpnPI CCDG 7 cut(s) 16, 109, 150, 177, 263, 298, 308
MaeIII GTNAC 3 cut(s) 16, 61, 203
MalI GATC 3 cut(s) 155, 317, 324
MbiI CCGCTC 1 cut(s) 10
MboI GATC 3 cut(s) 153, 315, 322
MflI RGATCY 2 cut(s) 153, 315
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 2 cut(s) 102, 326
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 2 cut(s) 30, 139
Mox20I TGGCCA 1 cut(s) 230
MscI TGGCCA 1 cut(s) 230
MseI TTAA 1 cut(s) 135
Msp20I TGGCCA 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
NdeII GATC 3 cut(s) 153, 315, 322
NlaIII CATG 1 cut(s) 61
NmuCI GTSAC 3 cut(s) 16, 61, 203
PfeI GAWTC 1 cut(s) 260
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PsuI RGATCY 2 cut(s) 153, 315
RsaI GTAC 3 cut(s) 80, 248, 305
RsaNI GTAC 3 cut(s) 79, 247, 304
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 3 cut(s) 153, 315, 322
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 8
SetI ASST 4 cut(s) 128, 150, 252, 297
Sse9I AATT 2 cut(s) 102, 326
SsiI CCGC 3 cut(s) 8, 34, 284
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 3 cut(s) 16, 49, 72
TaqI TCGA 2 cut(s) 51, 186
TasI AATT 2 cut(s) 102, 326
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 3 cut(s) 16, 61, 203
Tsp45I GTSAC 3 cut(s) 16, 61, 203
TspRI CASTG 1 cut(s) 52
XapI RAATTY 1 cut(s) 102
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.