Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010600

Physical Location & Seq

Genomic Coordinates Forward (+)

11497324 .. 11497596

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g09620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGAAGCCATGTTAGAGTCAGGAAAAGGGTACGTTTTCTGTTCCAACTCTCTCAAGGTGCTATTGTATCTGTCTTGGGTGCGAGAAGGCTCACTTGTCTTTATCTCCTTCGCTTTCTTCTTGGAGGAGATCTTGATGGGTGCTGAGGAGGTCTTGATACGGGTAGTGTTGACGGTGAAAGCTTCCTTAGCGGGCTTTTTCCCGGTCTTGTCTACGTTTGGGGTGAATACTTTATCCTTCTTGAAGTTAGTAATCGGCTCATTTTTCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

91

Amino Acids

9.97

Weight (kDa)

5.23

Isoelectric Point (pI)

21.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010600)

Species	Orthologous Gene IDs
malus_domestica	MD03G1176200.v1.1 MD08G1165300.v1.1 MD11G1237700.v1.1
pyrus_communis	pycom01g02890 pycom01g02900 pycom02g19360 pycom04g06970 pycom04g07250 pycom04g10800 pycom05g07890 pycom09g14920 pycom11g04170 pycom12g09620 pycom13g19210 pycom13g24020 pycom13g25040 pycom13g26440 pycom13g27810 pycom15g37580 pycom420g00120 pycom520g00130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	212
AciI	CCGC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	244
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	187, 235
BbvCI	CCTCAGC	1 cut(s)	144
BccI	CCATC	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	203
BglII	AGATCT	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	203
Bpu10I	CCTNAGC	2 cut(s)	144, 187
BpuEI	CTTGAG	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	2 cut(s)	140, 161
BsiSI	CCGG	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	136
BssMI	GATC	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	2 cut(s)	144, 187
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	5 cut(s)	8, 90, 182, 195, 258
CviKI_1	RGCY	5 cut(s)	8, 90, 182, 195, 258
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	144, 187
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
FaeI	CATG	1 cut(s)	13
FaiI	YATR	1 cut(s)	11
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	1 cut(s)	9
FauI	CCCGC	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	212
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	1 cut(s)	13
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	2 cut(s)	187, 235
Hpy166II	GTNNAC	2 cut(s)	171, 213
Hpy188III	TCNNGA	4 cut(s)	21, 133, 154, 241
Hpy8I	GTNNAC	2 cut(s)	171, 213
HpyAV	CCTTC	3 cut(s)	80, 118, 247
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	33, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	2 cut(s)	144, 187
HpySE526I	ACGT	2 cut(s)	33, 215
Hsp92II	CATG	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	129
LpnPI	CCDG	2 cut(s)	6, 216
MaeII	ACGT	2 cut(s)	33, 215
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	1 cut(s)	109
MflI	RGATCY	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	3 cut(s)	118, 139, 142
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	188
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	1 cut(s)	13
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
Sau3AI	GATC	1 cut(s)	129
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	5 cut(s)	36, 60, 153, 184, 218
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SsiI	CCGC	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	2 cut(s)	36, 218
XmiI	GTMKAC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.