Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0011604

Physical Location & Seq

Genomic Coordinates Forward (+)

6904906 .. 6911204

Gene Structure 6299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG050100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCGGCTCTTAAGGATATTACTAATGACAAAATCTCCTGCTATGATTGGAATCAGGAAGACTAATGCTACTAAGACATCAGATGTTAAGTCTTCCGTCCCAACTCAGCCCAAGAAACACTCTCTTTTGAAGCATGATCCAGCGAGGAAACCTCCATTTCCAAGTTTAAATGCTCTGATATCAATGGCTCTAAGCTATGCTTTGAAGGCCATAGAAACTCGAAAAGAATTATACGATAAGTATTTTGCTGCTAAAGATAGTCAGAAGACTGATATGTGGACAAAAGTGTGGTCATCGGATACTGCAGACTTCGGGTCATTTTGTTTAAGTCCATGGATCATCCTTAGATGTTATCTTGAAAGCTTGCTTCAGTCCCGTTCTGTTCAACAGTTAGTGGATTTGAAGTATCAATTCTTTTGCAGGCGTCTTGGTCTCAGTCTACTTAGACGATCAGGAAATCATGCTAAAGTTTCTGAAACGGCTGATATTTTTGGGAGAAGCCTTCATTTCTTATTCAACAGAGCTTATACCTCCAACGGTGACTGGACTATTTATAATTCATTATTGACACGGCAGGTCCAAGGGACTGCCTTGGCAATTGAGCAAGCAGAGCTTCTATACTACGCAACCTTTTTGAGAATTTGTGCTAGTGATACCAGTTATGTTATTGATAGAGGAGGAAACTTGACTATATATGCTGATGCTAGCCTTGGTGCTTTCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0006508 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0007049 GO:0007059 GO:0007063 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010564 GO:0010638 GO:0015630 GO:0016043 GO:0016049 GO:0016192 GO:0016787 GO:0019538 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032940 GO:0032989 GO:0033043 GO:0033044 GO:0033045 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044238 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045132 GO:0045787 GO:0045876 GO:0046903 GO:0048285 GO:0048316 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051726 GO:0051983 GO:0051984 GO:0060560 GO:0061458 GO:0061640 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072686 GO:0090068 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:0140096 GO:1901564 GO:1902410 GO:1903046 GO:1903047 GO:2000114 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

Peptidase_C50

Protein Analysis

241

Amino Acids

27.28

Weight (kDa)

9.67

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1226200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113201
rosa_laevigata	RLG00000013598 RLG00000032863
rosa_roxburghii	Rroxscaffold_7G00200920
rosa_rugosa	Rorug01G0041600 Rorug01G0041700 Rorug01G0041800 Rorug01G0041900 Rorug03G0217700
rosa_samantha	Rh1BG050100 Rh2AG240400 Rh2CG244500 Rh2DG248400 Rh4AG281100 Rh4BG286600 Rh4BG286700 Rh4DG283700 Rh5DG504300
rosa_wichuraiana	Rw0G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
Acc36I	ACCTGC	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	439
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	2 cut(s)	131, 344
AcsI	RAATTY	1 cut(s)	639
AcuI	CTGAAG	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	424
AflII	CTTAAG	1 cut(s)	10
AgsI	TTSAA	6 cut(s)	130, 205, 359, 386, 403, 517
AhdI	GACNNNNNGTC	1 cut(s)	313
AluBI	AGCT	4 cut(s)	195, 363, 524, 613
AluI	AGCT	4 cut(s)	195, 363, 524, 613
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	2 cut(s)	131, 344
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	639
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AspS9I	GGNCC	1 cut(s)	577
AsuHPI	GGTGA	1 cut(s)	551
AsuNHI	GCTAGC	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	577
BbsI	GAAGAC	3 cut(s)	65, 84, 272
BbvI	GCAGC	1 cut(s)	235
BceAI	ACGGC	2 cut(s)	495, 587
BciVI	GTATCC	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	2 cut(s)	648, 705
BfmI	CTRYAG	1 cut(s)	303
BfrI	CTTAAG	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	565
BfuI	GTATCC	1 cut(s)	292
BisI	GCNGC	2 cut(s)	5, 249
BlsI	GCNGC	2 cut(s)	6, 250
Bme18I	GGWCC	1 cut(s)	577
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	577
BmsI	GCATC	1 cut(s)	691
BmtI	GCTAGC	1 cut(s)	708
BpiI	GAAGAC	3 cut(s)	65, 84, 272
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
BsaBI	GATNNNNATC	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	424
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	4 cut(s)	332, 580, 591, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bse1I	ACTGG	2 cut(s)	548, 657
Bse8I	GATNNNNATC	1 cut(s)	50
BseDI	CCNNGG	4 cut(s)	332, 580, 591, 709
BseGI	GGATG	1 cut(s)	339
BseJI	GATNNNNATC	1 cut(s)	50
BseMII	CTCAG	2 cut(s)	119, 448
BseNI	ACTGG	2 cut(s)	548, 657
BseRI	GAGGAG	1 cut(s)	690
BseXI	GCAGC	1 cut(s)	235
BshFI	GGCC	1 cut(s)	209
BslFI	GGGAC	3 cut(s)	83, 358, 598
BsmAI	GTCTC	1 cut(s)	437
BsmFI	GGGAC	3 cut(s)	83, 358, 598
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	437
Bsp143I	GATC	3 cut(s)	136, 336, 449
Bsp19I	CCATGG	1 cut(s)	332
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	2 cut(s)	118, 447
BspMAI	CTGCAG	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	565
BspOI	GCTAGC	1 cut(s)	708
BspPI	GGATC	2 cut(s)	131, 344
BspTI	CTTAAG	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	437
BsrI	ACTGG	2 cut(s)	548, 657
BssECI	CCNNGG	4 cut(s)	332, 580, 591, 709
BssMI	GATC	3 cut(s)	136, 336, 449
BssNI	GRCGYC	1 cut(s)	424
BssT1I	CCWWGG	4 cut(s)	332, 580, 591, 709
Bst4CI	ACNGT	2 cut(s)	390, 539
BstACI	GRCGYC	1 cut(s)	424
BstAFI	CTTAAG	1 cut(s)	10
BstC8I	GCNNGC	4 cut(s)	365, 422, 606, 706
BstDEI	CTNAG	6 cut(s)	72, 105, 191, 344, 434, 443
BstDSI	CCRYGG	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	339
BstKTI	GATC	3 cut(s)	139, 339, 452
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	3 cut(s)	136, 336, 449
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 610
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	235
BstV2I	GAAGAC	3 cut(s)	65, 84, 272
BsuI	GTATCC	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	339
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	4 cut(s)	365, 422, 606, 706
Cfr13I	GGNCC	1 cut(s)	577
CseI	GACGC	1 cut(s)	413
CviAII	CATG	3 cut(s)	134, 333, 461
DdeI	CTNAG	6 cut(s)	72, 105, 191, 344, 434, 443
DpnI	GATC	3 cut(s)	138, 338, 451
DpnII	GATC	3 cut(s)	136, 336, 449
DraI	TTTAAA	1 cut(s)	168
DriI	GACNNNNNGTC	1 cut(s)	313
Eam1105I	GACNNNNNGTC	1 cut(s)	313
Eco130I	CCWWGG	4 cut(s)	332, 580, 591, 709
Eco31I	GGTCTC	1 cut(s)	437
Eco32I	GATATC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	353
EcoRV	GATATC	1 cut(s)	180
EcoT14I	CCWWGG	4 cut(s)	332, 580, 591, 709
ErhI	CCWWGG	4 cut(s)	332, 580, 591, 709
FaeI	CATG	3 cut(s)	137, 336, 464
FalI	AAGNNNNNCTT	4 cut(s)	184, 216, 597, 629
FaqI	GGGAC	3 cut(s)	83, 358, 598
FatI	CATG	3 cut(s)	133, 332, 460
FblI	GTMKAC	1 cut(s)	439
Fnu4HI	GCNGC	2 cut(s)	5, 249
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	2 cut(s)	5, 249
FspBI	CTAG	2 cut(s)	648, 705
GluI	GCNGC	2 cut(s)	5, 249
HaeIII	GGCC	1 cut(s)	209
HgaI	GACGC	1 cut(s)	413
Hin1I	GRCGYC	1 cut(s)	424
Hin1II	CATG	3 cut(s)	137, 336, 464
HindIII	AAGCTT	1 cut(s)	361
HinfI	GANTC	1 cut(s)	51
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	2 cut(s)	279, 440
Hpy188I	TCNGA	5 cut(s)	82, 177, 264, 298, 475
Hpy188III	TCNNGA	3 cut(s)	55, 356, 453
Hpy8I	GTNNAC	2 cut(s)	279, 440
HpyAV	CCTTC	2 cut(s)	199, 512
HpyCH4III	ACNGT	2 cut(s)	390, 539
HpyCH4V	TGCA	2 cut(s)	305, 420
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 610
HpyF3I	CTNAG	6 cut(s)	72, 105, 191, 344, 434, 443
Hsp92I	GRCGYC	1 cut(s)	424
Hsp92II	CATG	3 cut(s)	137, 336, 464
Kzo9I	GATC	3 cut(s)	136, 336, 449
LpnPI	CCDG	8 cut(s)	40, 51, 153, 406, 438, 529, 560, 670
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	2 cut(s)	648, 705
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	3 cut(s)	138, 338, 451
MboI	GATC	3 cut(s)	136, 336, 449
MboII	GAAGA	3 cut(s)	70, 84, 277
MfeI	CAATTG	1 cut(s)	597
MluCI	AATT	5 cut(s)	227, 410, 556, 597, 639
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	5 cut(s)	138, 162, 541, 668, 671
MseI	TTAA	4 cut(s)	11, 87, 167, 326
MspCI	CTTAAG	1 cut(s)	10
MunI	CAATTG	1 cut(s)	597
MwoI	GCNNNNNNNGC	2 cut(s)	206, 610
NcoI	CCATGG	1 cut(s)	332
NdeII	GATC	3 cut(s)	136, 336, 449
NheI	GCTAGC	1 cut(s)	704
NlaIII	CATG	3 cut(s)	137, 336, 464
NmuCI	GTSAC	1 cut(s)	539
PfeI	GAWTC	1 cut(s)	51
PkrI	GCNGC	2 cut(s)	6, 250
PsiI	TTATAA	1 cut(s)	555
PspPI	GGNCC	1 cut(s)	577
PstI	CTGCAG	1 cut(s)	307
SaqAI	TTAA	4 cut(s)	11, 87, 167, 326
SatI	GCNGC	2 cut(s)	5, 249
Sau3AI	GATC	3 cut(s)	136, 336, 449
Sau96I	GGNCC	1 cut(s)	577
SetI	ASST	8 cut(s)	154, 197, 365, 526, 533, 579, 615, 632
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	577
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	5 cut(s)	227, 410, 556, 597, 639
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	648, 705
StyI	CCWWGG	4 cut(s)	332, 580, 591, 709
TaaI	ACNGT	2 cut(s)	390, 539
TaqI	TCGA	1 cut(s)	220
TasI	AATT	5 cut(s)	227, 410, 556, 597, 639
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	51
Tru1I	TTAA	4 cut(s)	11, 87, 167, 326
Tru9I	TTAA	4 cut(s)	11, 87, 167, 326
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	2 cut(s)	494, 549
TspGWI	ACGGA	1 cut(s)	85
Vha464I	CTTAAG	1 cut(s)	10
VpaK11BI	GGWCC	1 cut(s)	577
XapI	RAATTY	1 cut(s)	639
XmiI	GTMKAC	1 cut(s)	439
XspI	CTAG	2 cut(s)	648, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.