Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005798

Physical Location & Seq

Genomic Coordinates Forward (+)

86363212 .. 86364815

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG640100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTACATCTTCATGGTAAAGTGATTTTTATTTCAAGAGATTCCATCCCACTAAAGTTCAAAATTAATTCATGTAGCCCAACTGCTGTGGTTAATGGGGCTCATCTAACCCCACGAGCAAAGCGTTCACGGCGTGGAAAGGCTGCTCCAAGGAGCATCACATCAGTTCTTAATCTTAAAGATGAGGTTTCCATTGCTACTGCTGGAGCTGTGGACAGTGTTGTCAAGTTCTGGGACACTAGAAGTTTGAAAAGTATAGTCACACAGACATGTCCTCATATGGAGTCAAATGAGAAGGAAAGAAGATTTCATGGCATAACTAGCTTATCCCAAGATTTAAATGGAGTGTTTGTTTCAGCCTCTTGTATGGACAACAGCATTTATTTGTATAATGTGCTTCAGCTAGAAAAGGGTCCTATGCAATCCTTCTCTGGAGGCCGGATTGAATCTTTTTTTGTAAAGTCGGCTATTAGCCCTGATGCTGCTCACATACTCAGTGGTTCTAGTGATGGAAACGCCTACATTTGGCAGGTTAGAATTAGTTCTCCTTTGGTGCTTAGGGATATTGGTCTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000151 GO:0000209 GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010564 GO:0010948 GO:0015630 GO:0016567 GO:0018130 GO:0019438 GO:0019538 GO:0019941 GO:0019985 GO:0023052 GO:0030163 GO:0031461 GO:0031464 GO:0031465 GO:0031570 GO:0031572 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0071897 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080008 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901987 GO:1901988 GO:1902494 GO:1902749 GO:1902750 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

192

Amino Acids

20.97

Weight (kDa)

9.67

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	53 - 179	3e-09	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27640 AT3G27640
fragaria_vesca	FvH4_6g51280 FvH4_6g51280 FvH4_6g51280 FvH4_6g51280
malus_domestica	MD09G1027800.v1.1 MD17G1027700.v1.1 MD17G1028200.v1.1
prunus_persica	Prupe.3G290400_v2.0.a1 Prupe.3G291000_v2.0.a1
pyrus_communis	pycom111g02180
rosa_chinensis	RchiOBHm_Chr2g0172901
rosa_laevigata	RLG00000022140
rosa_multiflora	Rmu_co8216202.1_g000001 Rmu_sc0002979.1_g000002 Rmu_sc0013380.1_g000001 Rmu_sc0015618.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079450
rosa_rugosa	Rorug02G0563200 Rorug02G0563400
rosa_samantha	Rh2AG640100 Rh2AG640200 Rh2BG653600 Rh2BG653700 Rh2CG619200 Rh2DG667200
rosa_wichuraiana	Rw2G052840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	383
AdeI	CACNNNGTG	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	525
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	4 cut(s)	36, 61, 250, 446
AluBI	AGCT	3 cut(s)	209, 324, 403
AluI	AGCT	3 cut(s)	209, 324, 403
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	2 cut(s)	143, 482
AseI	ATTAAT	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	103
BauI	CACGAG	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	130, 469
BccI	CCATC	2 cut(s)	53, 503
BceAI	ACGGC	1 cut(s)	146
BfaI	CTAG	4 cut(s)	240, 321, 404, 504
BfuAI	ACCTGC	1 cut(s)	520
BisI	GCNGC	2 cut(s)	144, 483
BlsI	GCNGC	2 cut(s)	145, 484
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	414
BmsI	GCATC	2 cut(s)	165, 469
BpmI	CTGGAG	2 cut(s)	225, 453
Bpu10I	CCTNAGC	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	525
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	525
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	508
BseXI	GCAGC	2 cut(s)	130, 469
BshFI	GGCC	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	439
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	525
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	414
BspMI	ACCTGC	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	149
BssSI	CACGAG	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	149
Bst2BI	CACGAG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	218
BstDEI	CTNAG	2 cut(s)	494, 557
BstF5I	GGATG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 321
BstNSI	RCATGY	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	130, 469
BsuRI	GGCC	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	45
BtsIMutI	CAGTG	2 cut(s)	223, 502
BveI	ACCTGC	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	413
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	4 cut(s)	14, 72, 270, 311
DdeI	CTNAG	2 cut(s)	494, 557
DraI	TTTAAA	1 cut(s)	339
DraIII	CACNNNGTG	1 cut(s)	134
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	4 cut(s)	17, 75, 273, 314
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	4 cut(s)	13, 71, 269, 310
FauNDI	CATATG	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	144, 483
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	144, 483
FspBI	CTAG	4 cut(s)	240, 321, 404, 504
GluI	GCNGC	2 cut(s)	144, 483
GsuI	CTGGAG	2 cut(s)	225, 453
HaeIII	GGCC	1 cut(s)	438
HapII	CCGG	1 cut(s)	439
Hin1II	CATG	4 cut(s)	17, 75, 273, 314
HinfI	GANTC	3 cut(s)	41, 284, 446
HpaII	CCGG	1 cut(s)	439
Hpy166II	GTNNAC	2 cut(s)	128, 214
Hpy188III	TCNNGA	2 cut(s)	36, 432
Hpy8I	GTNNAC	2 cut(s)	128, 214
HpyAV	CCTTC	2 cut(s)	289, 436
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 321
HpyF3I	CTNAG	2 cut(s)	494, 557
Hsp92II	CATG	4 cut(s)	17, 75, 273, 314
LmnI	GCTCC	3 cut(s)	151, 153, 206
LpnPI	CCDG	6 cut(s)	189, 217, 417, 452, 489, 515
Lsp1109I	GCAGC	2 cut(s)	130, 469
LweI	GCATC	2 cut(s)	165, 469
MaeI	CTAG	4 cut(s)	240, 321, 404, 504
MaeIII	GTNAC	2 cut(s)	3, 259
MboII	GAAGA	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	3 cut(s)	63, 67, 537
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	4 cut(s)	178, 285, 370, 428
MroXI	GAANNNNTTC	1 cut(s)	541
MseI	TTAA	5 cut(s)	66, 93, 171, 177, 338
MslI	CAYNNNNRTG	2 cut(s)	12, 268
MspI	CCGG	1 cut(s)	439
MwoI	GCNNNNNNNGC	2 cut(s)	130, 321
NdeI	CATATG	1 cut(s)	279
NlaIII	CATG	4 cut(s)	17, 75, 273, 314
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	273
PciI	ACATGT	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	541
PfeI	GAWTC	2 cut(s)	41, 446
PkrI	GCNGC	2 cut(s)	145, 484
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PpuMI	RGGWCCY	1 cut(s)	413
PscI	ACATGT	1 cut(s)	269
PshBI	ATTAAT	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	413
PspPPI	RGGWCCY	1 cut(s)	413
RseI	CAYNNNNRTG	2 cut(s)	12, 268
SaqAI	TTAA	5 cut(s)	66, 93, 171, 177, 338
SatI	GCNGC	2 cut(s)	144, 483
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	5 cut(s)	189, 211, 326, 405, 534
SfaNI	GCATC	2 cut(s)	165, 469
SinI	GGWCC	1 cut(s)	413
SmiI	ATTTAAAT	1 cut(s)	339
SmiMI	CAYNNNNRTG	2 cut(s)	12, 268
Sse9I	AATT	3 cut(s)	63, 67, 537
SspMI	CTAG	4 cut(s)	240, 321, 404, 504
StyI	CCWWGG	1 cut(s)	149
SwaI	ATTTAAAT	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	218
TasI	AATT	3 cut(s)	63, 67, 537
TfiI	GAWTC	2 cut(s)	41, 446
Tru1I	TTAA	5 cut(s)	66, 93, 171, 177, 338
Tru9I	TTAA	5 cut(s)	66, 93, 171, 177, 338
TscAI	CASTG	2 cut(s)	223, 502
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	143, 482
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	60, 299
TspRI	CASTG	2 cut(s)	223, 502
VpaK11BI	GGWCC	1 cut(s)	413
VspI	ATTAAT	1 cut(s)	66
XceI	RCATGY	1 cut(s)	273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	541
XspI	CTAG	4 cut(s)	240, 321, 404, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.