MD11G1237700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0010600
Physical Location & Seq
Reverse (-)
34554502 .. 34554927
426 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1237700.v1.1.491

Sequence Viewer

Length: 426 bp
ATGATGAGCTCTTTGAGGACGAAGCATTTACCTACAGGATGGCTCACGATTCGATGGTACTTGCAGTATTTAGGATCGTTTATGCGATTCATTTCTTCAGACCGCTTGCATTCGGGTAGCTCGATTACCTTCTTTTCTAGCAAGTCGTCTAACATTGCATCCATGTCTGAGTTAGGAAAAGGGTATACCTTCTGCTCCAATTCCCTCAAGGTGTTTTTGTACCTTTCTTGGGTGCGAGGAGGCTCACTTTTCTTTATCTCCTTTGCTTTGGTTTTGGAGGAGATCTTGATAGGCGCGGAGGCGGTCTTAACGGGCGCAGTGCTGACGGTGAACGCTTCCTTGGGGGGTTTATTCCCAGTCTTGTCTACATTTGGGGAGAACACCTTATCCTTCTTGAAGTCGGTGATCGGCTCTTTCTTCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.51

Weight (kDa)

9.52

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 185, 365
AccII CGCG 1 cut(s) 296
AciI CCGC 3 cut(s) 103, 296, 302
AclWI GGATC 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 2 cut(s) 59, 221
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 397
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AloI GAACNNNNNNTCC 2 cut(s) 371, 403
AluBI AGCT 2 cut(s) 9, 120
AluI AGCT 2 cut(s) 9, 120
Alw21I GWGCWC 1 cut(s) 11
AlwI GGATC 1 cut(s) 82
AspLEI GCGC 2 cut(s) 296, 317
AsuHPI GGTGA 2 cut(s) 340, 415
BanII GRGCYC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 11
BccI CCATC 2 cut(s) 33, 48
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 33
BglII AGATCT 1 cut(s) 282
BmrI ACTGGG 1 cut(s) 350
BmsI GCATC 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 339
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 2 cut(s) 44, 158
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 356
BseRI GAGGAG 2 cut(s) 252, 293
Bsh1236I CGCG 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 229
BsmI GAATGC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 3 cut(s) 74, 282, 405
BspACI CCGC 3 cut(s) 103, 296, 302
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 1 cut(s) 296
BspPI GGATC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 3 cut(s) 74, 282, 405
BssNAI GTATAC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 339
Bst1107I GTATAC 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 44, 158
BstFNI CGCG 1 cut(s) 296
BstHHI GCGC 2 cut(s) 296, 317
BstKTI GATC 3 cut(s) 77, 285, 408
BstMBI GATC 3 cut(s) 74, 282, 405
BstSFI CTRYAG 1 cut(s) 33
BstUI CGCG 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BstZ17I GTATAC 1 cut(s) 186
BtsCI GGATG 2 cut(s) 44, 158
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 2 cut(s) 296, 317
Csp6I GTAC 2 cut(s) 58, 220
CviAII CATG 1 cut(s) 163
CviJI RGCY 5 cut(s) 9, 43, 120, 243, 411
CviKI_1 RGCY 5 cut(s) 9, 43, 120, 243, 411
CviQI GTAC 2 cut(s) 58, 220
DdeI CTNAG 1 cut(s) 168
DpnI GATC 3 cut(s) 76, 284, 407
DpnII GATC 3 cut(s) 74, 282, 405
Ecl136II GAGCTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 1 cut(s) 166
FaiI YATR 3 cut(s) 83, 164, 186
FatI CATG 1 cut(s) 162
FblI GTMKAC 2 cut(s) 185, 365
FokI GGATG 2 cut(s) 51, 145
FriOI GRGCYC 1 cut(s) 11
FspBI CTAG 1 cut(s) 138
GlaI GCGC 2 cut(s) 295, 316
HhaI GCGC 2 cut(s) 296, 317
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 2 cut(s) 294, 315
HinP1I GCGC 2 cut(s) 294, 315
HinfI GANTC 2 cut(s) 49, 87
HphI GGTGA 2 cut(s) 340, 415
Hpy166II GTNNAC 3 cut(s) 186, 331, 366
Hpy188I TCNGA 2 cut(s) 100, 169
Hpy188III TCNNGA 3 cut(s) 46, 286, 394
Hpy8I GTNNAC 3 cut(s) 186, 331, 366
HpyAV CCTTC 3 cut(s) 139, 199, 400
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4V TGCA 3 cut(s) 64, 109, 158
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 2 cut(s) 294, 315
Kzo9I GATC 3 cut(s) 74, 282, 405
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 2 cut(s) 21, 369
LweI GCATC 1 cut(s) 167
MaeI CTAG 1 cut(s) 138
MalI GATC 3 cut(s) 76, 284, 407
MboI GATC 3 cut(s) 74, 282, 405
MboII GAAGA 2 cut(s) 87, 409
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 1 cut(s) 199
MnlI CCTC 6 cut(s) 9, 215, 230, 233, 271, 292
MseI TTAA 1 cut(s) 308
Mva1269I GAATGC 1 cut(s) 109
MvnI CGCG 1 cut(s) 296
NdeII GATC 3 cut(s) 74, 282, 405
NlaIII CATG 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 49, 87
Psp124BI GAGCTC 1 cut(s) 11
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 2 cut(s) 59, 221
RsaNI GTAC 2 cut(s) 58, 220
SacI GAGCTC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 308
Sau3AI GATC 3 cut(s) 74, 282, 405
SduI GDGCHC 1 cut(s) 11
SetI ASST 8 cut(s) 11, 34, 122, 131, 191, 213, 225, 386
SfaNI GCATC 1 cut(s) 167
SfcI CTRYAG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 1 cut(s) 199
SsiI CCGC 3 cut(s) 103, 296, 302
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 11
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 328
TaqI TCGA 2 cut(s) 52, 122
TasI AATT 1 cut(s) 199
TfiI GAWTC 2 cut(s) 49, 87
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 79
TspRI CASTG 1 cut(s) 324
XmiI GTMKAC 2 cut(s) 185, 365
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.