Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015618.1

Orthogroup ID

OG0005798

Physical Location & Seq

Genomic Coordinates Forward (+)

1854 .. 3728

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015618.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggagacctcaaatccccggtcgttcttccaaggcatcagatccagagagctacacggatcccgagttccgaagcggtcctacatcgattgcctggcttcggatttctccgaaattggagccattgcagccgagcacaacggacctccgatggccatttcgttcggcaagaccagtagaaactctcacatcgtcgccatgtctgatgaggatgggtacctgagcttgttcgatacgcgtcgcaagttctcggcatctgcatctcaccgggaaaatgcagatagaaccaaggtttacgattgggttgtgcatcaaaatgccgtgtttgacatctgttggataaaggatgatactcagattgtgacagcttctggtgatcaaactgtcaaggtatgggatattcaggaaaagaaatgtactgcagttctggtggggcacactggaagtgtgaagtctttgagtcctcatccgactaatcctgagattatcgtctccggttcaagagatggctcctttgctctctgggatatgagatgtaattcaacatccaaaaatacgcttgcggagctctgcatatgcccaactgctgtggttaatggggctcatctaaccccacgagcaaagcgatcacggcgtggaaaggctgctccaaggagcatcacatcagttcttaatcttaaagatgaggtttccattgctactgctggagctgtggacagtgttgtcaagttctgggacactagaagtttgaaaagtatagtcacacagacatgtcctcatatggagtcaaatgagaaggttagtctgaagtatatattgtctcattcacattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000151 GO:0000209 GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010564 GO:0010948 GO:0015630 GO:0016567 GO:0018130 GO:0019438 GO:0019538 GO:0019941 GO:0019985 GO:0023052 GO:0030163 GO:0031461 GO:0031464 GO:0031465 GO:0031570 GO:0031572 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0071897 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080008 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901987 GO:1901988 GO:1902494 GO:1902749 GO:1902750 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

277

Amino Acids

30.53

Weight (kDa)

8.95

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27640 AT3G27640
fragaria_vesca	FvH4_6g51280 FvH4_6g51280 FvH4_6g51280 FvH4_6g51280
malus_domestica	MD09G1027800.v1.1 MD17G1027700.v1.1 MD17G1028200.v1.1
prunus_persica	Prupe.3G290400_v2.0.a1 Prupe.3G291000_v2.0.a1
pyrus_communis	pycom111g02180
rosa_chinensis	RchiOBHm_Chr2g0172901
rosa_laevigata	RLG00000022140
rosa_multiflora	Rmu_co8216202.1_g000001 Rmu_sc0002979.1_g000002 Rmu_sc0013380.1_g000001 Rmu_sc0015618.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079450
rosa_rugosa	Rorug02G0563200 Rorug02G0563400
rosa_samantha	Rh2AG640100 Rh2AG640200 Rh2BG653600 Rh2BG653700 Rh2CG619200 Rh2DG667200
rosa_wichuraiana	Rw2G052840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	722
Acc65I	GGTACC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	216
AccII	CGCG	1 cut(s)	238
AciI	CCGC	2 cut(s)	76, 563
AclWI	GGATC	3 cut(s)	36, 54, 67
AcoI	YGGCCR	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	827
AdeI	CACNNNGTG	1 cut(s)	635
AfaI	GTAC	2 cut(s)	218, 418
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	2 cut(s)	236, 770
AgsI	TTSAA	3 cut(s)	501, 543, 751
AjnI	CCWGG	1 cut(s)	93
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	5 cut(s)	52, 225, 368, 568, 710
AluI	AGCT	5 cut(s)	52, 225, 368, 568, 710
Alw21I	GWGCWC	2 cut(s)	138, 570
Alw26I	GTCTC	2 cut(s)	496, 825
AlwI	GGATC	3 cut(s)	36, 54, 67
AlwNI	CAGNNNCTG	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	128, 644
ArsI	GACNNNNNNTTYG	1 cut(s)	37
Asp718I	GGTACC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	78, 143
AsuC2I	CCSGG	2 cut(s)	19, 269
AsuHPI	GGTGA	2 cut(s)	257, 386
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	78, 143
BaeGI	GKGCMC	1 cut(s)	438
BalI	TGGCCA	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	216
BanII	GRGCYC	2 cut(s)	570, 604
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BauI	CACGAG	1 cut(s)	615
Bbv12I	GWGCWC	2 cut(s)	138, 570
BbvI	GCAGC	2 cut(s)	140, 631
BccI	CCATC	3 cut(s)	145, 206, 500
BceAI	ACGGC	2 cut(s)	305, 647
BciT130I	CCWGG	1 cut(s)	95
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	2 cut(s)	19, 269
BcoDI	GTCTC	2 cut(s)	496, 825
BfaI	CTAG	1 cut(s)	741
BfmI	CTRYAG	1 cut(s)	420
BisI	GCNGC	2 cut(s)	129, 645
BlsI	GCNGC	2 cut(s)	130, 646
Bme1390I	CCNGG	3 cut(s)	19, 95, 269
Bme18I	GGWCC	2 cut(s)	78, 143
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	78, 143
BmiI	GGNNCC	4 cut(s)	61, 121, 218, 511
BmrFI	CCNGG	3 cut(s)	19, 95, 269
BmsI	GCATC	5 cut(s)	45, 263, 269, 319, 666
BpmI	CTGGAG	1 cut(s)	726
Bpu10I	CCTNAGC	1 cut(s)	221
BpuMI	CCSGG	2 cut(s)	19, 269
Bsa29I	ATCGAT	1 cut(s)	87
BsaJI	CCNNGG	4 cut(s)	17, 31, 288, 650
BsaWI	WCCGGW	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	174, 445
Bse3DI	GCAATG	2 cut(s)	123, 693
BseBI	CCWGG	1 cut(s)	95
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	4 cut(s)	17, 31, 288, 650
BseGI	GGATG	4 cut(s)	217, 352, 466, 545
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	2 cut(s)	123, 693
BseMII	CTCAG	3 cut(s)	212, 368, 471
BseNI	ACTGG	2 cut(s)	174, 445
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	2 cut(s)	140, 631
Bsh1236I	CGCG	1 cut(s)	238
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	216
BshVI	ATCGAT	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	138, 570
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	3 cut(s)	19, 268, 495
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	2 cut(s)	496, 825
BsmBI	CGTCTC	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	749
BsnI	GGCC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	63
Bsp1286I	GDGCHC	4 cut(s)	138, 438, 570, 604
Bsp143I	GATC	4 cut(s)	41, 59, 376, 626
BspACI	CCGC	2 cut(s)	76, 563
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	3 cut(s)	213, 367, 472
BspDI	ATCGAT	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	4 cut(s)	61, 121, 218, 511
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	3 cut(s)	36, 54, 67
BspT107I	GGYRCC	1 cut(s)	216
BsrDI	GCAATG	2 cut(s)	123, 693
BsrI	ACTGG	2 cut(s)	174, 445
BssECI	CCNNGG	4 cut(s)	17, 31, 288, 650
BssMI	GATC	4 cut(s)	41, 59, 376, 626
BssSI	CACGAG	1 cut(s)	615
BssT1I	CCWWGG	3 cut(s)	31, 288, 650
Bst2BI	CACGAG	1 cut(s)	615
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	385, 719
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	3 cut(s)	221, 354, 480
BstF5I	GGATG	4 cut(s)	217, 352, 466, 545
BstFNI	CGCG	1 cut(s)	238
BstKTI	GATC	4 cut(s)	44, 62, 379, 629
BstMAI	GTCTC	2 cut(s)	496, 825
BstMBI	GATC	4 cut(s)	41, 59, 376, 626
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 565, 631
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	774
BstSCI	CCNGG	3 cut(s)	17, 93, 267
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	438
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	140, 631
BstX2I	RGATCY	2 cut(s)	41, 59
BstYI	RGATCY	2 cut(s)	41, 59
Bsu15I	ATCGAT	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	155
BsuTUI	ATCGAT	1 cut(s)	87
BtsCI	GGATG	4 cut(s)	217, 352, 466, 545
BtsIMutI	CAGTG	2 cut(s)	438, 724
Cac8I	GCNNGC	1 cut(s)	561
CaiI	CAGNNNCTG	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	78, 143
ClaI	ATCGAT	1 cut(s)	87
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	217, 417
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviAII	CATG	2 cut(s)	199, 771
CviQI	GTAC	2 cut(s)	217, 417
DdeI	CTNAG	3 cut(s)	221, 354, 480
DpnI	GATC	4 cut(s)	43, 61, 378, 628
DpnII	GATC	4 cut(s)	41, 59, 376, 626
DraIII	CACNNNGTG	1 cut(s)	635
DrdI	GACNNNNNNGTC	1 cut(s)	722
DseDI	GACNNNNNNGTC	1 cut(s)	722
EaeI	YGGCCR	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	568
Eco130I	CCWWGG	3 cut(s)	31, 288, 650
Eco24I	GRGCYC	2 cut(s)	570, 604
Eco47I	GGWCC	2 cut(s)	78, 143
Eco53kI	GAGCTC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	827
Eco88I	CYCGRG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	3 cut(s)	31, 288, 650
EcoT38I	GRGCYC	2 cut(s)	570, 604
ErhI	CCWWGG	3 cut(s)	31, 288, 650
Esp3I	CGTCTC	1 cut(s)	496
FaeI	CATG	2 cut(s)	202, 774
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	2 cut(s)	198, 770
FauNDI	CATATG	2 cut(s)	575, 780
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	2 cut(s)	129, 645
FokI	GGATG	4 cut(s)	224, 359, 453, 532
FriOI	GRGCYC	2 cut(s)	570, 604
Fsp4HI	GCNGC	2 cut(s)	129, 645
FspBI	CTAG	1 cut(s)	741
GluI	GCNGC	2 cut(s)	129, 645
GsuI	CTGGAG	1 cut(s)	726
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	3 cut(s)	19, 268, 495
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	202, 774
HinfI	GANTC	2 cut(s)	460, 785
HpaII	CCGG	3 cut(s)	19, 268, 495
HphI	GGTGA	2 cut(s)	257, 386
Hpy166II	GTNNAC	2 cut(s)	295, 715
Hpy188I	TCNGA	9 cut(s)	41, 72, 103, 112, 150, 205, 357, 471, 807
Hpy188III	TCNNGA	5 cut(s)	45, 63, 404, 479, 501
Hpy8I	GTNNAC	2 cut(s)	295, 715
Hpy99I	CGWCG	2 cut(s)	197, 243
HpyAV	CCTTC	1 cut(s)	790
HpyCH4III	ACNGT	2 cut(s)	385, 719
HpyCH4V	TGCA	6 cut(s)	128, 260, 278, 310, 422, 573
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 565, 631
HpyF3I	CTNAG	3 cut(s)	221, 354, 480
Hsp92II	CATG	2 cut(s)	202, 774
KpnI	GGTACC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	4 cut(s)	41, 59, 376, 626
LmnI	GCTCC	6 cut(s)	119, 515, 565, 652, 654, 707
Lsp1109I	GCAGC	2 cut(s)	140, 631
LweI	GCATC	5 cut(s)	45, 263, 269, 319, 666
MaeI	CTAG	1 cut(s)	741
MaeIII	GTNAC	2 cut(s)	361, 760
MalI	GATC	4 cut(s)	43, 61, 378, 628
MboI	GATC	4 cut(s)	41, 59, 376, 626
MboII	GAAGA	1 cut(s)	19
MflI	RGATCY	2 cut(s)	41, 59
MhlI	GDGCHC	4 cut(s)	138, 438, 570, 604
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	2 cut(s)	114, 538
MluI	ACGCGT	1 cut(s)	236
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	2 cut(s)	469, 794
MmeI	TCCRAC	2 cut(s)	317, 494
MnlI	CCTC	6 cut(s)	19, 156, 202, 474, 679, 786
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	3 cut(s)	594, 672, 678
MslI	CAYNNNNRTG	2 cut(s)	315, 769
Msp20I	TGGCCA	1 cut(s)	155
MspI	CCGG	3 cut(s)	19, 268, 495
MspR9I	CCNGG	3 cut(s)	19, 95, 269
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	128, 565, 631
NciI	CCSGG	2 cut(s)	19, 269
NdeI	CATATG	2 cut(s)	575, 780
NdeII	GATC	4 cut(s)	41, 59, 376, 626
NlaIII	CATG	2 cut(s)	202, 774
NlaIV	GGNNCC	4 cut(s)	61, 121, 218, 511
NmeAIII	GCCGAG	2 cut(s)	157, 230
NmuCI	GTSAC	2 cut(s)	361, 760
NspI	RCATGY	1 cut(s)	774
PciI	ACATGT	1 cut(s)	770
PcsI	WCGNNNNNNNCGW	1 cut(s)	622
PkrI	GCNGC	2 cut(s)	130, 646
PleI	GAGTC	2 cut(s)	468, 793
PpsI	GAGTC	2 cut(s)	468, 793
PscI	ACATGT	1 cut(s)	770
Psp124BI	GAGCTC	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	4 cut(s)	61, 121, 218, 511
PspPI	GGNCC	2 cut(s)	78, 143
PstI	CTGCAG	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	2 cut(s)	41, 59
RsaI	GTAC	2 cut(s)	218, 418
RsaNI	GTAC	2 cut(s)	217, 417
RseI	CAYNNNNRTG	2 cut(s)	315, 769
SacI	GAGCTC	1 cut(s)	570
SaqAI	TTAA	3 cut(s)	594, 672, 678
SatI	GCNGC	2 cut(s)	129, 645
Sau3AI	GATC	4 cut(s)	41, 59, 376, 626
Sau96I	GGNCC	2 cut(s)	78, 143
SchI	GAGTC	2 cut(s)	469, 794
ScrFI	CCNGG	3 cut(s)	19, 95, 269
SduI	GDGCHC	4 cut(s)	138, 438, 570, 604
SfaNI	GCATC	5 cut(s)	45, 263, 269, 319, 666
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	2 cut(s)	78, 143
SmiMI	CAYNNNNRTG	2 cut(s)	315, 769
Sse9I	AATT	2 cut(s)	114, 538
SsiI	CCGC	2 cut(s)	76, 563
SspMI	CTAG	1 cut(s)	741
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	3 cut(s)	17, 93, 267
StyI	CCWWGG	3 cut(s)	31, 288, 650
TaaI	ACNGT	2 cut(s)	385, 719
TaqI	TCGA	2 cut(s)	87, 231
TasI	AATT	2 cut(s)	114, 538
TatI	WGTACW	1 cut(s)	416
Tru1I	TTAA	3 cut(s)	594, 672, 678
Tru9I	TTAA	3 cut(s)	594, 672, 678
TscAI	CASTG	2 cut(s)	445, 724
TseFI	GTSAC	2 cut(s)	361, 760
TseI	GCWGC	2 cut(s)	128, 644
Tsp45I	GTSAC	2 cut(s)	361, 760
TspGWI	ACGGA	2 cut(s)	72, 156
TspRI	CASTG	2 cut(s)	445, 724
VpaK11BI	GGWCC	2 cut(s)	78, 143
XceI	RCATGY	1 cut(s)	774
XspI	CTAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.