Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011604

Physical Location & Seq

Genomic Coordinates Forward (+)

50515784 .. 50526966

Gene Structure 11183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG283700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCCCTACAAACAGCAACCCTGCTCAGTCCATGGAAGATACTTGCATGTTATTTTGAAAGCAAAATCTTCAGATGGGGTAATCCAAGACCTTAATGGAGATAGAATAAAAGCCCTACAATTTCTTACCAGAGGAAAGACCATTTGTGGGGAAAGGTTTCCAGTAATTGGACTTGCATTTTCTTCTGCCTTAGGGAAAGTGCATTGTAAAGAGCAAAATCTCAAGTCAGCTAAAAGTGAATTCCGAGACACTGTCGCCTTATTCAAGTGTATGGAAGACTTTCCCTGCGAAAAGTGTAAACTAAGGTTAGCGGGAAAGTTTTTAGAGAACAACACAGAGCTTACAGATGGTATTTCAGAAGACATGTCATTGCTAAATTGTATTTTGCAGAGCATGTCCCTCTTGAACTACTCTACAACATATTTTGGTGGTGTTTGCAAGCTCGTTCGGACAGAACTAGACGGACTATCTTTTCTGATTTGGCTGATAATGATCTTGCCAAGAATCTGCGTGCCTAGACTGTTATCTTGGTTGGTCCTGGCATTTGTGACAAGCAGAGAAGTTCCAGTACTTTTTCAGAAGGTTGCCAAACTGCTTGCTATGATTTGTTCATTGAACTATGCTACTCTTGACCATGACAAGCATTCTCCTTTTCTGTCTTGCCGAGATCTCGGGTATTTCACTCCAGAATGGGCATCATATTTCCATCAAGCTTCCTTGGCGATTAGAAGATTTGTGGTTTGGATATGCCAAGTATTTGCTGCTAGGAGAACGGTCAAGCTTCATGGCCTTGAACTCTGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006508 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0015630 GO:0016043 GO:0016787 GO:0019538 GO:0022402 GO:0022414 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044238 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045132 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0070011 GO:0071704 GO:0071840 GO:0072686 GO:0098813 GO:0140013 GO:0140096 GO:1901564 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

Peptidase_C50

Protein Analysis

268

Amino Acids

30.42

Weight (kDa)

9.02

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1226200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113201
rosa_laevigata	RLG00000013598 RLG00000032863
rosa_roxburghii	Rroxscaffold_7G00200920
rosa_rugosa	Rorug01G0041600 Rorug01G0041700 Rorug01G0041800 Rorug01G0041900 Rorug03G0217700
rosa_samantha	Rh1BG050100 Rh2AG240400 Rh2CG244500 Rh2DG248400 Rh4AG281100 Rh4BG286600 Rh4BG286700 Rh4DG283700 Rh5DG504300
rosa_wichuraiana	Rw0G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AciI	CCGC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	1 cut(s)	570
AfiI	CCNNNNNNNGG	2 cut(s)	147, 167
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	5 cut(s)	58, 265, 406, 616, 794
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	5 cut(s)	230, 340, 442, 713, 781
AluI	AGCT	5 cut(s)	230, 340, 442, 713, 781
Alw26I	GTCTC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	671
AoxI	GGCC	1 cut(s)	787
ApeKI	GCWGC	1 cut(s)	761
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	2 cut(s)	156, 279
AspS9I	GGNCC	1 cut(s)	535
AvaI	CYCGRG	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	535
AxyI	CCTNAGG	1 cut(s)	190
BarI	GAAGNNNNNNTAC	2 cut(s)	552, 584
BbsI	GAAGAC	2 cut(s)	282, 366
BbvI	GCAGC	1 cut(s)	748
BccI	CCATC	3 cut(s)	68, 341, 714
BciT130I	CCWGG	1 cut(s)	539
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	3 cut(s)	458, 516, 765
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	1 cut(s)	762
BlsI	GCNGC	1 cut(s)	763
BmcAI	AGTACT	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	1 cut(s)	535
BmeT110I	CYCGRG	1 cut(s)	671
BmgT120I	GGNCC	1 cut(s)	535
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	704
BpiI	GAAGAC	2 cut(s)	282, 366
BpmI	CTGGAG	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	31, 717
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 167
Bse1I	ACTGG	2 cut(s)	161, 566
Bse21I	CCTNAGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	368
Bse8I	GATNNNNATC	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	2 cut(s)	31, 717
BseJI	GATNNNNATC	1 cut(s)	491
BseLI	CCNNNNNNNGG	2 cut(s)	147, 167
BseMI	GCAATG	1 cut(s)	368
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	161, 566
BseXI	GCAGC	1 cut(s)	748
BshFI	GGCC	1 cut(s)	789
BsiHKCI	CYCGRG	1 cut(s)	671
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	147, 167
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	1 cut(s)	789
BsoBI	CYCGRG	1 cut(s)	671
Bsp143I	GATC	2 cut(s)	492, 667
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	1 cut(s)	311
BspANI	GGCC	1 cut(s)	789
BspCNI	CTCAG	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	161, 566
BssECI	CCNNGG	2 cut(s)	31, 717
BssMI	GATC	2 cut(s)	492, 667
BssT1I	CCWWGG	2 cut(s)	31, 717
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	3 cut(s)	253, 522, 775
BstC8I	GCNNGC	3 cut(s)	440, 512, 597
BstDEI	CTNAG	3 cut(s)	25, 190, 302
BstDSI	CCRYGG	1 cut(s)	31
BstKTI	GATC	2 cut(s)	495, 670
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	2 cut(s)	492, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	719
BstNI	CCWGG	1 cut(s)	539
BstNSI	RCATGY	3 cut(s)	50, 367, 397
BstSCI	CCNGG	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	748
BstV2I	GAAGAC	2 cut(s)	282, 366
BstX2I	RGATCY	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	667
Bsu36I	CCTNAGG	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	789
BtgI	CCRYGG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	3 cut(s)	440, 512, 597
Cfr13I	GGNCC	1 cut(s)	535
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	6 cut(s)	32, 47, 364, 394, 635, 785
CviJI	RGCY	8 cut(s)	113, 230, 340, 442, 484, 713, 781, 789
CviKI_1	RGCY	8 cut(s)	113, 230, 340, 442, 484, 713, 781, 789
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	3 cut(s)	25, 190, 302
DpnI	GATC	2 cut(s)	494, 669
DpnII	GATC	2 cut(s)	492, 667
Eco130I	CCWWGG	2 cut(s)	31, 717
Eco47I	GGWCC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	54
Eco81I	CCTNAGG	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	671
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	31, 717
ErhI	CCWWGG	2 cut(s)	31, 717
FaeI	CATG	6 cut(s)	35, 50, 367, 397, 638, 788
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	6 cut(s)	31, 46, 363, 393, 634, 784
FauI	CCCGC	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	762
Fsp4HI	GCNGC	1 cut(s)	762
FspBI	CTAG	3 cut(s)	458, 516, 765
GluI	GCNGC	1 cut(s)	762
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	1 cut(s)	789
Hin1II	CATG	6 cut(s)	35, 50, 367, 397, 638, 788
HindIII	AAGCTT	2 cut(s)	711, 779
HinfI	GANTC	1 cut(s)	504
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	6 cut(s)	73, 245, 358, 450, 477, 579
Hpy188III	TCNNGA	3 cut(s)	403, 629, 686
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	1 cut(s)	574
HpyCH4III	ACNGT	3 cut(s)	253, 522, 775
HpyCH4V	TGCA	5 cut(s)	46, 176, 202, 388, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	719
HpyF3I	CTNAG	3 cut(s)	25, 190, 302
Hsp92II	CATG	6 cut(s)	35, 50, 367, 397, 638, 788
Kzo9I	GATC	2 cut(s)	492, 667
LpnPI	CCDG	8 cut(s)	34, 142, 174, 298, 524, 551, 579, 699
Lsp1109I	GCAGC	1 cut(s)	748
LweI	GCATC	1 cut(s)	704
MaeI	CTAG	3 cut(s)	458, 516, 765
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	2 cut(s)	494, 669
MboI	GATC	2 cut(s)	492, 667
MboII	GAAGA	6 cut(s)	48, 60, 174, 287, 371, 741
MflI	RGATCY	1 cut(s)	667
MluCI	AATT	4 cut(s)	119, 165, 239, 376
MnlI	CCTC	2 cut(s)	125, 410
MroXI	GAANNNNTTC	2 cut(s)	156, 279
MseI	TTAA	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	539
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	1 cut(s)	719
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	2 cut(s)	492, 667
NlaIII	CATG	6 cut(s)	35, 50, 367, 397, 638, 788
NmeAIII	GCCGAG	1 cut(s)	689
NmuCI	GTSAC	1 cut(s)	547
NspI	RCATGY	3 cut(s)	50, 367, 397
PciI	ACATGT	1 cut(s)	363
PctI	GAATGC	1 cut(s)	643
PdmI	GAANNNNTTC	2 cut(s)	156, 279
PfeI	GAWTC	1 cut(s)	504
PflFI	GACNNNGTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	763
PscI	ACATGT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	537
PspPI	GGNCC	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	667
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	762
Sau3AI	GATC	2 cut(s)	492, 667
Sau96I	GGNCC	1 cut(s)	535
ScaI	AGTACT	1 cut(s)	570
ScrFI	CCNGG	1 cut(s)	539
SetI	ASST	9 cut(s)	93, 158, 232, 308, 342, 444, 585, 715, 783
SfaNI	GCATC	1 cut(s)	704
SinI	GGWCC	1 cut(s)	535
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	4 cut(s)	119, 165, 239, 376
SsiI	CCGC	1 cut(s)	311
SspMI	CTAG	3 cut(s)	458, 516, 765
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	2 cut(s)	31, 717
TaaI	ACNGT	3 cut(s)	253, 522, 775
TasI	AATT	4 cut(s)	119, 165, 239, 376
TatI	WGTACW	1 cut(s)	568
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	1 cut(s)	761
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	2 cut(s)	600, 773
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	535
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	3 cut(s)	50, 367, 397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XmnI	GAANNNNTTC	2 cut(s)	156, 279
XspI	CTAG	3 cut(s)	458, 516, 765
ZrmI	AGTACT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.