Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005798

Physical Location & Seq

Genomic Coordinates Forward (+)

1726076 .. 1730088

Gene Structure 4013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1027800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGAGATCTCAAAGCCCCAATCGTTCTTCCAAGACATCAGAGCTCGAGAGCTTCAAGGATTCAGAGCTCGGAAGCGGCCGTGCATCAATGCCCTGGCATCAGATTACTACGAAGTCGGCGCCATCGCTGCAGAGCACAACGGCCCTCCGATGGCGATCTCGTTTGGCAAGACTTGGAAAAGCTCGCACACAGTCGCCATGTCCGACGAGGATGGGTACTTGAGCCTGTTTGATACACGTCGCAAGTTCTCCGCATCTGCATCTCACCAAGAAAACGCAGATAAAACGAGGGTTTGCGATTGGGTTGCGCATCAAAACACTGTGTTCGATATCTGTTGGATTAAGGATGACACTCAAATTATGACAGCTTCTGGCGATCAGACTATCAAGGCATGGGATATTCAGGAAAAGAAATGTACTGCATTACTGATGGGGCACACAGGAAGTGTGAAATCTCTATGTCCTCATCCAACTAATCCCGAGATTATTGTCTCTGGTTCGAGAGATGGCTCCTTTGCTCTTTGGGATATGAGATGTAATTCAAACTCTACAAATATGCAGGGGGAGCTTTCTATACGCTCAGCTGCCGTGGTTACAGGGGCTCATATTTTTCCACGGGCAAAACGTGTAAGGCGCAGAAAGGCTGTTTCCATGAGCATCACATCAGTTCTTTATCTTAAGGATGAGGTCTCCATTGCTACTGCCGGAGCTGTGGACAGCATTGTCAAGTTTTGGGATACCAGAAGTTTGAAAAATGTTGTCACACAGACATGCCCTCAACCGGAGTCAACTGAGAAGGAAAGACGATTACATGGTATAACTAGCTTATCCCAAGATCTAAATGGAGTGTTTCTTTCAGCTTCATGCATGGATAACAGCATTTATTTGTATAATGTACTTCAGCTACAAAAGGGTGCTATGCAAACGTTCACTGGATGCCAGATTGAAACTTTTTTTGTTAAGTCAGTTATTAGTCCTGATGCTGCTCACATACTCAGTGGCTCTAGCGATGGAAATGCCTATATTTGGCAGGTAAACAAGCCTCAGGAAGACCCCATTATATTGAAAGGCCACGACAGGGAAGTTACTGCAGTGGATTGGTCCCAGTTTGAGGTCGGGAAGATTGCAACTTCATCAGATGATTTTACGGTTCGCATTTGGAACTCTCAGAATAGTTGCTCCCCAAGCACAAGCTCACCGTCTACCATTCGAAGGAGAGTCATGGCAATCCCAAGTGCAGAGTGTAGAAAGCTTCTGATGAGTGAATCAACAAAGCATACCTCAAAGGATTCCGGAAATCTGTGTCCGTCAGATGAAGGATTAGACAAAACTAACTCACTCAACCCGATTAGTATGCCTAACATGAGTACTCCCCCGTCTCAGAAGAAACAATCTACGTCGGATCCTGACTTTAGCAAAACCTTGGAGAAGACCCCCGAAGCTGCATTGGACAGCCCGTCTTCTGTTCTGCACCCTCCCTCCTCTCTAAAAAGGAAAACAATTCGTGATTACTTTGGAGTACCTCCCTTGAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000151 GO:0000209 GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010564 GO:0010948 GO:0015630 GO:0016567 GO:0018130 GO:0019438 GO:0019538 GO:0019941 GO:0019985 GO:0023052 GO:0030163 GO:0031461 GO:0031464 GO:0031465 GO:0031570 GO:0031572 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0071897 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080008 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901987 GO:1901988 GO:1902494 GO:1902749 GO:1902750 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

513

Amino Acids

56.58

Weight (kDa)

8.35

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	59 - 187	5.7e-11	CDC20/Fizzy WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	61 - 185	1e-09	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	62 - 181	1.6e-13	WDR3 first beta-propeller domain
WDR55	PF24796	92 - 187	6e-08	WDR55
WD40_Gbeta	PF25391	96 - 188	1.3e-12	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	97 - 183	5.6e-16	WDR5 beta-propeller domain
WD40_Prp19	PF24814	97 - 189	2.2e-13	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	102 - 176	1.4e-08	WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	103 - 177	1.1e-06	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	104 - 189	4.8e-16	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	106 - 185	3.4e-10	WDHD1 first WD40 domain
WD40	PF00400	138 - 176	2.9e-06	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	209 - 390	1.1e-06	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	211 - 347	7.8e-10	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	215 - 394	4e-07	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	217 - 396	9.8e-13	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	242 - 397	1.7e-12	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	325 - 395	1.4e-10	THOC3 beta-propeller domain
WD40_Prp19	PF24814	327 - 423	4.1e-07	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	329 - 397	6.9e-06	TEP-1 second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27640 AT3G27640
fragaria_vesca	FvH4_6g51280 FvH4_6g51280 FvH4_6g51280 FvH4_6g51280
malus_domestica	MD09G1027800.v1.1 MD17G1027700.v1.1 MD17G1028200.v1.1
prunus_persica	Prupe.3G290400_v2.0.a1 Prupe.3G291000_v2.0.a1
pyrus_communis	pycom111g02180
rosa_chinensis	RchiOBHm_Chr2g0172901
rosa_laevigata	RLG00000022140
rosa_multiflora	Rmu_co8216202.1_g000001 Rmu_sc0002979.1_g000002 Rmu_sc0013380.1_g000001 Rmu_sc0015618.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079450
rosa_rugosa	Rorug02G0563200 Rorug02G0563400
rosa_samantha	Rh2AG640100 Rh2AG640200 Rh2BG653600 Rh2BG653700 Rh2CG619200 Rh2DG667200
rosa_wichuraiana	Rw2G052840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	722
Acc16I	TGCGCA	1 cut(s)	309
Acc36I	ACCTGC	1 cut(s)	1021
AccB1I	GGYRCC	1 cut(s)	119
AccI	GTMKAC	1 cut(s)	1202
AccIII	TCCGGA	1 cut(s)	1292
AciI	CCGC	2 cut(s)	76, 252
AclI	AACGTT	1 cut(s)	926
AclWI	GGATC	2 cut(s)	1397, 1410
AcoI	YGGCCR	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	884
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	5 cut(s)	218, 418, 897, 1369, 1521
AfiI	CCNNNNNNNGG	6 cut(s)	151, 781, 1026, 1078, 1111, 1212
AflII	CTTAAG	1 cut(s)	677
AflIII	ACRYGT	2 cut(s)	236, 625
AgsI	TTSAA	6 cut(s)	56, 543, 751, 947, 1066, 1531
AhdI	GACNNNNNGTC	1 cut(s)	1456
AjiI	CACGTC	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	93
Alw21I	GWGCWC	3 cut(s)	46, 70, 138
Alw26I	GTCTC	3 cut(s)	496, 694, 1383
AlwI	GGATC	2 cut(s)	1397, 1410
AlwNI	CAGNNNCTG	1 cut(s)	371
Ama87I	CYCGRG	2 cut(s)	45, 479
Aor13HI	TCCGGA	1 cut(s)	1292
AoxI	GGCC	3 cut(s)	77, 142, 1069
ApeKI	GCWGC	4 cut(s)	128, 584, 983, 1442
AspLEI	GCGC	3 cut(s)	122, 310, 636
AspS9I	GGNCC	2 cut(s)	143, 1101
AsuHPI	GGTGA	2 cut(s)	257, 1188
AsuII	TTCGAA	1 cut(s)	1210
AvaI	CYCGRG	2 cut(s)	45, 479
AvaII	GGWCC	1 cut(s)	1101
AxyI	CCTNAGG	1 cut(s)	1044
BaeGI	GKGCMC	1 cut(s)	438
BamHI	GGATCC	1 cut(s)	1402
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	3 cut(s)	46, 70, 604
BbsI	GAAGAC	3 cut(s)	1056, 1436, 1452
Bbv12I	GWGCWC	3 cut(s)	46, 70, 138
BbvI	GCAGC	4 cut(s)	115, 571, 970, 1429
BccI	CCATC	6 cut(s)	131, 145, 206, 424, 500, 1004
BceAI	ACGGC	3 cut(s)	64, 157, 572
BcgI	CGANNNNNNTGC	6 cut(s)	287, 321, 998, 1032, 1336, 1370
BciT130I	CCWGG	1 cut(s)	95
BciVI	GTATCC	1 cut(s)	730
BcoDI	GTCTC	3 cut(s)	496, 694, 1383
BfaI	CTAG	2 cut(s)	822, 1005
BfmI	CTRYAG	2 cut(s)	129, 1089
BfoI	RGCGCY	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	677
BfuAI	ACCTGC	1 cut(s)	1021
BfuI	GTATCC	1 cut(s)	730
BglII	AGATCT	2 cut(s)	6, 835
BisI	GCNGC	5 cut(s)	77, 129, 585, 984, 1443
BlpI	GCTNAGC	1 cut(s)	580
BlsI	GCNGC	5 cut(s)	78, 130, 586, 985, 1444
BmcAI	AGTACT	1 cut(s)	1369
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	1101
BmeRI	GACNNNNNGTC	1 cut(s)	1456
BmeT110I	CYCGRG	2 cut(s)	45, 479
BmgBI	CACGTC	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	143, 1101
BmiI	GGNNCC	4 cut(s)	121, 511, 1103, 1404
BmrFI	CCNGG	1 cut(s)	95
BmrI	ACTGGG	1 cut(s)	1099
BmsI	GCATC	8 cut(s)	93, 107, 263, 269, 319, 666, 926, 970
BmuI	ACTGGG	1 cut(s)	1099
BpiI	GAAGAC	3 cut(s)	1056, 1436, 1452
Bpu1102I	GCTNAGC	1 cut(s)	580
Bpu14I	TTCGAA	1 cut(s)	1210
BpuEI	CTTGAG	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	694
BsaJI	CCNNGG	4 cut(s)	93, 588, 614, 1422
BsaWI	WCCGGW	2 cut(s)	781, 1292
BsaXI	ACNNNNNCTCC	2 cut(s)	1463, 1493
Bsc4I	CCNNNNNNNGG	6 cut(s)	151, 781, 1026, 1078, 1111, 1212
Bse1I	ACTGG	2 cut(s)	937, 1105
Bse21I	CCTNAGG	1 cut(s)	1044
Bse3DI	GCAATG	1 cut(s)	693
Bse8I	GATNNNNATC	1 cut(s)	155
BseAI	TCCGGA	1 cut(s)	1292
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	4 cut(s)	93, 588, 614, 1422
BseGI	GGATG	5 cut(s)	217, 352, 466, 688, 941
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	6 cut(s)	151, 781, 1026, 1078, 1111, 1212
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	6 cut(s)	594, 783, 1009, 1058, 1181, 1394
BseNI	ACTGG	2 cut(s)	937, 1105
BseRI	GAGGAG	1 cut(s)	1471
BseSI	GKGCMC	1 cut(s)	438
BseX3I	CGGCCG	1 cut(s)	77
BseXI	GCAGC	4 cut(s)	115, 571, 970, 1429
BsgI	GTGCAG	2 cut(s)	1257, 1454
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	79, 144, 1071
BshNI	GGYRCC	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	80
BsiHKAI	GWGCWC	3 cut(s)	46, 70, 138
BsiHKCI	CYCGRG	2 cut(s)	45, 479
BsiSI	CCGG	3 cut(s)	705, 782, 1293
BslFI	GGGAC	1 cut(s)	1087
BslI	CCNNNNNNNGG	6 cut(s)	151, 781, 1026, 1078, 1111, 1212
BsmAI	GTCTC	3 cut(s)	496, 694, 1383
BsmBI	CGTCTC	1 cut(s)	1383
BsmFI	GGGAC	1 cut(s)	1087
BsnI	GGCC	3 cut(s)	79, 144, 1071
Bso31I	GGTCTC	1 cut(s)	694
BsoBI	CYCGRG	2 cut(s)	45, 479
Bsp119I	TTCGAA	1 cut(s)	1210
Bsp1286I	GDGCHC	5 cut(s)	46, 70, 138, 438, 604
Bsp13I	TCCGGA	1 cut(s)	1292
Bsp143I	GATC	5 cut(s)	6, 156, 376, 835, 1402
Bsp1720I	GCTNAGC	1 cut(s)	580
BspACI	CCGC	2 cut(s)	76, 252
BspANI	GGCC	3 cut(s)	79, 144, 1071
BspCNI	CTCAG	6 cut(s)	593, 784, 1008, 1057, 1180, 1393
BspEI	TCCGGA	1 cut(s)	1292
BspLI	GGNNCC	4 cut(s)	121, 511, 1103, 1404
BspMAI	CTGCAG	2 cut(s)	133, 1093
BspMI	ACCTGC	1 cut(s)	1021
BspPI	GGATC	2 cut(s)	1397, 1410
BspT104I	TTCGAA	1 cut(s)	1210
BspT107I	GGYRCC	1 cut(s)	119
BspTI	CTTAAG	1 cut(s)	677
BspTNI	GGTCTC	1 cut(s)	694
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	2 cut(s)	937, 1105
BssECI	CCNNGG	4 cut(s)	93, 588, 614, 1422
BssMI	GATC	5 cut(s)	6, 156, 376, 835, 1402
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	1422
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	4 cut(s)	193, 322, 1150, 1200
BstACI	GRCGYC	1 cut(s)	120
BstAFI	CTTAAG	1 cut(s)	677
BstBI	TTCGAA	1 cut(s)	1210
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	6 cut(s)	580, 792, 995, 1044, 1167, 1380
BstDSI	CCRYGG	2 cut(s)	588, 614
BstF5I	GGATG	5 cut(s)	217, 352, 466, 688, 941
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	3 cut(s)	122, 310, 636
BstKTI	GATC	5 cut(s)	9, 159, 379, 838, 1405
BstMAI	GTCTC	3 cut(s)	496, 694, 1383
BstMBI	GATC	5 cut(s)	6, 156, 376, 835, 1402
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 565, 1185
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	774
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	2 cut(s)	129, 1089
BstSLI	GKGCMC	1 cut(s)	438
BstV1I	GCAGC	4 cut(s)	115, 571, 970, 1429
BstV2I	GAAGAC	3 cut(s)	1056, 1436, 1452
BstX2I	RGATCY	3 cut(s)	6, 835, 1402
BstYI	RGATCY	3 cut(s)	6, 835, 1402
BstZI	CGGCCG	1 cut(s)	77
Bsu36I	CCTNAGG	1 cut(s)	1044
BsuI	GTATCC	1 cut(s)	730
BsuRI	GGCC	3 cut(s)	79, 144, 1071
BtgI	CCRYGG	2 cut(s)	588, 614
BtgZI	GCGATG	2 cut(s)	109, 1023
BtrI	CACGTC	1 cut(s)	239
BtsCI	GGATG	5 cut(s)	217, 352, 466, 688, 941
BtsI	GCAGTG	1 cut(s)	1098
BtsIMutI	CAGTG	4 cut(s)	318, 930, 1003, 1098
BveI	ACCTGC	1 cut(s)	1021
Cac8I	GCNNGC	1 cut(s)	185
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	3 cut(s)	122, 310, 636
Cfr13I	GGNCC	2 cut(s)	143, 1101
Csp6I	GTAC	5 cut(s)	217, 417, 896, 1368, 1520
CviAII	CATG	9 cut(s)	199, 393, 652, 771, 812, 864, 868, 1222, 1363
CviQI	GTAC	5 cut(s)	217, 417, 896, 1368, 1520
DdeI	CTNAG	6 cut(s)	580, 792, 995, 1044, 1167, 1380
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	5 cut(s)	8, 158, 378, 837, 1404
DpnII	GATC	5 cut(s)	6, 156, 376, 835, 1402
DrdI	GACNNNNNNGTC	1 cut(s)	722
DriI	GACNNNNNGTC	1 cut(s)	1456
DseDI	GACNNNNNNGTC	1 cut(s)	722
EaeI	YGGCCR	1 cut(s)	77
EagI	CGGCCG	1 cut(s)	77
Eam1105I	GACNNNNNGTC	1 cut(s)	1456
Ecl136II	GAGCTC	2 cut(s)	44, 68
EclXI	CGGCCG	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	1422
Eco24I	GRGCYC	3 cut(s)	46, 70, 604
Eco31I	GGTCTC	1 cut(s)	694
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	1101
Eco52I	CGGCCG	1 cut(s)	77
Eco53kI	GAGCTC	2 cut(s)	44, 68
Eco57I	CTGAAG	1 cut(s)	884
Eco81I	CCTNAGG	1 cut(s)	1044
Eco88I	CYCGRG	2 cut(s)	45, 479
EcoICRI	GAGCTC	2 cut(s)	44, 68
EcoRII	CCWGG	1 cut(s)	93
EcoRV	GATATC	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	1422
EcoT22I	ATGCAT	1 cut(s)	869
EcoT38I	GRGCYC	3 cut(s)	46, 70, 604
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	1422
Esp3I	CGTCTC	1 cut(s)	1383
FaeI	CATG	9 cut(s)	202, 396, 655, 774, 815, 867, 871, 1225, 1366
FaqI	GGGAC	1 cut(s)	1087
FatI	CATG	9 cut(s)	198, 392, 651, 770, 811, 863, 867, 1221, 1362
FblI	GTMKAC	1 cut(s)	1202
Fnu4HI	GCNGC	5 cut(s)	77, 129, 585, 984, 1443
FokI	GGATG	5 cut(s)	224, 359, 453, 695, 948
FriOI	GRGCYC	3 cut(s)	46, 70, 604
Fsp4HI	GCNGC	5 cut(s)	77, 129, 585, 984, 1443
FspBI	CTAG	2 cut(s)	822, 1005
FspI	TGCGCA	1 cut(s)	309
GlaI	GCGC	3 cut(s)	121, 309, 635
GluI	GCNGC	5 cut(s)	77, 129, 585, 984, 1443
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	3 cut(s)	79, 144, 1071
HapII	CCGG	3 cut(s)	705, 782, 1293
HhaI	GCGC	3 cut(s)	122, 310, 636
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	9 cut(s)	202, 396, 655, 774, 815, 867, 871, 1225, 1366
Hin6I	GCGC	3 cut(s)	120, 308, 634
HinP1I	GCGC	3 cut(s)	120, 308, 634
HincII	GTYRAC	1 cut(s)	789
HindII	GTYRAC	1 cut(s)	789
HindIII	AAGCTT	1 cut(s)	1250
HinfI	GANTC	5 cut(s)	60, 785, 1218, 1265, 1289
HpaII	CCGG	3 cut(s)	705, 782, 1293
HphI	GGTGA	2 cut(s)	257, 1188
Hpy166II	GTNNAC	5 cut(s)	715, 789, 930, 1036, 1203
Hpy8I	GTNNAC	5 cut(s)	715, 789, 930, 1036, 1203
Hpy99I	CGWCG	3 cut(s)	209, 243, 1402
HpyAV	CCTTC	3 cut(s)	790, 1206, 1310
HpyCH4III	ACNGT	4 cut(s)	193, 322, 1150, 1200
HpyCH4IV	ACGT	4 cut(s)	238, 625, 926, 1397
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 565, 1185
HpyF3I	CTNAG	6 cut(s)	580, 792, 995, 1044, 1167, 1380
HpySE526I	ACGT	4 cut(s)	238, 625, 926, 1397
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	9 cut(s)	202, 396, 655, 774, 815, 867, 871, 1225, 1366
HspAI	GCGC	3 cut(s)	120, 308, 634
KasI	GGCGCC	1 cut(s)	119
Kpn2I	TCCGGA	1 cut(s)	1292
Kzo9I	GATC	5 cut(s)	6, 156, 376, 835, 1402
LmnI	GCTCC	4 cut(s)	515, 565, 707, 1184
Lsp1109I	GCAGC	4 cut(s)	115, 571, 970, 1429
LweI	GCATC	8 cut(s)	93, 107, 263, 269, 319, 666, 926, 970
MaeI	CTAG	2 cut(s)	822, 1005
MaeII	ACGT	4 cut(s)	238, 625, 926, 1397
MaeIII	GTNAC	3 cut(s)	592, 760, 1084
MalI	GATC	5 cut(s)	8, 158, 378, 837, 1404
MboI	GATC	5 cut(s)	6, 156, 376, 835, 1402
MboII	GAAGA	6 cut(s)	19, 1061, 1132, 1396, 1441, 1452
MflI	RGATCY	3 cut(s)	6, 835, 1402
MhlI	GDGCHC	5 cut(s)	46, 70, 138, 438, 604
MluCI	AATT	3 cut(s)	357, 538, 1500
Mly113I	GGCGCC	1 cut(s)	120
MlyI	GAGTC	2 cut(s)	794, 1227
MmeI	TCCRAC	4 cut(s)	228, 317, 494, 1380
Mph1103I	ATGCAT	1 cut(s)	869
MroI	TCCGGA	1 cut(s)	1292
MseI	TTAA	3 cut(s)	342, 678, 960
MslI	CAYNNNNRTG	1 cut(s)	769
MspA1I	CMGCKG	1 cut(s)	584
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	3 cut(s)	705, 782, 1293
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	128, 565, 1185
NarI	GGCGCC	1 cut(s)	120
NdeII	GATC	5 cut(s)	6, 156, 376, 835, 1402
NlaIII	CATG	9 cut(s)	202, 396, 655, 774, 815, 867, 871, 1225, 1366
NlaIV	GGNNCC	4 cut(s)	121, 511, 1103, 1404
NmuCI	GTSAC	1 cut(s)	760
NsbI	TGCGCA	1 cut(s)	309
NsiI	ATGCAT	1 cut(s)	869
NspI	RCATGY	1 cut(s)	774
NspV	TTCGAA	1 cut(s)	1210
PaeR7I	CTCGAG	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	2 cut(s)	201, 622
PfeI	GAWTC	3 cut(s)	60, 1265, 1289
PkrI	GCNGC	5 cut(s)	78, 130, 586, 985, 1444
PleI	GAGTC	2 cut(s)	793, 1226
PluTI	GGCGCC	1 cut(s)	123
PpsI	GAGTC	2 cut(s)	793, 1226
Psp124BI	GAGCTC	2 cut(s)	46, 70
Psp1406I	AACGTT	1 cut(s)	926
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	4 cut(s)	121, 511, 1103, 1404
PspPI	GGNCC	2 cut(s)	143, 1101
PstI	CTGCAG	2 cut(s)	133, 1093
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	3 cut(s)	6, 835, 1402
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	5 cut(s)	218, 418, 897, 1369, 1521
RsaNI	GTAC	5 cut(s)	217, 417, 896, 1368, 1520
RseI	CAYNNNNRTG	1 cut(s)	769
SacI	GAGCTC	2 cut(s)	46, 70
SaqAI	TTAA	3 cut(s)	342, 678, 960
SatI	GCNGC	5 cut(s)	77, 129, 585, 984, 1443
Sau3AI	GATC	5 cut(s)	6, 156, 376, 835, 1402
Sau96I	GGNCC	2 cut(s)	143, 1101
ScaI	AGTACT	1 cut(s)	1369
SchI	GAGTC	2 cut(s)	794, 1227
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	5 cut(s)	46, 70, 138, 438, 604
SfaNI	GCATC	8 cut(s)	93, 107, 263, 269, 319, 666, 926, 970
SfcI	CTRYAG	2 cut(s)	129, 1089
SfoI	GGCGCC	1 cut(s)	121
Sfr274I	CTCGAG	1 cut(s)	45
SfuI	TTCGAA	1 cut(s)	1210
SinI	GGWCC	1 cut(s)	1101
SlaI	CTCGAG	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	769
SmlI	CTYRAG	3 cut(s)	45, 220, 677
SmoI	CTYRAG	3 cut(s)	45, 220, 677
Sse9I	AATT	3 cut(s)	357, 538, 1500
SsiI	CCGC	2 cut(s)	76, 252
SspDI	GGCGCC	1 cut(s)	119
SspMI	CTAG	2 cut(s)	822, 1005
SstI	GAGCTC	2 cut(s)	46, 70
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	1422
TaaI	ACNGT	4 cut(s)	193, 322, 1150, 1200
TaiI	ACGT	4 cut(s)	241, 628, 929, 1400
TaqI	TCGA	4 cut(s)	46, 327, 500, 1210
TasI	AATT	3 cut(s)	357, 538, 1500
TatI	WGTACW	3 cut(s)	416, 895, 1367
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	3 cut(s)	60, 1265, 1289
Tru1I	TTAA	3 cut(s)	342, 678, 960
Tru9I	TTAA	3 cut(s)	342, 678, 960
TscAI	CASTG	4 cut(s)	325, 937, 1003, 1098
TseFI	GTSAC	1 cut(s)	760
TseI	GCWGC	4 cut(s)	128, 584, 983, 1442
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	3 cut(s)	852, 1122, 1329
TspGWI	ACGGA	1 cut(s)	1296
TspRI	CASTG	4 cut(s)	325, 937, 1003, 1098
Vha464I	CTTAAG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	1101
XceI	RCATGY	1 cut(s)	774
XcmI	CCANNNNNNNNNTGG	1 cut(s)	839
XhoI	CTCGAG	1 cut(s)	45
XmiI	GTMKAC	1 cut(s)	1202
XspI	CTAG	2 cut(s)	822, 1005
ZrmI	AGTACT	1 cut(s)	1369
Zsp2I	ATGCAT	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.