Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010600

Physical Location & Seq

Genomic Coordinates Forward (+)

2352514 .. 2352983

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g02890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGACTCATGATATAATGGTATTTACAGTACCTAATATCGTTAACGCGACCCATTTCTTCAGGGCGCTTGCATCATTGCAGCCACGTGAAAGTCAGGAAAAGGGTACGTCTTCTACTCCAGTTCCCTCAAGGTGTTTTTGTACCTATCTTGGGTACGAGAAGGCTTGCCTCTCTTTATCTCCTTCGTTTTTTTCTTGGAGGAGGTCAGCGACAGGTGCGGCGGAGGTCTTGATAGGGGTAGTATGGACGGTAAAAGCTTCCTTGGTGGGCTTTTTCCCAGTCTTGTCTACCTTTAAGGCAAACACCTTATCCTTCTTGAAGTCGGTGATGGGCTCCTTCTTCCCATTATTGGCGATACTCAACTCCATGTCGTGGGATCAAGTTGCCAACTCCTCAAATGTTCTCTGTTTTATGCCTTTGAGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

143

Amino Acids

15.69

Weight (kDa)

9.34

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010600)

Species	Orthologous Gene IDs
malus_domestica	MD03G1176200.v1.1 MD08G1165300.v1.1 MD11G1237700.v1.1
pyrus_communis	pycom01g02890 pycom01g02900 pycom02g19360 pycom04g06970 pycom04g07250 pycom04g10800 pycom05g07890 pycom09g14920 pycom11g04170 pycom12g09620 pycom13g19210 pycom13g24020 pycom13g25040 pycom13g26440 pycom13g27810 pycom15g37580 pycom420g00120 pycom520g00130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	287
AccII	CGCG	1 cut(s)	47
AciI	CCGC	2 cut(s)	218, 221
AclWI	GGATC	1 cut(s)	384
AcuI	CTGAAG	1 cut(s)	43
AcvI	CACGTG	1 cut(s)	86
AfaI	GTAC	4 cut(s)	30, 106, 142, 155
AfiI	CCNNNNNNNGG	3 cut(s)	150, 349, 372
AgsI	TTSAA	1 cut(s)	319
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
AlwI	GGATC	1 cut(s)	384
ApeKI	GCWGC	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	335
BbrPI	CACGTG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	322
BfoI	RGCGCY	1 cut(s)	68
BisI	GCNGC	2 cut(s)	80, 219
BlsI	GCNGC	2 cut(s)	81, 220
BmiI	GGNNCC	1 cut(s)	334
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	112
BsaAI	YACGTR	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 349, 372
Bse1I	ACTGG	2 cut(s)	119, 278
Bse3DI	GCAATG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	3 cut(s)	150, 349, 372
BseMI	GCAATG	1 cut(s)	74
BseNI	ACTGG	2 cut(s)	119, 278
BseRI	GAGGAG	2 cut(s)	214, 382
BseXI	GCAGC	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	150, 349, 372
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	2 cut(s)	218, 221
BspFNI	CGCG	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	119, 278
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	376
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	28, 250
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	69, 166
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	429
Cac8I	GCNNGC	2 cut(s)	69, 166
CciI	TCATGA	1 cut(s)	7
CfoI	GCGC	1 cut(s)	67
Csp6I	GTAC	4 cut(s)	29, 105, 141, 154
CviAII	CATG	2 cut(s)	8, 367
CviJI	RGCY	5 cut(s)	82, 164, 257, 270, 333
CviKI_1	RGCY	5 cut(s)	82, 164, 257, 270, 333
CviQI	GTAC	4 cut(s)	29, 105, 141, 154
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	43
Eco72I	CACGTG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	2 cut(s)	11, 370
FaiI	YATR	5 cut(s)	9, 14, 244, 368, 413
FatI	CATG	2 cut(s)	7, 366
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	2 cut(s)	80, 219
FriOI	GRGCYC	1 cut(s)	335
Fsp4HI	GCNGC	2 cut(s)	80, 219
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	2 cut(s)	80, 219
GsuI	CTGGAG	1 cut(s)	102
HaeII	RGCGCY	1 cut(s)	68
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	11, 370
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	1 cut(s)	4
HpaI	GTTAAC	1 cut(s)	43
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	43, 288
Hpy188III	TCNNGA	4 cut(s)	8, 95, 229, 316
Hpy8I	GTNNAC	2 cut(s)	43, 288
HpyAV	CCTTC	4 cut(s)	154, 192, 322, 346
HpyCH4III	ACNGT	2 cut(s)	28, 250
HpyCH4IV	ACGT	2 cut(s)	85, 107
HpyCH4V	TGCA	2 cut(s)	71, 79
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpySE526I	ACGT	2 cut(s)	85, 107
Hsp92II	CATG	2 cut(s)	11, 370
HspAI	GCGC	1 cut(s)	65
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	5 cut(s)	46, 80, 132, 198, 291
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	80
MaeII	ACGT	2 cut(s)	85, 107
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	3 cut(s)	49, 102, 331
MhlI	GDGCHC	1 cut(s)	335
MnlI	CCTC	7 cut(s)	136, 179, 192, 195, 217, 403, 414
MseI	TTAA	2 cut(s)	42, 294
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	2 cut(s)	11, 370
NlaIV	GGNNCC	1 cut(s)	334
PagI	TCATGA	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	372
PkrI	GCNGC	2 cut(s)	81, 220
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	86
PspCI	CACGTG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	334
RsaI	GTAC	4 cut(s)	30, 106, 142, 155
RsaNI	GTAC	4 cut(s)	29, 105, 141, 154
SaqAI	TTAA	2 cut(s)	42, 294
SatI	GCNGC	2 cut(s)	80, 219
Sau3AI	GATC	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	335
SfaNI	GCATC	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SsiI	CCGC	2 cut(s)	218, 221
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	28, 250
TaiI	ACGT	2 cut(s)	88, 110
TauI	GCSGC	1 cut(s)	221
Tru1I	TTAA	2 cut(s)	42, 294
Tru9I	TTAA	2 cut(s)	42, 294
TseI	GCWGC	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.