Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011604

Physical Location & Seq

Genomic Coordinates Forward (+)

26245275 .. 26251485

Gene Structure 6211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG240400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGTCGCATTTTCCTCGCTTTTCTCTAATTCGCCAAAGATGCAGTCCACGCCGGAGCTCCGCCTTGCCCCTCCTCCTTCTCTTTTCTCCTCCCACCTTGACGATGTTATTGCTCAACAAGTATTTGTGCTCCTGATAGAGAAAATAAATGCGAAAAGGTTGAATAGAGGGGATGTTGATTCAAACACTCAGCAGCGGTCAACTGAAGCAGTAGGGCATTCTAATTCAATTGTTGCATACCACATATTTCTCGGCATCAAAGATACTGGTATGATGCATACACAGTTGAATCAGTTCTTGCTCAGCCACCAGCTCACCACCGCAAACTACTCCAATTCTCCTACACTACTAGTCGCTGCCACATGCATAAATAGATCACCAAAGCAGGGCTCCTTCAGTTTGGCTCTAATCTATGCTTTGAAGGCCATAGAAACTCGAAAAGAATTATACGATAAATTAGATCTTGATGATCCAATAGAGAAAAAGGACAAAGCATCATTATCGGAGCAGCTGAAGTCTATGCCTAAGATTTCTATTGATTGTGTGGTCCAAGGGACTGCCTTGGCAGTTGAGCAAGCAGAGCTTCTATACTACGCAACCTTTATGAGAATCATACCAGTTATGTTATTGATAGAGAAGGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chorein_N

Protein Analysis

215

Amino Acids

23.93

Weight (kDa)

6.52

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1226200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113201
rosa_laevigata	RLG00000013598 RLG00000032863
rosa_roxburghii	Rroxscaffold_7G00200920
rosa_rugosa	Rorug01G0041600 Rorug01G0041700 Rorug01G0041800 Rorug01G0041900 Rorug03G0217700
rosa_samantha	Rh1BG050100 Rh2AG240400 Rh2CG244500 Rh2DG248400 Rh4AG281100 Rh4BG286600 Rh4BG286700 Rh4DG283700 Rh5DG504300
rosa_wichuraiana	Rw0G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	61, 196, 321
AclWI	GGATC	1 cut(s)	464
AcuI	CTGAAG	3 cut(s)	225, 379, 533
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	5 cut(s)	163, 183, 228, 289, 421
AhlI	ACTAGT	1 cut(s)	349
AluBI	AGCT	4 cut(s)	58, 313, 511, 583
AluI	AGCT	4 cut(s)	58, 313, 511, 583
Alw21I	GWGCWC	2 cut(s)	60, 132
AlwI	GGATC	1 cut(s)	464
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	3 cut(s)	193, 356, 508
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
Asp700I	GAANNNNTTC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	307, 369
AvaII	GGWCC	1 cut(s)	547
BanII	GRGCYC	2 cut(s)	60, 392
Bbv12I	GWGCWC	2 cut(s)	60, 132
BbvI	GCAGC	3 cut(s)	205, 343, 520
BcgI	CGANNNNNNTGC	5 cut(s)	31, 92, 126, 483, 517
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	1 cut(s)	350
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	3 cut(s)	194, 357, 509
BlpI	GCTNAGC	1 cut(s)	302
BlsI	GCNGC	3 cut(s)	195, 358, 510
Bme18I	GGWCC	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	1 cut(s)	391
BmsI	GCATC	4 cut(s)	30, 264, 264, 503
Bpu1102I	GCTNAGC	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	550, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse1I	ACTGG	2 cut(s)	271, 617
BseDI	CCNNGG	2 cut(s)	550, 561
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMII	CTCAG	2 cut(s)	203, 316
BseNI	ACTGG	2 cut(s)	271, 617
BseRI	GAGGAG	2 cut(s)	63, 79
BseXI	GCAGC	3 cut(s)	205, 343, 520
BshFI	GGCC	1 cut(s)	425
BsiHKAI	GWGCWC	2 cut(s)	60, 132
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	425
Bsp1286I	GDGCHC	3 cut(s)	60, 132, 392
Bsp143I	GATC	3 cut(s)	374, 460, 469
Bsp1720I	GCTNAGC	1 cut(s)	302
BspACI	CCGC	3 cut(s)	61, 196, 321
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	2 cut(s)	202, 315
BspLI	GGNNCC	1 cut(s)	391
BspPI	GGATC	1 cut(s)	464
BsrI	ACTGG	2 cut(s)	271, 617
BssECI	CCNNGG	2 cut(s)	550, 561
BssMI	GATC	3 cut(s)	374, 460, 469
BssT1I	CCWWGG	2 cut(s)	550, 561
Bst4CI	ACNGT	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	3 cut(s)	189, 302, 525
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	3 cut(s)	377, 463, 472
BstMBI	GATC	3 cut(s)	374, 460, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 49, 422, 580
BstNSI	RCATGY	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	205, 343, 520
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	576
Cfr13I	GGNCC	1 cut(s)	547
CviAII	CATG	1 cut(s)	363
CviJI	RGCY	8 cut(s)	58, 306, 313, 390, 404, 425, 511, 583
CviKI_1	RGCY	8 cut(s)	58, 306, 313, 390, 404, 425, 511, 583
DdeI	CTNAG	3 cut(s)	189, 302, 525
DpnI	GATC	3 cut(s)	376, 462, 471
DpnII	GATC	3 cut(s)	374, 460, 469
EciI	GGCGGA	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	550, 561
Eco24I	GRGCYC	2 cut(s)	60, 392
Eco47I	GGWCC	1 cut(s)	547
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	3 cut(s)	225, 379, 533
EcoICRI	GAGCTC	1 cut(s)	58
EcoT14I	CCWWGG	2 cut(s)	550, 561
EcoT22I	ATGCAT	2 cut(s)	279, 368
EcoT38I	GRGCYC	2 cut(s)	60, 392
ErhI	CCWWGG	2 cut(s)	550, 561
FaeI	CATG	1 cut(s)	366
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	1 cut(s)	362
Fnu4HI	GCNGC	3 cut(s)	194, 357, 509
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	2 cut(s)	60, 392
Fsp4HI	GCNGC	3 cut(s)	194, 357, 509
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	3 cut(s)	194, 357, 509
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	1 cut(s)	53
Hin1II	CATG	1 cut(s)	366
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	3 cut(s)	179, 289, 609
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	2 cut(s)	307, 369
Hpy166II	GTNNAC	2 cut(s)	48, 201
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	2 cut(s)	133, 464
Hpy8I	GTNNAC	2 cut(s)	48, 201
HpyAV	CCTTC	4 cut(s)	87, 403, 415, 631
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4V	TGCA	4 cut(s)	43, 236, 277, 366
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 49, 422, 580
HpyF3I	CTNAG	3 cut(s)	189, 302, 525
Hsp92II	CATG	1 cut(s)	366
Kzo9I	GATC	3 cut(s)	374, 460, 469
LmnI	GCTCC	5 cut(s)	55, 63, 135, 395, 505
LpnPI	CCDG	6 cut(s)	66, 146, 252, 323, 371, 630
Lsp1109I	GCAGC	3 cut(s)	205, 343, 520
LweI	GCATC	4 cut(s)	30, 264, 264, 503
MaeI	CTAG	1 cut(s)	350
MalI	GATC	3 cut(s)	376, 462, 471
MboI	GATC	3 cut(s)	374, 460, 469
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	3 cut(s)	60, 132, 392
MluCI	AATT	6 cut(s)	28, 223, 228, 334, 443, 455
MnlI	CCTC	5 cut(s)	25, 81, 84, 100, 161
Mph1103I	ATGCAT	2 cut(s)	279, 368
MroXI	GAANNNNTTC	1 cut(s)	293
MspA1I	CMGCKG	2 cut(s)	196, 511
MspI	CCGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	217
MwoI	GCNNNNNNNGC	4 cut(s)	40, 49, 422, 580
NdeII	GATC	3 cut(s)	374, 460, 469
NlaIII	CATG	1 cut(s)	366
NlaIV	GGNNCC	1 cut(s)	391
NmeAIII	GCCGAG	1 cut(s)	231
NsiI	ATGCAT	2 cut(s)	279, 368
NspI	RCATGY	1 cut(s)	366
PctI	GAATGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	3 cut(s)	179, 289, 609
PkrI	GCNGC	3 cut(s)	195, 358, 510
Psp124BI	GAGCTC	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	511
SacI	GAGCTC	1 cut(s)	60
SatI	GCNGC	3 cut(s)	194, 357, 509
Sau3AI	GATC	3 cut(s)	374, 460, 469
Sau96I	GGNCC	1 cut(s)	547
SduI	GDGCHC	3 cut(s)	60, 132, 392
SetI	ASST	7 cut(s)	60, 99, 161, 315, 513, 585, 602
SfaNI	GCATC	4 cut(s)	30, 264, 264, 503
SinI	GGWCC	1 cut(s)	547
SpeI	ACTAGT	1 cut(s)	349
Sse9I	AATT	6 cut(s)	28, 223, 228, 334, 443, 455
SsiI	CCGC	3 cut(s)	61, 196, 321
SspMI	CTAG	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	60
StyI	CCWWGG	2 cut(s)	550, 561
TaaI	ACNGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	436
TasI	AATT	6 cut(s)	28, 223, 228, 334, 443, 455
TfiI	GAWTC	3 cut(s)	179, 289, 609
TseI	GCWGC	3 cut(s)	193, 356, 508
VpaK11BI	GGWCC	1 cut(s)	547
XceI	RCATGY	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	1 cut(s)	350
Zsp2I	ATGCAT	2 cut(s)	279, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.