Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011604

Physical Location & Seq

Genomic Coordinates Forward (+)

33858415 .. 33862715

Gene Structure 4301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013598

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGTAGCGAGTCTCCCCATGACATTTTTTCTCAACGACGATAACGCCGACCTCAATGACCATCATGGTTGTTTCCGTGACCGTGACTGCTATGCCTTTCTCGATAACCGCAATGCCAGCGTCGATGATAGCTACACTAGCACCGATGAACACTATGCTAGCGTCGATGACGGTGACTTCTCGATGACCACGATGAAGGCGTCGATGATTACCACGCCAGCCCCAATGACCATCTTAGAGTGCGTAGAGCTCGAAACCAGTCATTTAAAGGGTGAAGAACATGAACTTGTCATATCCAATGCTAGAAATGGTGCCGATCCTCTTCTTGAACTGGTTCTCGCTCAGGCTCTAACCTATGCTTTGAAGGCCATAGAAACTCGAAAAGAATTATACGATAAGTATTTTGCTGCTAAAGATAGTAAGAAGACTGATATGTGGACAAAAGTGTGGTCATCGGATACTGCAGACTTCGGGCGTCTTGCTTGCCTTTTCCTTACCTTTGTAAATATATTGAACCTTTTCTTCACGTTTTCAGGAAATCATGCTGAAGTTTCTGAAACGGCTGATATTTTTGGGAGAAGCCTTAATTTCTTATTCAACAGAGCTTATACCTCCAACGGTGACTGGACTATTTATAATTCATTATTGACACGGCAGGTCCAAGGGACTGCCTTGGCAGTTGAGCAAGCAGAGCTTCTATACTACGCAACCTTTGTGAGAATCATACCAGTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

246

Amino Acids

27.65

Weight (kDa)

4.62

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1226200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113201
rosa_laevigata	RLG00000013598 RLG00000032863
rosa_roxburghii	Rroxscaffold_7G00200920
rosa_rugosa	Rorug01G0041600 Rorug01G0041700 Rorug01G0041800 Rorug01G0041900 Rorug03G0217700
rosa_samantha	Rh1BG050100 Rh2AG240400 Rh2CG244500 Rh2DG248400 Rh4AG281100 Rh4BG286600 Rh4BG286700 Rh4DG283700 Rh5DG504300
rosa_wichuraiana	Rw0G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
Acc36I	ACCTGC	1 cut(s)	646
AccB1I	GGYRCC	1 cut(s)	311
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	567
AcyI	GRCGYC	2 cut(s)	200, 475
AgsI	TTSAA	4 cut(s)	329, 364, 514, 598
AluBI	AGCT	4 cut(s)	132, 250, 605, 694
AluI	AGCT	4 cut(s)	132, 250, 605, 694
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	1 cut(s)	407
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
Asp700I	GAANNNNTTC	2 cut(s)	333, 518
AspS9I	GGNCC	1 cut(s)	658
AsuHPI	GGTGA	3 cut(s)	185, 284, 632
AsuNHI	GCTAGC	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	2 cut(s)	69, 239
BceAI	ACGGC	2 cut(s)	576, 668
BciVI	GTATCC	1 cut(s)	451
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	3 cut(s)	138, 159, 303
BfmI	CTRYAG	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	646
BfuI	GTATCC	1 cut(s)	451
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme18I	GGWCC	1 cut(s)	658
BmgT120I	GGNCC	1 cut(s)	658
BmiI	GGNNCC	1 cut(s)	313
BmtI	GCTAGC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	431
Bpu10I	CCTNAGC	1 cut(s)	342
BsaHI	GRCGYC	2 cut(s)	200, 475
BsaJI	CCNNGG	2 cut(s)	661, 672
Bse1I	ACTGG	4 cut(s)	258, 336, 629, 728
Bse3DI	GCAATG	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	661, 672
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	4 cut(s)	258, 336, 629, 728
BseXI	GCAGC	1 cut(s)	394
BshFI	GGCC	1 cut(s)	368
BshNI	GGYRCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	679
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	679
BsnI	GGCC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	313
BspMAI	CTGCAG	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	646
BspOI	GCTAGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	4 cut(s)	258, 336, 629, 728
BssECI	CCNNGG	2 cut(s)	661, 672
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	2 cut(s)	200, 475
BssT1I	CCWWGG	2 cut(s)	661, 672
Bst4CI	ACNGT	3 cut(s)	83, 173, 620
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	2 cut(s)	200, 475
BstC8I	GCNNGC	5 cut(s)	118, 160, 219, 484, 687
BstDEI	CTNAG	2 cut(s)	235, 342
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 138, 365, 691
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	431
BsuI	GTATCC	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	368
BveI	ACCTGC	1 cut(s)	646
Cac8I	GCNNGC	5 cut(s)	118, 160, 219, 484, 687
Cfr13I	GGNCC	1 cut(s)	658
CseI	GACGC	4 cut(s)	109, 151, 189, 464
CviAII	CATG	4 cut(s)	19, 65, 281, 542
CviJI	RGCY	9 cut(s)	132, 221, 250, 347, 368, 563, 582, 605, 694
CviKI_1	RGCY	9 cut(s)	132, 221, 250, 347, 368, 563, 582, 605, 694
DdeI	CTNAG	2 cut(s)	235, 342
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DraI	TTTAAA	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	2 cut(s)	661, 672
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	658
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	567
EcoICRI	GAGCTC	1 cut(s)	250
EcoT14I	CCWWGG	2 cut(s)	661, 672
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	2 cut(s)	661, 672
FaeI	CATG	4 cut(s)	22, 68, 284, 545
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	4 cut(s)	18, 64, 280, 541
Fnu4HI	GCNGC	1 cut(s)	408
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	3 cut(s)	138, 159, 303
GluI	GCNGC	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	368
HgaI	GACGC	4 cut(s)	109, 151, 189, 464
Hin1I	GRCGYC	2 cut(s)	200, 475
Hin1II	CATG	4 cut(s)	22, 68, 284, 545
HinfI	GANTC	2 cut(s)	10, 720
HphI	GGTGA	3 cut(s)	185, 284, 632
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188I	TCNGA	2 cut(s)	457, 556
Hpy188III	TCNNGA	4 cut(s)	101, 181, 326, 534
Hpy8I	GTNNAC	1 cut(s)	438
Hpy99I	CGWCG	4 cut(s)	41, 125, 167, 205
HpyAV	CCTTC	2 cut(s)	190, 358
HpyCH4III	ACNGT	3 cut(s)	83, 173, 620
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 138, 365, 691
HpyF3I	CTNAG	2 cut(s)	235, 342
HpySE526I	ACGT	1 cut(s)	527
Hsp92I	GRCGYC	2 cut(s)	200, 475
Hsp92II	CATG	4 cut(s)	22, 68, 284, 545
Kzo9I	GATC	1 cut(s)	316
LpnPI	CCDG	8 cut(s)	130, 231, 271, 317, 329, 519, 610, 641
Lsp1109I	GCAGC	1 cut(s)	394
MaeI	CTAG	3 cut(s)	138, 159, 303
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	4 cut(s)	77, 83, 173, 620
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	4 cut(s)	287, 314, 436, 514
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	3 cut(s)	386, 586, 637
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	639
MnlI	CCTC	3 cut(s)	62, 330, 622
MroXI	GAANNNNTTC	2 cut(s)	333, 518
MseI	TTAA	2 cut(s)	266, 585
MwoI	GCNNNNNNNGC	4 cut(s)	117, 138, 365, 691
NdeII	GATC	1 cut(s)	316
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	4 cut(s)	22, 68, 284, 545
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	4 cut(s)	77, 83, 173, 620
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 188, 197
PdmI	GAANNNNTTC	2 cut(s)	333, 518
PfeI	GAWTC	1 cut(s)	720
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PsiI	TTATAA	1 cut(s)	636
Psp124BI	GAGCTC	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	658
PstI	CTGCAG	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	266, 585
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	1 cut(s)	658
SchI	GAGTC	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	1 cut(s)	658
Sse9I	AATT	3 cut(s)	386, 586, 637
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	3 cut(s)	138, 159, 303
SstI	GAGCTC	1 cut(s)	252
StyI	CCWWGG	2 cut(s)	661, 672
TaaI	ACNGT	3 cut(s)	83, 173, 620
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	7 cut(s)	102, 123, 165, 182, 203, 252, 379
TasI	AATT	3 cut(s)	386, 586, 637
TfiI	GAWTC	1 cut(s)	720
Tru1I	TTAA	2 cut(s)	266, 585
Tru9I	TTAA	2 cut(s)	266, 585
TseFI	GTSAC	4 cut(s)	77, 83, 173, 620
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	4 cut(s)	77, 83, 173, 620
TspDTI	ATGAA	4 cut(s)	162, 209, 297, 630
TspGWI	ACGGA	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	658
XmnI	GAANNNNTTC	2 cut(s)	333, 518
XspI	CTAG	3 cut(s)	138, 159, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.