Rorug03G0217700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011604
Physical Location & Seq
Forward (+)
19833025 .. 19834233
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0217700.1

Sequence Viewer

Length: 999 bp
ATGGAAATGGAGAGCAACATAATCTTGAAGAACCAGAAGCTGGGTGCCTTTGATATTCTTAGAAAAGCTTTAGGTATCACTACCACAAACATCAACTTCTTTCTCTTCACTATTTTCGCTTCACTTCCTCTCTTCTGTTTCTTGGTTTATAATCAACCTTTTCTGCAAGAATTCCAGGATCAAGTATTAGAAATTCTAAAACATCCGGCCTTTGTTTATTATTTTGAGATGGACACGTTTAAGTGGTCATTACAATATGATGCGACCCCGGGATATGATGTAACCCCGGAATGGAACAAACGGTTCCCTGGTGAGTTGATTCAACAAGCTCTTCTCTATCTAGTGCCTCTCCATCTCCTAGAGCTCATCACTGCGCTTGCAATTGCTGTTTTGGCCTCGAAGATATATAAAGAAGAGAGACCAATGACTCTGAAGGAGATGGTAAATAATCAACCTTTCGACAAAATCACACTGAAAGCTTTTCTCATCACAGCTGTCTATGTTCTCGTCTTGTCGACCTGTAGTGATATACTCGGATCTGTATGGTCAGCTGCAAGCTACTCTTTTGTATTCAGGTATTTCAACCGTGAAATTTTCTTATCTTTATGGTGTTGTATAGCATCTCTAGCAATGCTCACGACGTATTTGGCATGGAACGTGATATGGAATATGAGTATCGTGATTTCATTATTGGAGGGGATACATGGAATCAAGGCATTCGGTCTTGTAACGTATCTAAGCACTGGCAACGGGTGGGGAGGGTTTCTTTTGATGTTCATTTTCTTTGCTTGGGAAGTAACTTTAAGGTTGCCATGTCTCTATTTTGGCTGCAAAGGAAGGGGGAGTGGAATGTTTGTTGCACAGAGTATCTTGTTGTGCTTCGGGAATGTGTTCGAGTTGGTCGTCTTTGTGATATATTTCCATGATTGCAAGAACCGGGTTTTAGAAAAGCTGTTGATGATCAAGGCTAACAAAGCTGGTGATCAGAGCTGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

38.04

Weight (kDa)

6.88

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 40
AccI GTMKAC 1 cut(s) 515
AclWI GGATC 2 cut(s) 186, 544
AcsI RAATTY 3 cut(s) 170, 192, 591
AcuI CTGAAG 1 cut(s) 452
AfiI CCNNNNNNNGG 2 cut(s) 40, 291
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 3 cut(s) 28, 323, 583
AjnI CCWGG 2 cut(s) 174, 307
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 2 cut(s) 412, 821
AlwI GGATC 2 cut(s) 186, 544
AlwNI CAGNNNCTG 1 cut(s) 40
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 2 cut(s) 207, 393
ApeKI GCWGC 2 cut(s) 551, 828
ApoI RAATTY 3 cut(s) 170, 192, 591
Asp700I GAANNNNTTC 1 cut(s) 890
AspLEI GCGC 1 cut(s) 376
AsuC2I CCSGG 4 cut(s) 269, 270, 287, 938
AsuHPI GGTGA 2 cut(s) 323, 992
AvaI CYCGRG 1 cut(s) 268
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 538, 815
BccI CCATC 3 cut(s) 223, 360, 433
BciT130I CCWGG 2 cut(s) 176, 309
BciVI GTATCC 1 cut(s) 693
BclI TGATCA 2 cut(s) 960, 982
BcnI CCSGG 4 cut(s) 269, 270, 287, 938
BcoDI GTCTC 2 cut(s) 412, 821
BfaI CTAG 3 cut(s) 341, 359, 626
BfmI CTRYAG 1 cut(s) 520
BfuI GTATCC 1 cut(s) 693
BisI GCNGC 2 cut(s) 552, 829
BlsI GCNGC 2 cut(s) 553, 830
Bme1390I CCNGG 6 cut(s) 176, 269, 270, 287, 309, 938
BmeT110I CYCGRG 1 cut(s) 268
BmiI GGNNCC 2 cut(s) 46, 305
BmrFI CCNGG 6 cut(s) 176, 269, 270, 287, 309, 938
BmsI GCATC 2 cut(s) 250, 629
BpuMI CCSGG 4 cut(s) 269, 270, 287, 938
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 4 cut(s) 267, 268, 285, 307
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 291
Bse1I ACTGG 1 cut(s) 748
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 2 cut(s) 176, 309
BseDI CCNNGG 4 cut(s) 267, 268, 285, 307
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 40, 291
BseMI GCAATG 1 cut(s) 636
BseNI ACTGG 1 cut(s) 748
BseXI GCAGC 2 cut(s) 538, 815
BseYI CCCAGC 1 cut(s) 40
BshFI GGCC 2 cut(s) 209, 395
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 4 cut(s) 206, 269, 287, 937
BslI CCNNNNNNNGG 2 cut(s) 40, 291
BsmAI GTCTC 2 cut(s) 412, 821
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 2 cut(s) 209, 395
Bso31I GGTCTC 1 cut(s) 412
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 4 cut(s) 178, 536, 960, 982
BspANI GGCC 2 cut(s) 209, 395
BspLI GGNNCC 2 cut(s) 46, 305
BspPI GGATC 2 cut(s) 186, 544
BspQI GCTCTTC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 636
BsrI ACTGG 1 cut(s) 748
BssECI CCNNGG 4 cut(s) 267, 268, 285, 307
BssMI GATC 4 cut(s) 178, 536, 960, 982
Bst2UI CCWGG 2 cut(s) 176, 309
Bst4CI ACNGT 2 cut(s) 303, 587
Bst6I CTCTTC 4 cut(s) 110, 137, 336, 408
BstC8I GCNNGC 2 cut(s) 378, 556
BstDEI CTNAG 2 cut(s) 59, 737
BstF5I GGATG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 4 cut(s) 181, 539, 963, 985
BstMAI GTCTC 2 cut(s) 412, 821
BstMBI GATC 4 cut(s) 178, 536, 960, 982
BstMWI GCNNNNNNNGC 3 cut(s) 392, 626, 974
BstNI CCWGG 2 cut(s) 176, 309
BstSCI CCNGG 6 cut(s) 174, 267, 268, 285, 307, 936
BstSFI CTRYAG 1 cut(s) 520
BstV1I GCAGC 2 cut(s) 538, 815
BstX2I RGATCY 1 cut(s) 536
BstYI RGATCY 1 cut(s) 536
BsuI GTATCC 1 cut(s) 693
BsuRI GGCC 2 cut(s) 209, 395
BtsCI GGATG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 3 cut(s) 369, 470, 741
Cac8I GCNNGC 2 cut(s) 378, 556
CaiI CAGNNNCTG 1 cut(s) 40
CfoI GCGC 1 cut(s) 376
Cfr9I CCCGGG 1 cut(s) 268
CviAII CATG 4 cut(s) 651, 704, 813, 923
DdeI CTNAG 2 cut(s) 59, 737
DpnI GATC 4 cut(s) 180, 538, 962, 984
DpnII GATC 4 cut(s) 178, 536, 960, 982
Eam1104I CTCTTC 4 cut(s) 110, 137, 336, 408
EarI CTCTTC 4 cut(s) 110, 137, 336, 408
Ecl136II GAGCTC 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 452
Eco88I CYCGRG 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 364
EcoRI GAATTC 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 174, 307
EcoT38I GRGCYC 1 cut(s) 366
FaeI CATG 4 cut(s) 654, 707, 816, 926
FalI AAGNNNNNCTT 2 cut(s) 547, 579
FatI CATG 4 cut(s) 650, 703, 812, 922
FbaI TGATCA 2 cut(s) 960, 982
FblI GTMKAC 1 cut(s) 515
Fnu4HI GCNGC 2 cut(s) 552, 829
FokI GGATG 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 2 cut(s) 552, 829
FspBI CTAG 3 cut(s) 341, 359, 626
GlaI GCGC 1 cut(s) 375
GluI GCNGC 2 cut(s) 552, 829
GsaI CCCAGC 1 cut(s) 44
HaeIII GGCC 2 cut(s) 209, 395
HapII CCGG 4 cut(s) 206, 269, 287, 937
HhaI GCGC 1 cut(s) 376
Hin1II CATG 4 cut(s) 654, 707, 816, 926
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HindIII AAGCTT 2 cut(s) 66, 477
HinfI GANTC 3 cut(s) 319, 427, 708
HpaII CCGG 4 cut(s) 206, 269, 287, 937
HphI GGTGA 2 cut(s) 323, 992
Hpy166II GTNNAC 1 cut(s) 516
Hpy188I TCNGA 3 cut(s) 432, 536, 987
Hpy188III TCNNGA 4 cut(s) 25, 637, 679, 883
Hpy8I GTNNAC 1 cut(s) 516
Hpy99I CGWCG 1 cut(s) 643
HpyAV CCTTC 2 cut(s) 427, 831
HpyCH4III ACNGT 2 cut(s) 303, 587
HpyCH4IV ACGT 4 cut(s) 236, 641, 657, 731
HpyCH4V TGCA 6 cut(s) 166, 380, 554, 831, 860, 930
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 626, 974
HpyF3I CTNAG 2 cut(s) 59, 737
HpySE526I ACGT 4 cut(s) 236, 641, 657, 731
Hsp92II CATG 4 cut(s) 654, 707, 816, 926
HspAI GCGC 1 cut(s) 374
Ksp22I TGATCA 2 cut(s) 960, 982
Kzo9I GATC 4 cut(s) 178, 536, 960, 982
LguI GCTCTTC 1 cut(s) 336
Lsp1109I GCAGC 2 cut(s) 538, 815
LweI GCATC 2 cut(s) 250, 629
MaeI CTAG 3 cut(s) 341, 359, 626
MaeII ACGT 4 cut(s) 236, 641, 657, 731
MaeIII GTNAC 3 cut(s) 280, 727, 796
MalI GATC 4 cut(s) 180, 538, 962, 984
MboI GATC 4 cut(s) 178, 536, 960, 982
MboII GAAGA 6 cut(s) 40, 97, 124, 323, 412, 425
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 1 cut(s) 536
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 4 cut(s) 170, 192, 381, 591
MlyI GAGTC 1 cut(s) 421
MnlI CCTC 5 cut(s) 138, 357, 406, 688, 752
MroXI GAANNNNTTC 1 cut(s) 890
MseI TTAA 2 cut(s) 240, 803
MspA1I CMGCKG 2 cut(s) 494, 551
MspI CCGG 4 cut(s) 206, 269, 287, 937
MspR9I CCNGG 6 cut(s) 176, 269, 270, 287, 309, 938
MunI CAATTG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 2 cut(s) 176, 309
MwoI GCNNNNNNNGC 3 cut(s) 392, 626, 974
NciI CCSGG 4 cut(s) 269, 270, 287, 938
NdeII GATC 4 cut(s) 178, 536, 960, 982
NlaIII CATG 4 cut(s) 654, 707, 816, 926
NlaIV GGNNCC 2 cut(s) 46, 305
PciSI GCTCTTC 1 cut(s) 336
PcsI WCGNNNNNNNCGW 1 cut(s) 900
PctI GAATGC 1 cut(s) 716
PdmI GAANNNNTTC 1 cut(s) 890
PfeI GAWTC 2 cut(s) 319, 708
PflMI CCANNNNNTGG 1 cut(s) 40
PfoI TCCNGGA 1 cut(s) 174
PkrI GCNGC 2 cut(s) 553, 830
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
PsiI TTATAA 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 2 cut(s) 174, 307
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 2 cut(s) 174, 307
PspN4I GGNNCC 2 cut(s) 46, 305
PstNI CAGNNNCTG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 536
PvuII CAGCTG 2 cut(s) 494, 551
SacI GAGCTC 1 cut(s) 366
SalI GTCGAC 1 cut(s) 514
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 240, 803
SatI GCNGC 2 cut(s) 552, 829
Sau3AI GATC 4 cut(s) 178, 536, 960, 982
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 6 cut(s) 176, 269, 270, 287, 309, 938
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 2 cut(s) 250, 629
SfcI CTRYAG 1 cut(s) 520
SmaI CCCGGG 1 cut(s) 270
Sse9I AATT 4 cut(s) 170, 192, 381, 591
SspMI CTAG 3 cut(s) 341, 359, 626
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 6 cut(s) 174, 267, 268, 285, 307, 936
TaaI ACNGT 2 cut(s) 303, 587
TaiI ACGT 4 cut(s) 239, 644, 660, 734
TaqI TCGA 4 cut(s) 398, 459, 515, 894
TaqII GACCGA 1 cut(s) 710
TasI AATT 4 cut(s) 170, 192, 381, 591
TfiI GAWTC 2 cut(s) 319, 708
Tru1I TTAA 2 cut(s) 240, 803
Tru9I TTAA 2 cut(s) 240, 803
TscAI CASTG 3 cut(s) 376, 477, 748
TseI GCWGC 2 cut(s) 551, 828
TspDTI ATGAA 2 cut(s) 675, 766
TspMI CCCGGG 1 cut(s) 268
TspRI CASTG 3 cut(s) 376, 477, 748
Van91I CCANNNNNTGG 1 cut(s) 40
XapI RAATTY 3 cut(s) 170, 192, 591
XmaI CCCGGG 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 890
XspI CTAG 3 cut(s) 341, 359, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.