Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010600

Physical Location & Seq

Genomic Coordinates Reverse (-)

19405032 .. 19405457

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1165300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGATGAGCTCTTTAAGGACGAAGCATTTACCCACAGGATGGCTCACGATTCGATCGTACTTGCAGTATTTAGGATCGTTTATGCGATTCATTTCTTCAGGCCGCTTGCATTCGGGTAGCTCAATTACCTTCTTTTCTAGCAAGTCGTCTAACATTGCATCCATGTCTGAGTCAGGAAAAGGGTATACCTTCTGCTCCAATTCCCTCAAGGTGCTTTTGTACCTTTCTTGGGTGCGAGGAGGCTCACTTTTCTTTATCTCATTTGCTTTGGTTTTAGAGGAGATCTTGATAGGCGCGGATGCGGTCTTGACGGGCGCAGTGCTGACGGTGAACGCTTCCTTGGGGGGTTTCTTCCCAGTCTTGTCTACATTTGGGGAGAACACCTTATCCTTCTTGAAGTCGGTGATCGGCTATTTCTTCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

142

Amino Acids

15.37

Weight (kDa)

9.66

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010600)

Species	Orthologous Gene IDs
malus_domestica	MD03G1176200.v1.1 MD08G1165300.v1.1 MD11G1237700.v1.1
pyrus_communis	pycom01g02890 pycom01g02900 pycom02g19360 pycom04g06970 pycom04g07250 pycom04g10800 pycom05g07890 pycom09g14920 pycom11g04170 pycom12g09620 pycom13g19210 pycom13g24020 pycom13g25040 pycom13g26440 pycom13g27810 pycom15g37580 pycom420g00120 pycom520g00130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	39
AccI	GTMKAC	2 cut(s)	185, 365
AccII	CGCG	1 cut(s)	296
AciI	CCGC	3 cut(s)	103, 296, 302
AclWI	GGATC	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	2 cut(s)	59, 221
AfiI	CCNNNNNNNGG	2 cut(s)	39, 229
AgsI	TTSAA	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AloI	GAACNNNNNNTCC	2 cut(s)	371, 403
AluBI	AGCT	2 cut(s)	9, 120
AluI	AGCT	2 cut(s)	9, 120
Alw21I	GWGCWC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	100
AspLEI	GCGC	2 cut(s)	296, 317
AsuHPI	GGTGA	2 cut(s)	340, 415
BanII	GRGCYC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	11
BccI	CCATC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	138
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	167, 289
BmuI	ACTGGG	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 229
Bse1I	ACTGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	3 cut(s)	44, 158, 304
BseLI	CCNNNNNNNGG	2 cut(s)	39, 229
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	2 cut(s)	252, 293
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	11
BslI	CCNNNNNNNGG	2 cut(s)	39, 229
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	53, 74, 282, 405
BspACI	CCGC	3 cut(s)	103, 296, 302
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	296
BspPI	GGATC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	4 cut(s)	53, 74, 282, 405
BssNAI	GTATAC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	339
Bst1107I	GTATAC	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	3 cut(s)	44, 158, 304
BstFNI	CGCG	1 cut(s)	296
BstHHI	GCGC	2 cut(s)	296, 317
BstKTI	GATC	4 cut(s)	56, 77, 285, 408
BstMBI	GATC	4 cut(s)	53, 74, 282, 405
BstMCI	CGRYCG	1 cut(s)	56
BstUI	CGCG	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BstZ17I	GTATAC	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	3 cut(s)	44, 158, 304
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	107
CfoI	GCGC	2 cut(s)	296, 317
Csp6I	GTAC	2 cut(s)	58, 220
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	6 cut(s)	9, 43, 102, 120, 243, 411
CviKI_1	RGCY	6 cut(s)	9, 43, 102, 120, 243, 411
CviQI	GTAC	2 cut(s)	58, 220
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	4 cut(s)	55, 76, 284, 407
DpnII	GATC	4 cut(s)	53, 74, 282, 405
Ecl136II	GAGCTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	1 cut(s)	166
FaiI	YATR	3 cut(s)	83, 164, 186
FatI	CATG	1 cut(s)	162
FblI	GTMKAC	2 cut(s)	185, 365
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	3 cut(s)	51, 145, 311
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	2 cut(s)	295, 316
GluI	GCNGC	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	102
HhaI	GCGC	2 cut(s)	296, 317
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	2 cut(s)	294, 315
HinP1I	GCGC	2 cut(s)	294, 315
HinfI	GANTC	3 cut(s)	49, 87, 170
HphI	GGTGA	2 cut(s)	340, 415
Hpy166II	GTNNAC	3 cut(s)	186, 331, 366
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	5 cut(s)	46, 174, 286, 307, 394
Hpy8I	GTNNAC	3 cut(s)	186, 331, 366
HpyAV	CCTTC	3 cut(s)	139, 199, 400
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	3 cut(s)	64, 109, 158
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	2 cut(s)	294, 315
Kzo9I	GATC	4 cut(s)	53, 74, 282, 405
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	4 cut(s)	21, 84, 159, 369
LweI	GCATC	2 cut(s)	167, 289
MaeI	CTAG	1 cut(s)	138
MalI	GATC	4 cut(s)	55, 76, 284, 407
MboI	GATC	4 cut(s)	53, 74, 282, 405
MboII	GAAGA	3 cut(s)	87, 343, 409
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	2 cut(s)	123, 199
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	4 cut(s)	215, 230, 233, 271
MseI	TTAA	1 cut(s)	14
Mva1269I	GAATGC	1 cut(s)	109
MvnI	CGCG	1 cut(s)	296
NdeII	GATC	4 cut(s)	53, 74, 282, 405
NlaIII	CATG	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	49, 87
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	104
Ple19I	CGATCG	1 cut(s)	56
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	282
PvuI	CGATCG	1 cut(s)	56
RsaI	GTAC	2 cut(s)	59, 221
RsaNI	GTAC	2 cut(s)	58, 220
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	4 cut(s)	53, 74, 282, 405
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	7 cut(s)	11, 122, 131, 191, 213, 225, 386
SfaNI	GCATC	2 cut(s)	167, 289
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	123, 199
SsiI	CCGC	3 cut(s)	103, 296, 302
SspMI	CTAG	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	52
TasI	AATT	2 cut(s)	123, 199
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	49, 87
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	1 cut(s)	324
TspDTI	ATGAA	1 cut(s)	79
TspRI	CASTG	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	39
XmiI	GTMKAC	2 cut(s)	185, 365
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.