pycom13g24020

Choline monooxygenase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
21309292 .. 21311841
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g24020.7

Sequence Viewer

Length: 1863 bp
ATGAAATTCACAATTAAATCATTAATTGAAATCATTTACATAAGTAGGGCATGCAGGGGATATCACCTGCAAATAATCTACGCTCATAGCTACATTAATGATATCAACATATCATTAAGTAAACACGAAAATTCTATAACTAATGAAACGAGAACAAGTGTACAAAGTAGATTTGTATTGATGAATTTGTATGGTTACAATCTCTGTTTACAATTTTCCTCTGATTCAATCTTCAAATTTGATCTTGGACGAATGATTGAACGATTGCTTCAGGTTTTCAGCTTGAAACAATGCGCGGATAGTCTTCACCTCAAAGTTGGTCTTGGTGACTTGATCTTGAATCGAATGTTGTTACAAGTTTTAAGCTTGCAACAAAGTCTTGAAGGAATTGGCACAAGTGAAAGCTTCGGCTTTGGTTGTGCATTCTTCGAAGAGAGCTTTGGTAGCGTATTATACCTAGGATCGTTAATGCGATTCATCTCTTCGAGGCACTTGCATTCAGGTAACTCAATCACCTTCTTTTCCAGTAAGTCATCTAGCATTGTAGCCACGTTAGAGTCAGGAAAAGGATATGTCTTCTGCTCTAGTTCCCTCAAGGTGTTTTTGTACCTATCTTGGGTGCGAGAAGGCTCACCTCTCTTCATCTCCTTCGTTTTGTTTTTGGAGGAGATCTTGATAGGTGAAGAGGAGGTCTTGATGGAGGTAGTATTGACGGCAAAAGCTTCCTTGGCGGGCTTCTTCCCATCCTTGTCTACCTTTGGAGCAAACACCTCATCCCTCTTGAAGTCAGGGACTGAGTTTTCAATTCCTCAAACGTTCTCGGCTTTGTGCCTTGGAGGATGTAATGTAACCCCTAGTGCATGCCTTGAATGCACATCTCAATGGCGGAGGTTTGAGAAAGTTGATATTTGTAATCCAGACTTAATGAACTACTATATACTCGTTATTGAGGGATTCCTTTACAAGCTGATCCCAGCTGCTGATAGACTCAAGCTCAAGGTTTTTAACAAGGTAATCTTCTTCCATCCTAGCATTGTTGCAAGTTTCGATGAAATAGGCAATATAATTTTTGGGATTGCCCTTTCCAATCGAATTGCATTAATCTTCTTGGAGTATGGTTTTGAGTACAGCACAGAGTCCTGTGAGCTTTCTTCGTACTGCACCTTGATCGTGTTTGTGATCATCTCTTGCAATTGTTGGAAAGAGAGAGATCCTATAAGCATCGTAACTCGGTCCATCTCTAGCTTCTCCTCATCTTTGTCCATCAAAGGCTCCTCATTTTCATTAGTTTCCTCCTTTGGTGGATCAACCTTCAATTCAGCTTTCTCGTCGTGCTGCTCTTTCAGACAGTTGAAGAGTGTAGCAATCTACAAGTCATTTTCCTCCACGGTCCTTGTCAGCCTTGCGATTACTTCGATCATTGATGCCAACTGCTCTTCGACGGAAGTCACACCAGTAGTCATAACTTGCATGGCTACGGGATACGAGCTGCTACTTGAGTTAGCATCTGAAGTCAAGGACTCAGAGTACCTCATTGGCCTTTCTTCCCTTGGTGCCTTTAGCGAAGCCAAGGTGATCACGGGCTCGTGCCTCAGGTGCTCTTGCTCATTCGGCAAGTTTGGTGTAAAGGTGGAAGGCACGGCAGAGAGAGCTCTTGCCTTGCTTCAGGATGTAACGCCCAAAATGCCACCACTTGCAGCAAGGATGTTCTTGTTCTTTACGTTGGTTGCAGGAACGGTAGAGATGTCTCACCGGGCGTGCCAAATTTGTAAACACGAAAATTCTGTAACGAATGAAATGAGAACACATCTCTGTTTACAATTTTCCTCTAATTCAGTCTTCAAATTTGATGTAGATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

621

Amino Acids

68.52

Weight (kDa)

6.39

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 75
Acc36I ACCTGC 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 1553
AccI GTMKAC 1 cut(s) 752
AccII CGCG 1 cut(s) 296
AciI CCGC 3 cut(s) 296, 731, 886
AclI AACGTT 1 cut(s) 815
AclWI GGATC 4 cut(s) 469, 964, 1205, 1312
AcsI RAATTY 7 cut(s) 5, 130, 184, 236, 1764, 1780, 1844
AcuI CTGAAG 3 cut(s) 254, 1530, 1649
AfaI GTAC 5 cut(s) 162, 608, 1127, 1157, 1529
AfiI CCNNNNNNNGG 1 cut(s) 616
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
Alw21I GWGCWC 2 cut(s) 1601, 1654
Alw26I GTCTC 1 cut(s) 1752
AlwI GGATC 4 cut(s) 469, 964, 1205, 1312
AlwNI CAGNNNCTG 2 cut(s) 794, 980
AoxI GGCC 1 cut(s) 1537
ApeKI GCWGC 4 cut(s) 977, 1335, 1489, 1697
ApoI RAATTY 7 cut(s) 5, 130, 184, 236, 1764, 1780, 1844
AseI ATTAAT 3 cut(s) 23, 96, 1100
AspA2I CCTAGG 1 cut(s) 457
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 1233, 1390
AsuC2I CCSGG 1 cut(s) 1754
AsuHPI GGTGA 8 cut(s) 56, 299, 338, 505, 624, 692, 1585, 1742
AsuII TTCGAA 1 cut(s) 429
AvaII GGWCC 2 cut(s) 1233, 1390
AvrII CCTAGG 1 cut(s) 457
AxyI CCTNAGG 1 cut(s) 1592
BanI GGYRCC 1 cut(s) 1553
BanII GRGCYC 2 cut(s) 1586, 1654
BauI CACGAG 1 cut(s) 1585
BbsI GAAGAC 3 cut(s) 296, 568, 1831
Bbv12I GWGCWC 2 cut(s) 1601, 1654
BbvI GCAGC 4 cut(s) 964, 1322, 1476, 1709
BccI CCATC 5 cut(s) 691, 751, 1032, 1244, 1271
BceAI ACGGC 2 cut(s) 729, 1656
BcgI CGANNNNNNTGC 4 cut(s) 475, 509, 1150, 1184
BciVI GTATCC 1 cut(s) 1475
BclI TGATCA 2 cut(s) 1179, 1575
BcnI CCSGG 1 cut(s) 1754
BcoDI GTCTC 1 cut(s) 1752
BfaI CTAG 6 cut(s) 458, 537, 585, 855, 1029, 1242
BfuAI ACCTGC 1 cut(s) 75
BfuI GTATCC 1 cut(s) 1475
BglII AGATCT 1 cut(s) 669
BisI GCNGC 4 cut(s) 978, 1336, 1490, 1698
BlnI CCTAGG 1 cut(s) 457
BlsI GCNGC 4 cut(s) 979, 1337, 1491, 1699
Bme1390I CCNGG 1 cut(s) 1754
Bme18I GGWCC 2 cut(s) 1233, 1390
BmgT120I GGNCC 2 cut(s) 1233, 1390
BmiI GGNNCC 2 cut(s) 1273, 1555
BmrFI CCNGG 1 cut(s) 1754
BmsI GCATC 3 cut(s) 1230, 1414, 1514
BoxI GACNNNNGTC 1 cut(s) 1445
BpiI GAAGAC 3 cut(s) 296, 568, 1831
Bpu14I TTCGAA 1 cut(s) 429
BpuEI CTTGAG 4 cut(s) 578, 974, 980, 1517
BpuMI CCSGG 1 cut(s) 1754
BsaJI CCNNGG 6 cut(s) 457, 726, 832, 1386, 1549, 1569
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse1I ACTGG 2 cut(s) 525, 1454
Bse21I CCTNAGG 1 cut(s) 1592
BseDI CCNNGG 6 cut(s) 457, 726, 832, 1386, 1549, 1569
BseGI GGATG 6 cut(s) 743, 773, 845, 1024, 1675, 1710
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMII CTCAG 3 cut(s) 786, 1536, 1606
BseNI ACTGG 2 cut(s) 525, 1454
BseRI GAGGAG 4 cut(s) 680, 701, 1240, 1264
BseXI GCAGC 4 cut(s) 964, 1322, 1476, 1709
BseYI CCCAGC 1 cut(s) 973
BsgI GTGCAG 1 cut(s) 1144
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 1 cut(s) 1539
BshNI GGYRCC 1 cut(s) 1553
BsiHKAI GWGCWC 2 cut(s) 1601, 1654
BsiSI CCGG 1 cut(s) 1753
BslFI GGGAC 1 cut(s) 805
BslI CCNNNNNNNGG 1 cut(s) 616
BsmAI GTCTC 1 cut(s) 1752
BsmFI GGGAC 1 cut(s) 805
BsmI GAATGC 3 cut(s) 422, 496, 875
BsnI GGCC 1 cut(s) 1539
Bsp119I TTCGAA 1 cut(s) 429
Bsp1286I GDGCHC 3 cut(s) 1586, 1601, 1654
Bsp1407I TGTACA 1 cut(s) 160
BspACI CCGC 3 cut(s) 296, 731, 886
BspANI GGCC 1 cut(s) 1539
BspCNI CTCAG 3 cut(s) 787, 1535, 1605
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 2 cut(s) 1273, 1555
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 4 cut(s) 469, 964, 1205, 1312
BspQI GCTCTTC 1 cut(s) 1441
BspT104I TTCGAA 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 1553
BsrGI TGTACA 1 cut(s) 160
BsrI ACTGG 2 cut(s) 525, 1454
BssECI CCNNGG 6 cut(s) 457, 726, 832, 1386, 1549, 1569
BssSI CACGAG 1 cut(s) 1585
BssT1I CCWWGG 5 cut(s) 457, 726, 832, 1549, 1569
Bst2BI CACGAG 1 cut(s) 1585
Bst4CI ACNGT 3 cut(s) 1350, 1390, 1738
Bst6I CTCTTC 6 cut(s) 426, 487, 644, 678, 1349, 1441
BstAUI TGTACA 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 429
BstC8I GCNNGC 5 cut(s) 52, 368, 733, 862, 1759
BstDEI CTNAG 3 cut(s) 795, 1522, 1592
BstDSI CCRYGG 1 cut(s) 1386
BstF5I GGATG 6 cut(s) 743, 773, 845, 1024, 1675, 1710
BstFNI CGCG 1 cut(s) 296
BstHHI GCGC 1 cut(s) 296
BstMAI GTCTC 1 cut(s) 1752
BstMWI GCNNNNNNNGC 7 cut(s) 444, 728, 870, 1596, 1611, 1649, 1684
BstNSI RCATGY 2 cut(s) 54, 864
BstPAI GACNNNNGTC 1 cut(s) 1445
BstSCI CCNGG 1 cut(s) 1752
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 4 cut(s) 964, 1322, 1476, 1709
BstV2I GAAGAC 3 cut(s) 296, 568, 1831
BstX2I RGATCY 2 cut(s) 669, 1210
BstYI RGATCY 2 cut(s) 669, 1210
Bsu36I CCTNAGG 1 cut(s) 1592
BsuI GTATCC 1 cut(s) 1475
BsuRI GGCC 1 cut(s) 1539
BtgI CCRYGG 1 cut(s) 1386
BtsCI GGATG 6 cut(s) 743, 773, 845, 1024, 1675, 1710
BveI ACCTGC 1 cut(s) 75
Cac8I GCNNGC 5 cut(s) 52, 368, 733, 862, 1759
CaiI CAGNNNCTG 2 cut(s) 794, 980
CfoI GCGC 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 1233, 1390
Csp6I GTAC 5 cut(s) 161, 607, 1126, 1156, 1528
CspCI CAANNNNNGTGG 2 cut(s) 1375, 1410
CviAII CATG 3 cut(s) 51, 861, 1471
CviQI GTAC 5 cut(s) 161, 607, 1126, 1156, 1528
DdeI CTNAG 3 cut(s) 795, 1522, 1592
Eam1104I CTCTTC 6 cut(s) 426, 487, 644, 678, 1349, 1441
EarI CTCTTC 6 cut(s) 426, 487, 644, 678, 1349, 1441
EciI GGCGGA 1 cut(s) 901
Ecl136II GAGCTC 1 cut(s) 1652
Eco130I CCWWGG 5 cut(s) 457, 726, 832, 1549, 1569
Eco24I GRGCYC 2 cut(s) 1586, 1654
Eco32I GATATC 2 cut(s) 62, 103
Eco47I GGWCC 2 cut(s) 1233, 1390
Eco53kI GAGCTC 1 cut(s) 1652
Eco57I CTGAAG 3 cut(s) 254, 1530, 1649
Eco81I CCTNAGG 1 cut(s) 1592
EcoICRI GAGCTC 1 cut(s) 1652
EcoRV GATATC 2 cut(s) 62, 103
EcoT14I CCWWGG 5 cut(s) 457, 726, 832, 1549, 1569
EcoT38I GRGCYC 2 cut(s) 1586, 1654
ErhI CCWWGG 5 cut(s) 457, 726, 832, 1549, 1569
FaeI CATG 3 cut(s) 54, 864, 1474
FalI AAGNNNNNCTT 4 cut(s) 306, 338, 1001, 1033
FaqI GGGAC 1 cut(s) 805
FatI CATG 3 cut(s) 50, 860, 1470
FauI CCCGC 1 cut(s) 724
FbaI TGATCA 2 cut(s) 1179, 1575
FblI GTMKAC 1 cut(s) 752
Fnu4HI GCNGC 4 cut(s) 978, 1336, 1490, 1698
FokI GGATG 6 cut(s) 730, 760, 852, 1011, 1682, 1717
FriOI GRGCYC 2 cut(s) 1586, 1654
Fsp4HI GCNGC 4 cut(s) 978, 1336, 1490, 1698
FspBI CTAG 6 cut(s) 458, 537, 585, 855, 1029, 1242
GlaI GCGC 1 cut(s) 295
GluI GCNGC 4 cut(s) 978, 1336, 1490, 1698
GsaI CCCAGC 1 cut(s) 977
HaeIII GGCC 1 cut(s) 1539
HapII CCGG 1 cut(s) 1753
HhaI GCGC 1 cut(s) 296
Hin1II CATG 3 cut(s) 54, 864, 1474
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HindIII AAGCTT 3 cut(s) 364, 403, 720
HinfI GANTC 8 cut(s) 224, 340, 474, 557, 954, 987, 1136, 1520
HpaII CCGG 1 cut(s) 1753
HphI GGTGA 8 cut(s) 56, 299, 338, 505, 624, 692, 1585, 1742
Hpy166II GTNNAC 6 cut(s) 122, 161, 209, 753, 1772, 1817
Hpy188I TCNGA 4 cut(s) 223, 1346, 1510, 1525
Hpy188III TCNNGA 8 cut(s) 337, 380, 561, 673, 694, 781, 917, 1667
Hpy8I GTNNAC 6 cut(s) 122, 161, 209, 753, 1772, 1817
Hpy99I CGWCG 2 cut(s) 1333, 1444
HpyAV CCTTC 6 cut(s) 377, 526, 620, 658, 1321, 1628
HpyCH4III ACNGT 3 cut(s) 1350, 1390, 1738
HpyCH4IV ACGT 3 cut(s) 551, 815, 1721
HpyF10VI GCNNNNNNNGC 7 cut(s) 444, 728, 870, 1596, 1611, 1649, 1684
HpyF3I CTNAG 3 cut(s) 795, 1522, 1592
HpySE526I ACGT 3 cut(s) 551, 815, 1721
Hsp92II CATG 3 cut(s) 54, 864, 1474
HspAI GCGC 1 cut(s) 294
Ksp22I TGATCA 2 cut(s) 1179, 1575
LguI GCTCTTC 1 cut(s) 1441
LmnI GCTCC 2 cut(s) 761, 1277
Lsp1109I GCAGC 4 cut(s) 964, 1322, 1476, 1709
LweI GCATC 3 cut(s) 1230, 1414, 1514
MaeI CTAG 6 cut(s) 458, 537, 585, 855, 1029, 1242
MaeII ACGT 3 cut(s) 551, 815, 1721
MaeIII GTNAC 9 cut(s) 194, 326, 351, 503, 847, 1225, 1447, 1672, 1786
MfeI CAATTG 1 cut(s) 1192
MflI RGATCY 2 cut(s) 669, 1210
MhlI GDGCHC 3 cut(s) 1586, 1601, 1654
MlyI GAGTC 4 cut(s) 566, 981, 1145, 1514
MmeI TCCRAC 1 cut(s) 1178
MseI TTAA 9 cut(s) 15, 23, 96, 116, 362, 467, 923, 1005, 1100
MslI CAYNNNNRTG 1 cut(s) 880
MspA1I CMGCKG 1 cut(s) 977
MspI CCGG 1 cut(s) 1753
MspR9I CCNGG 1 cut(s) 1754
MunI CAATTG 1 cut(s) 1192
Mva1269I GAATGC 3 cut(s) 422, 496, 875
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 7 cut(s) 444, 728, 870, 1596, 1611, 1649, 1684
NciI CCSGG 1 cut(s) 1754
NlaIII CATG 3 cut(s) 54, 864, 1474
NlaIV GGNNCC 2 cut(s) 1273, 1555
NmeAIII GCCGAG 1 cut(s) 800
NmuCI GTSAC 2 cut(s) 326, 1447
NspI RCATGY 2 cut(s) 54, 864
NspV TTCGAA 1 cut(s) 429
PaeI GCATGC 2 cut(s) 54, 864
PaqCI CACCTGC 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 1441
PctI GAATGC 3 cut(s) 422, 496, 875
PfeI GAWTC 4 cut(s) 224, 340, 474, 954
PkrI GCNGC 4 cut(s) 979, 1337, 1491, 1699
PleI GAGTC 4 cut(s) 565, 981, 1144, 1514
PpsI GAGTC 4 cut(s) 565, 981, 1144, 1514
PshAI GACNNNNGTC 1 cut(s) 1445
PshBI ATTAAT 3 cut(s) 23, 96, 1100
Psp124BI GAGCTC 1 cut(s) 1654
Psp1406I AACGTT 1 cut(s) 815
PspFI CCCAGC 1 cut(s) 973
PspN4I GGNNCC 2 cut(s) 1273, 1555
PspPI GGNCC 2 cut(s) 1233, 1390
PstNI CAGNNNCTG 2 cut(s) 794, 980
PsuI RGATCY 2 cut(s) 669, 1210
PvuII CAGCTG 1 cut(s) 977
RsaI GTAC 5 cut(s) 162, 608, 1127, 1157, 1529
RsaNI GTAC 5 cut(s) 161, 607, 1126, 1156, 1528
RseI CAYNNNNRTG 1 cut(s) 880
SacI GAGCTC 1 cut(s) 1654
SapI GCTCTTC 1 cut(s) 1441
SaqAI TTAA 9 cut(s) 15, 23, 96, 116, 362, 467, 923, 1005, 1100
SatI GCNGC 4 cut(s) 978, 1336, 1490, 1698
Sau96I GGNCC 2 cut(s) 1233, 1390
SchI GAGTC 4 cut(s) 566, 981, 1145, 1514
ScrFI CCNGG 1 cut(s) 1754
SduI GDGCHC 3 cut(s) 1586, 1601, 1654
SfaNI GCATC 3 cut(s) 1230, 1414, 1514
SfuI TTCGAA 1 cut(s) 429
SinI GGWCC 2 cut(s) 1233, 1390
SmiMI CAYNNNNRTG 1 cut(s) 880
SmlI CTYRAG 4 cut(s) 593, 989, 995, 1496
SmoI CTYRAG 4 cut(s) 593, 989, 995, 1496
SphI GCATGC 2 cut(s) 54, 864
SsiI CCGC 3 cut(s) 296, 731, 886
SspMI CTAG 6 cut(s) 458, 537, 585, 855, 1029, 1242
SstI GAGCTC 1 cut(s) 1654
StyD4I CCNGG 1 cut(s) 1752
StyI CCWWGG 5 cut(s) 457, 726, 832, 1549, 1569
TaaI ACNGT 3 cut(s) 1350, 1390, 1738
TaiI ACGT 3 cut(s) 554, 818, 1724
TaqI TCGA 7 cut(s) 343, 429, 485, 1047, 1090, 1415, 1439
TaqII GACCGA 1 cut(s) 1221
TatI WGTACW 2 cut(s) 160, 1125
TfiI GAWTC 4 cut(s) 224, 340, 474, 954
Tru1I TTAA 9 cut(s) 15, 23, 96, 116, 362, 467, 923, 1005, 1100
Tru9I TTAA 9 cut(s) 15, 23, 96, 116, 362, 467, 923, 1005, 1100
TseFI GTSAC 2 cut(s) 326, 1447
TseI GCWGC 4 cut(s) 977, 1335, 1489, 1697
Tsp45I GTSAC 2 cut(s) 326, 1447
TspDTI ATGAA 9 cut(s) 17, 159, 197, 466, 631, 941, 1065, 1272, 1809
TspGWI ACGGA 1 cut(s) 1457
VpaK11BI GGWCC 2 cut(s) 1233, 1390
VspI ATTAAT 3 cut(s) 23, 96, 1100
XapI RAATTY 7 cut(s) 5, 130, 184, 236, 1764, 1780, 1844
XceI RCATGY 2 cut(s) 54, 864
XmaJI CCTAGG 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 752
XspI CTAG 6 cut(s) 458, 537, 585, 855, 1029, 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.