pycom15g37580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010600
Physical Location & Seq
Forward (+)
37515849 .. 37516579
731 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g37580.2

Sequence Viewer

Length: 477 bp
ATGATGAGTTCTTTAAGAACGAAGCACTTGCCAACAGGATGGCTCACAATACGATGGTACTTGCAGTACCTAGGATCGTTTGTGCGATTCATTTCTTCAGGACGCTTGCATTCGGGTAGCTCAATCACCTTTTTTTCCAGCAAGTCATCTAACATGGCAGCCATGTCAGAGTCAGGAAAAGGGTACGTTTTCTGTTCCAACTCTCTCAAGGTGCTCTTGTATCTGTCTTGGGTGCAAGAAGGCTCACTTGTCTTTATCTCTTTCGCTTTCTTCTTGGAGGAGATCTTGATGGGCGCTGAGGAGGTCTTGATGGGTGCTGAGGAGGCCTTGATGGGGGTAGTGTTGACGGTGAAAGCTTCCTTAGCGGGCTTCTTCCTGATCTTGTCTACATTTGCGGCGAATACTTTATCCTTATTGAAGTTAGTAATCGGCTCATTTTTCCCTGCTGTAGAAACGGTTGAGGAATTCCTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.46

Weight (kDa)

6.1

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 386
AciI CCGC 2 cut(s) 365, 395
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 464
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 3 cut(s) 59, 68, 185
AfiI CCNNNNNNNGG 1 cut(s) 333
AgsI TTSAA 1 cut(s) 418
AluBI AGCT 2 cut(s) 120, 356
AluI AGCT 2 cut(s) 120, 356
Alw21I GWGCWC 1 cut(s) 216
AlwI GGATC 1 cut(s) 82
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 464
AspA2I CCTAGG 1 cut(s) 70
AspLEI GCGC 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 118, 361
AvrII CCTAGG 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 216
BbvCI CCTCAGC 2 cut(s) 297, 318
BbvI GCAGC 1 cut(s) 170
BccI CCATC 5 cut(s) 33, 48, 283, 304, 325
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BfaI CTAG 2 cut(s) 71, 475
BfmI CTRYAG 1 cut(s) 447
BfoI RGCGCY 1 cut(s) 297
BglII AGATCT 1 cut(s) 282
BisI GCNGC 2 cut(s) 159, 396
BlnI CCTAGG 1 cut(s) 70
BlsI GCNGC 2 cut(s) 160, 397
Bpu10I CCTNAGC 3 cut(s) 297, 318, 361
BpuEI CTTGAG 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMII CTCAG 2 cut(s) 288, 309
BseRI GAGGAG 3 cut(s) 293, 314, 335
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 333
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 3 cut(s) 74, 282, 378
BspACI CCGC 2 cut(s) 365, 395
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 2 cut(s) 289, 310
BspPI GGATC 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 3 cut(s) 74, 282, 378
BssT1I CCWWGG 1 cut(s) 70
Bst4CI ACNGT 2 cut(s) 349, 457
BstC8I GCNNGC 2 cut(s) 107, 367
BstDEI CTNAG 3 cut(s) 297, 318, 361
BstF5I GGATG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 3 cut(s) 77, 285, 381
BstMBI GATC 3 cut(s) 74, 282, 378
BstMWI GCNNNNNNNGC 2 cut(s) 323, 362
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 282
BstXI CCANNNNNNTGG 1 cut(s) 39
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 1 cut(s) 326
BtsCI GGATG 1 cut(s) 44
Cac8I GCNNGC 2 cut(s) 107, 367
CfoI GCGC 1 cut(s) 296
CseI GACGC 1 cut(s) 111
Csp6I GTAC 3 cut(s) 58, 67, 184
CviAII CATG 2 cut(s) 154, 163
CviJI RGCY 8 cut(s) 43, 120, 161, 243, 326, 356, 369, 432
CviKI_1 RGCY 8 cut(s) 43, 120, 161, 243, 326, 356, 369, 432
CviQI GTAC 3 cut(s) 58, 67, 184
DdeI CTNAG 3 cut(s) 297, 318, 361
DpnI GATC 3 cut(s) 76, 284, 380
DpnII GATC 3 cut(s) 74, 282, 378
Eco130I CCWWGG 1 cut(s) 70
Eco147I AGGCCT 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 2 cut(s) 157, 166
FaiI YATR 2 cut(s) 155, 164
FalI AAGNNNNNCTT 4 cut(s) 200, 232, 231, 263
FatI CATG 2 cut(s) 153, 162
FauI CCCGC 1 cut(s) 358
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 2 cut(s) 159, 396
FokI GGATG 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 159, 396
FspBI CTAG 2 cut(s) 71, 475
GlaI GCGC 1 cut(s) 295
GluI GCNGC 2 cut(s) 159, 396
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 1 cut(s) 326
HgaI GACGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 296
Hin1II CATG 2 cut(s) 157, 166
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 2 cut(s) 87, 170
HphI GGTGA 2 cut(s) 118, 361
Hpy166II GTNNAC 2 cut(s) 345, 387
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 5 cut(s) 99, 174, 286, 307, 376
Hpy8I GTNNAC 2 cut(s) 345, 387
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 2 cut(s) 349, 457
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 64, 109, 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 362
HpyF3I CTNAG 3 cut(s) 297, 318, 361
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 2 cut(s) 157, 166
HspAI GCGC 1 cut(s) 294
Kzo9I GATC 3 cut(s) 74, 282, 378
LpnPI CCDG 6 cut(s) 21, 84, 151, 159, 389, 456
Lsp1109I GCAGC 1 cut(s) 170
MaeI CTAG 2 cut(s) 71, 475
MaeII ACGT 1 cut(s) 186
MalI GATC 3 cut(s) 76, 284, 380
MboI GATC 3 cut(s) 74, 282, 378
MboII GAAGA 3 cut(s) 87, 262, 364
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 464
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 6 cut(s) 271, 292, 295, 313, 316, 454
MseI TTAA 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 109
MwoI GCNNNNNNNGC 2 cut(s) 323, 362
NdeII GATC 3 cut(s) 74, 282, 378
NlaIII CATG 2 cut(s) 157, 166
PceI AGGCCT 1 cut(s) 326
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 87
PkrI GCNGC 2 cut(s) 160, 397
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 3 cut(s) 59, 68, 185
RsaNI GTAC 3 cut(s) 58, 67, 184
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 2 cut(s) 159, 396
Sau3AI GATC 3 cut(s) 74, 282, 378
SchI GAGTC 1 cut(s) 179
SduI GDGCHC 1 cut(s) 216
SetI ASST 7 cut(s) 72, 122, 131, 189, 213, 306, 358
SfcI CTRYAG 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 1 cut(s) 464
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 2 cut(s) 365, 395
SspMI CTAG 2 cut(s) 71, 475
StuI AGGCCT 1 cut(s) 326
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 2 cut(s) 349, 457
TaiI ACGT 1 cut(s) 189
TasI AATT 1 cut(s) 464
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 79
XapI RAATTY 1 cut(s) 464
XmaJI CCTAGG 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 386
XspI CTAG 2 cut(s) 71, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.