Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010604

Physical Location & Seq

Genomic Coordinates Reverse (-)

93869481 .. 93874973

Gene Structure 5493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCTTGGGATATCTCCTCACTTGTTTGTATCTCCGGCTCCCCCCACAAGCTTACAATGAACAAGGGCAAGTATTACACCCCATGGTCTTGCCTTGTTTGGGTGAGAGAGGGGATTATGTGCCCGCTCACGGTCACTCTCTTGCTCGGGCGGAGGAGACCCGCCGTCGAGTGCATGGTCACAACACGGTGGATGTACGACCAACACATCACCGAGGAAATTTTGAGAGACTATTTTGACGGGTCGGGCTTTAACTTGCAAGAGGTGAAGATCCTAGAGCCTAGCTCGGGATATACGTTATTCGAGAGTAATTATGCAGTCCATAATCTAATGTATGGACAGAAGGAAGCAGAGTATTATGTGGGTGACTCAAATGGCACTATTCTCGTTGGCCAAGCCCGAAAATCGTACACGACATTTAATTCGGCTAACGAGTATCCGGTGATCGTTGATGACCCGCAAAAGGATTTTTGCAGGTATGGCTTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.73

Weight (kDa)

5.59

Isoelectric Point (pI)

62.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1067100.v1.1 MD08G1067200.v1.1
prunus_persica	Prupe.1G457200_v2.0.a1 Prupe.1G457200_v2.0.a1
pyrus_communis	pycom08g05540 pycom08g05580 pycom15g05120
rosa_multiflora	Rmu_co7981604.1_g000001 Rmu_co8250275.1_g000001 Rmu_sc0032968.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072890
rosa_samantha	Rh5AG025300 Rh5AG025700 Rh5BG026800 Rh5CG028100 Rh5CG028200 Rh5CG028500 Rh5DG025400 Rh6DG505300 Rh6DG505400
rosa_wichuraiana	Rw5G002360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	465
AccBSI	CCGCTC	1 cut(s)	127
AciI	CCGC	4 cut(s)	125, 151, 162, 458
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	219
AfaI	GTAC	2 cut(s)	197, 410
AfiI	CCNNNNNNNGG	4 cut(s)	100, 130, 287, 463
AhdI	GACNNNNNGTC	1 cut(s)	164
AluBI	AGCT	2 cut(s)	52, 285
AluI	AGCT	2 cut(s)	52, 285
Alw26I	GTCTC	2 cut(s)	151, 222
AlwI	GGATC	1 cut(s)	265
Ama87I	CYCGRG	2 cut(s)	146, 286
AoxI	GGCC	1 cut(s)	391
ApoI	RAATTY	1 cut(s)	219
ArsI	GACNNNNNNTTYG	2 cut(s)	406, 438
AsuHPI	GGTGA	5 cut(s)	115, 202, 277, 377, 454
AvaI	CYCGRG	2 cut(s)	146, 286
BaeGI	GKGCMC	1 cut(s)	125
BalI	TGGCCA	1 cut(s)	393
BceAI	ACGGC	1 cut(s)	149
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BciVI	GTATCC	1 cut(s)	447
BcoDI	GTCTC	2 cut(s)	151, 222
BfaI	CTAG	2 cut(s)	275, 282
BfuAI	ACCTGC	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	447
BmeRI	GACNNNNNGTC	1 cut(s)	164
BmeT110I	CYCGRG	2 cut(s)	146, 286
BmiI	GGNNCC	1 cut(s)	40
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	83, 213
BsaWI	WCCGGW	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 130, 287, 463
BseDI	CCNNGG	2 cut(s)	83, 213
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	4 cut(s)	100, 130, 287, 463
BseRI	GAGGAG	2 cut(s)	7, 169
BseSI	GKGCMC	1 cut(s)	125
BshFI	GGCC	1 cut(s)	393
BsiHKCI	CYCGRG	2 cut(s)	146, 286
BsiSI	CCGG	2 cut(s)	36, 440
BslI	CCNNNNNNNGG	4 cut(s)	100, 130, 287, 463
BsmAI	GTCTC	2 cut(s)	151, 222
BsnI	GGCC	1 cut(s)	393
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	2 cut(s)	146, 286
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	270, 444
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	4 cut(s)	125, 151, 162, 458
BspANI	GGCC	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	465
BspPI	GGATC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	83, 213
BssMI	GATC	2 cut(s)	270, 444
BssT1I	CCWWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	133, 189
BstC8I	GCNNGC	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	198
BstKTI	GATC	2 cut(s)	273, 447
BstMAI	GTCTC	2 cut(s)	151, 222
BstMBI	GATC	2 cut(s)	270, 444
BstMWI	GCNNNNNNNGC	1 cut(s)	480
BstSLI	GKGCMC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	393
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	465
Cac8I	GCNNGC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	196, 409
CviAII	CATG	2 cut(s)	84, 175
CviQI	GTAC	2 cut(s)	196, 409
DpnI	GATC	2 cut(s)	272, 446
DpnII	GATC	2 cut(s)	270, 444
DriI	GACNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	391
Eam1105I	GACNNNNNGTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	13
Eco88I	CYCGRG	2 cut(s)	146, 286
EcoRV	GATATC	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	2 cut(s)	87, 178
FaiI	YATR	9 cut(s)	85, 119, 176, 294, 315, 324, 336, 360, 480
FatI	CATG	2 cut(s)	83, 174
FauI	CCCGC	3 cut(s)	132, 169, 465
FokI	GGATG	1 cut(s)	205
FspBI	CTAG	2 cut(s)	275, 282
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	2 cut(s)	36, 440
Hin1II	CATG	2 cut(s)	87, 178
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	1 cut(s)	368
HpaII	CCGG	2 cut(s)	36, 440
HphI	GGTGA	5 cut(s)	115, 202, 277, 377, 454
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188III	TCNNGA	2 cut(s)	288, 304
Hpy8I	GTNNAC	1 cut(s)	411
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	2 cut(s)	133, 189
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	4 cut(s)	174, 259, 317, 474
HpyF10VI	GCNNNNNNNGC	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	87, 178
Kzo9I	GATC	2 cut(s)	270, 444
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	3 cut(s)	49, 453, 460
MaeI	CTAG	2 cut(s)	275, 282
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	3 cut(s)	133, 178, 365
MalI	GATC	2 cut(s)	272, 446
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	2 cut(s)	270, 444
MboII	GAAGA	1 cut(s)	280
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	3 cut(s)	219, 310, 421
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	5 cut(s)	28, 103, 147, 208, 256
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	2 cut(s)	252, 420
Msp20I	TGGCCA	1 cut(s)	393
MspI	CCGG	2 cut(s)	36, 440
MwoI	GCNNNNNNNGC	1 cut(s)	480
NcoI	CCATGG	1 cut(s)	83
NdeII	GATC	2 cut(s)	270, 444
NlaIII	CATG	2 cut(s)	87, 178
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	3 cut(s)	133, 178, 365
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	2 cut(s)	197, 410
RsaNI	GTAC	2 cut(s)	196, 409
SaqAI	TTAA	2 cut(s)	252, 420
Sau3AI	GATC	2 cut(s)	270, 444
SchI	GAGTC	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	5 cut(s)	54, 267, 287, 299, 479
Sse9I	AATT	3 cut(s)	219, 310, 421
SsiI	CCGC	4 cut(s)	125, 151, 162, 458
SspMI	CTAG	2 cut(s)	275, 282
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	2 cut(s)	133, 189
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	2 cut(s)	168, 303
TasI	AATT	3 cut(s)	219, 310, 421
Tru1I	TTAA	2 cut(s)	252, 420
Tru9I	TTAA	2 cut(s)	252, 420
TseFI	GTSAC	3 cut(s)	133, 178, 365
Tsp45I	GTSAC	3 cut(s)	133, 178, 365
TspDTI	ATGAA	1 cut(s)	74
XapI	RAATTY	1 cut(s)	219
XspI	CTAG	2 cut(s)	275, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.