Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005798

Physical Location & Seq

Genomic Coordinates Forward (+)

68837763 .. 68839360

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0563200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCTGAAGATTATTGCAAGCTTCGTACTAGGGTTTCTTTTTGTGAGGCATGCCTTAGGAGACTTCACTGCACATGCTGATCATAAAGGTAAAGAAGGGTTATTAATGACTGGAAAACATTCTGTATTGCCTGATGAAAAGGAACTAATTGATGAAATCTCAAAAATCGCTGGGTCAAGGATTATAGGGATCGGAGGAAGGAAGATGGCGGCACAGAAAGTAGTGCTGAGAAATGGAGAGCTTACTCCTACTACTACTTCATCAAAGAATTCAGGAAAGGACAGTAATAAGGCTTCAAAGTACAACTTCAACGGAAGACCACAAACCAAATTGAACCAAAAGGGTGGAATCAAAATATTGAAAACTGCTGCCAGCAGTACGAGCAGCAACATTGGAATTCCTAGAGATGAGCCAACAAAACACTCTCAAGTAGATGAAGAAACTAGACGGCTTCTTGAAGCAGAAAGAGAGATAGTAAACCTGATGCATAAAGATTATAAGGGATCCTCCGGAGGGAGTATGGGTCGCCGCAAGCCACCCATACACAACCAAGAGCCACAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000151 GO:0000209 GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010564 GO:0010948 GO:0015630 GO:0016567 GO:0018130 GO:0019438 GO:0019538 GO:0019941 GO:0019985 GO:0023052 GO:0030163 GO:0031461 GO:0031464 GO:0031465 GO:0031570 GO:0031572 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0071897 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080008 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901987 GO:1901988 GO:1902494 GO:1902749 GO:1902750 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

188

Amino Acids

20.59

Weight (kDa)

9.91

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27640 AT3G27640
fragaria_vesca	FvH4_6g51280 FvH4_6g51280 FvH4_6g51280 FvH4_6g51280
malus_domestica	MD09G1027800.v1.1 MD17G1027700.v1.1 MD17G1028200.v1.1
prunus_persica	Prupe.3G290400_v2.0.a1 Prupe.3G291000_v2.0.a1
pyrus_communis	pycom111g02180
rosa_chinensis	RchiOBHm_Chr2g0172901
rosa_laevigata	RLG00000022140
rosa_multiflora	Rmu_co8216202.1_g000001 Rmu_sc0002979.1_g000002 Rmu_sc0013380.1_g000001 Rmu_sc0015618.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079450
rosa_rugosa	Rorug02G0563200 Rorug02G0563400
rosa_samantha	Rh2AG640100 Rh2AG640200 Rh2BG653600 Rh2BG653700 Rh2CG619200 Rh2DG667200
rosa_wichuraiana	Rw2G052840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
AccIII	TCCGGA	1 cut(s)	509
AciI	CCGC	2 cut(s)	209, 529
AclWI	GGATC	3 cut(s)	197, 498, 511
AcsI	RAATTY	2 cut(s)	268, 396
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	3 cut(s)	27, 302, 379
AfiI	CCNNNNNNNGG	1 cut(s)	513
AgsI	TTSAA	5 cut(s)	297, 310, 334, 361, 458
AluBI	AGCT	2 cut(s)	21, 241
AluI	AGCT	2 cut(s)	21, 241
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	3 cut(s)	197, 498, 511
Aor13HI	TCCGGA	1 cut(s)	509
ApeKI	GCWGC	2 cut(s)	368, 384
ApoI	RAATTY	2 cut(s)	268, 396
AseI	ATTAAT	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	118
AxyI	CCTNAGG	1 cut(s)	55
BamHI	GGATCC	1 cut(s)	503
BarI	GAAGNNNNNNTAC	2 cut(s)	277, 309
BbsI	GAAGAC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	355, 396
BccI	CCATC	1 cut(s)	199
BceAI	ACGGC	1 cut(s)	464
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	3 cut(s)	29, 402, 444
BisI	GCNGC	4 cut(s)	210, 369, 385, 529
BlsI	GCNGC	4 cut(s)	211, 370, 386, 530
BmiI	GGNNCC	1 cut(s)	505
BmsI	GCATC	1 cut(s)	474
BpiI	GAAGAC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	411
BsaWI	WCCGGW	1 cut(s)	509
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	513
Bse1I	ACTGG	1 cut(s)	115
Bse21I	CCTNAGG	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	509
BseLI	CCNNNNNNNGG	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	355, 396
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	510
BslI	CCNNNNNNNGG	1 cut(s)	513
BsmAI	GTCTC	1 cut(s)	54
Bsp13I	TCCGGA	1 cut(s)	509
Bsp143I	GATC	3 cut(s)	79, 189, 503
BspACI	CCGC	2 cut(s)	209, 529
BspCNI	CTCAG	1 cut(s)	219
BspEI	TCCGGA	1 cut(s)	509
BspLI	GGNNCC	1 cut(s)	505
BspPI	GGATC	3 cut(s)	197, 498, 511
BsrI	ACTGG	1 cut(s)	115
BssMI	GATC	3 cut(s)	79, 189, 503
Bst4CI	ACNGT	1 cut(s)	284
BstC8I	GCNNGC	4 cut(s)	19, 51, 373, 533
BstDEI	CTNAG	2 cut(s)	55, 227
BstKTI	GATC	3 cut(s)	82, 192, 506
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	3 cut(s)	79, 189, 503
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstNSI	RCATGY	2 cut(s)	53, 77
BstV1I	GCAGC	2 cut(s)	355, 396
BstV2I	GAAGAC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	503
BstXI	CCANNNNNNTGG	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	503
Bsu36I	CCTNAGG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	4 cut(s)	19, 51, 373, 533
Csp6I	GTAC	3 cut(s)	26, 301, 378
CviAII	CATG	2 cut(s)	50, 74
CviJI	RGCY	7 cut(s)	21, 241, 293, 412, 451, 535, 556
CviKI_1	RGCY	7 cut(s)	21, 241, 293, 412, 451, 535, 556
CviQI	GTAC	3 cut(s)	26, 301, 378
DdeI	CTNAG	2 cut(s)	55, 227
DpnI	GATC	3 cut(s)	81, 191, 505
DpnII	GATC	3 cut(s)	79, 189, 503
Eco57I	CTGAAG	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	55
EcoRI	GAATTC	2 cut(s)	268, 396
EcoT22I	ATGCAT	1 cut(s)	489
FaeI	CATG	2 cut(s)	53, 77
FaiI	YATR	8 cut(s)	51, 75, 84, 185, 489, 498, 521, 542
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	2 cut(s)	49, 73
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	4 cut(s)	210, 369, 385, 529
Fsp4HI	GCNGC	4 cut(s)	210, 369, 385, 529
FspBI	CTAG	3 cut(s)	29, 402, 444
GluI	GCNGC	4 cut(s)	210, 369, 385, 529
GsaI	CCCAGC	1 cut(s)	174
HapII	CCGG	1 cut(s)	510
Hin1II	CATG	2 cut(s)	53, 77
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	1 cut(s)	348
HpaII	CCGG	1 cut(s)	510
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	3 cut(s)	273, 455, 510
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	2 cut(s)	89, 192
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	17, 71, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
HpyF3I	CTNAG	2 cut(s)	55, 227
Hsp92II	CATG	2 cut(s)	53, 77
Kpn2I	TCCGGA	1 cut(s)	509
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	79, 189, 503
LpnPI	CCDG	7 cut(s)	96, 144, 156, 258, 385, 494, 523
Lsp1109I	GCAGC	2 cut(s)	355, 396
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	3 cut(s)	29, 402, 444
MalI	GATC	3 cut(s)	81, 191, 505
MboI	GATC	3 cut(s)	79, 189, 503
MboII	GAAGA	4 cut(s)	19, 214, 327, 449
MflI	RGATCY	1 cut(s)	503
MluCI	AATT	4 cut(s)	147, 268, 329, 396
MnlI	CCTC	4 cut(s)	39, 188, 506, 517
Mph1103I	ATGCAT	1 cut(s)	489
MroI	TCCGGA	1 cut(s)	509
MroXI	GAANNNNTTC	1 cut(s)	118
MseI	TTAA	1 cut(s)	104
MspI	CCGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	1 cut(s)	381
NdeII	GATC	3 cut(s)	79, 189, 503
NlaIII	CATG	2 cut(s)	53, 77
NlaIV	GGNNCC	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	489
NspI	RCATGY	2 cut(s)	53, 77
PaeI	GCATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	348
PkrI	GCNGC	4 cut(s)	211, 370, 386, 530
PshBI	ATTAAT	1 cut(s)	104
PsiI	TTATAA	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	503
RsaI	GTAC	3 cut(s)	27, 302, 379
RsaNI	GTAC	3 cut(s)	26, 301, 378
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	4 cut(s)	210, 369, 385, 529
Sau3AI	GATC	3 cut(s)	79, 189, 503
SetI	ASST	4 cut(s)	23, 91, 243, 483
SfaNI	GCATC	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	4 cut(s)	147, 268, 329, 396
SsiI	CCGC	2 cut(s)	209, 529
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	3 cut(s)	29, 402, 444
TaaI	ACNGT	1 cut(s)	284
TasI	AATT	4 cut(s)	147, 268, 329, 396
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	2 cut(s)	212, 531
TfiI	GAWTC	1 cut(s)	348
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	2 cut(s)	368, 384
TspDTI	ATGAA	4 cut(s)	150, 168, 249, 450
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	104
XapI	RAATTY	2 cut(s)	268, 396
XceI	RCATGY	2 cut(s)	53, 77
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	3 cut(s)	29, 402, 444
Zsp2I	ATGCAT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.