Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011604

Physical Location & Seq

Genomic Coordinates Forward (+)

29275544 .. 29276998

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1226200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAGGTGTTGGCATTGTCTTACTTTGGAAGTTATGGAATCTGGGTTAGTGAAAAATGTAGTAGATTTGAAGTGGGAGTTTGTCCGCAGGCGTTTATCACTCAGGCTTCTCACAGGATTAGGAACATGCTTGGAGAGTTGTAGTCAAGTACACGAGACACGTGAAATTATAGCAGACTGTATCAATCTTGGTCAGCCGAAACCCATTTTTTCCTATTACCTCAACTGTTCCATTGACTTCCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006508 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0007049 GO:0007059 GO:0007063 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010564 GO:0010638 GO:0015630 GO:0016043 GO:0016049 GO:0016192 GO:0016787 GO:0019538 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032940 GO:0032989 GO:0033043 GO:0033044 GO:0033045 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044238 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045132 GO:0045787 GO:0045876 GO:0046903 GO:0048285 GO:0048316 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051726 GO:0051983 GO:0051984 GO:0060560 GO:0061458 GO:0061640 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072686 GO:0090068 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:0140096 GO:1901564 GO:1902410 GO:1903046 GO:1903047 GO:2000114 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

Peptidase_C50

Protein Analysis

83

Amino Acids

9.51

Weight (kDa)

6.7

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1226200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113201
rosa_laevigata	RLG00000013598 RLG00000032863
rosa_roxburghii	Rroxscaffold_7G00200920
rosa_rugosa	Rorug01G0041600 Rorug01G0041700 Rorug01G0041800 Rorug01G0041900 Rorug03G0217700
rosa_samantha	Rh1BG050100 Rh2AG240400 Rh2CG244500 Rh2DG248400 Rh4AG281100 Rh4BG286600 Rh4BG286700 Rh4DG283700 Rh5DG504300
rosa_wichuraiana	Rw0G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	85
AcvI	CACGTG	1 cut(s)	161
AfaI	GTAC	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	149
BauI	CACGAG	1 cut(s)	152
BbrPI	CACGTG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	149
BspACI	CCGC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	114
BssSI	CACGAG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	179, 227
BstBAI	YACGTR	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	101
BstMAI	GTCTC	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	1 cut(s)	126
CviJI	RGCY	2 cut(s)	106, 196
CviKI_1	RGCY	2 cut(s)	106, 196
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	101
Eco72I	CACGTG	1 cut(s)	161
FaeI	CATG	1 cut(s)	129
FaiI	YATR	3 cut(s)	35, 127, 170
FatI	CATG	1 cut(s)	125
Hin1II	CATG	1 cut(s)	129
HinfI	GANTC	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	151
HpyCH4III	ACNGT	2 cut(s)	179, 227
HpyCH4IV	ACGT	1 cut(s)	160
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	129
LpnPI	CCDG	4 cut(s)	27, 73, 88, 99
MaeII	ACGT	1 cut(s)	160
MluCI	AATT	1 cut(s)	165
MnlI	CCTC	1 cut(s)	230
NlaIII	CATG	1 cut(s)	129
NspI	RCATGY	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	38
PmaCI	CACGTG	1 cut(s)	161
PmlI	CACGTG	1 cut(s)	161
Ppu21I	YACGTR	1 cut(s)	161
PspCI	CACGTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SetI	ASST	3 cut(s)	8, 163, 222
Sse9I	AATT	1 cut(s)	165
SsiI	CCGC	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	179, 227
TaiI	ACGT	1 cut(s)	163
TasI	AATT	1 cut(s)	165
TatI	WGTACW	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	38
XceI	RCATGY	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.