Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005798

Physical Location & Seq

Genomic Coordinates Forward (+)

89171412 .. 89175092

Gene Structure 3681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG667200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGAGACCTCAAATCCCCGGTCGTTCTTCCAAGGCATCAGATCCAGAGAGCTACACGGATCCCGAGTTCCGAAGCGGTCCTACATCGATTGCCTGGCTTCGGATTTCTCCGAAATTGGAGCCATTGCAGCCGAGCACAACGGACCTCCGATGGCCATTTCGTTCGGCAAGACCAGTAGAAACTCTCACATCGTCGCCATGTCTGATGAGGATGGGTACCTGAGCTTGTTCGATACGCGTCGCAAGTTCTCGGCATCTGCATCTCACCGGGAAAATGCAGATAGAACCAAGGTTTACGATTGGGTTGCGCATCAAAATGCCGTAGATTATCGTCTCCGGTTCAAGAGATGGCTCCTTTGCTCTCTGGGATATGAGATTATGTTACATCTTCATGGTAAAGTGATTTTTATTTCAAGAGATTCCATCCCACTAAAGTTCAAAATTAATTCATGTAGCCCAACTGCTGTGGTTAATGGGGCTCATCTAACCCCACGAGCAAAGCGTTCTCGGCGTGGAAAGGCTGCTCCAAGGAGCATCACATCAGTTCTTAATCTTAAAGATGAGGTTTCCATTGCTACTGCTGGAGCTGTGGACAGTGTTGTCAAGTTCTGGGACACTAGAAGTTTGAAAAGTATAGTCACACAGACATGTCCTCATATGGAGTCAAATGAGAAGGAAAGAAGATTTCATGGCATAACAAGCTTATCCCAAGATTTAAATGGAGTGTTTGTTTCAGCCTCTTGTATGGACAACAGCATTTATTTGTATAATGTACTTCAGCTAGAAAAGGGTCCTATGCAATCCTTCTCTGGAGGCCGGATTGAATCTTTTTTTGTAAAGTCGGCTATTAGCCCTGATGCTGCTCACATACTCAGTGGTTCTAGTGATGGAAACGCCTACATTTGGCAGGTAAACAAGCCTCAAGAAGATCCAGTAATATTGAAAAGCCATGACGGAGAAGTTACAGCAGTTGATTGGTCCCATTTTGAGGTTGGGAAGATAGCAACTTCTTCAGATGATTTTACGGTTCGCATCTGGAACTCTGAGAATCGTTACTGCCCAAGCACACCATCACCATCTGCAATTCGAAGAAGAATAATGGCAATCCCAGGTGCAGAATGTAGAAGGCTTCTGATGAATGAATCAATGCATATCTCAAAGGATTCCAGAAATTCCTGTCCCTTGGATGAAGGACTAGATGAAAGTAACTCACTTCATCCAATTAAAATGCCTAAAATCTGTACTCCTGAATCACAGAAGAAGCAATCCAAGTTAGATTCTGACATGAGTGAAATGTTTGAAAAGACCCCTGAAGCTACATTGAAGAGCCCCTCTTCTGTTCTGAACCCTCCCTCCTCTCTGAAAAGGAAAACTATCCGTGATTACTTTGCAGCACCTACTCTGAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000151 GO:0000209 GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010564 GO:0010948 GO:0015630 GO:0016567 GO:0018130 GO:0019438 GO:0019538 GO:0019941 GO:0019985 GO:0023052 GO:0030163 GO:0031461 GO:0031464 GO:0031465 GO:0031570 GO:0031572 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0071897 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080008 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901987 GO:1901988 GO:1902494 GO:1902749 GO:1902750 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

470

Amino Acids

52.5

Weight (kDa)

9.07

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_2nd	PF25172	174 - 350	1.3e-06	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	177 - 352	4e-11	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	179 - 347	8.5e-13	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	191 - 350	3.8e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	192 - 356	1.3e-13	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	282 - 356	4.6e-10	THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	282 - 353	1.5e-06	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	286 - 353	6.6e-06	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27640 AT3G27640
fragaria_vesca	FvH4_6g51280 FvH4_6g51280 FvH4_6g51280 FvH4_6g51280
malus_domestica	MD09G1027800.v1.1 MD17G1027700.v1.1 MD17G1028200.v1.1
prunus_persica	Prupe.3G290400_v2.0.a1 Prupe.3G291000_v2.0.a1
pyrus_communis	pycom111g02180
rosa_chinensis	RchiOBHm_Chr2g0172901
rosa_laevigata	RLG00000022140
rosa_multiflora	Rmu_co8216202.1_g000001 Rmu_sc0002979.1_g000002 Rmu_sc0013380.1_g000001 Rmu_sc0015618.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079450
rosa_rugosa	Rorug02G0563200 Rorug02G0563400
rosa_samantha	Rh2AG640100 Rh2AG640200 Rh2BG653600 Rh2BG653700 Rh2CG619200 Rh2DG667200
rosa_wichuraiana	Rw2G052840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	599
Acc16I	TGCGCA	1 cut(s)	309
Acc36I	ACCTGC	1 cut(s)	898
Acc65I	GGTACC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	216
AccII	CGCG	1 cut(s)	238
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	4 cut(s)	36, 54, 67, 923
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	1171
AcuI	CTGAAG	3 cut(s)	761, 996, 1332
AfaI	GTAC	3 cut(s)	218, 774, 1243
AfiI	CCNNNNNNNGG	3 cut(s)	100, 903, 988
AflIII	ACRYGT	2 cut(s)	236, 647
AgsI	TTSAA	8 cut(s)	343, 414, 439, 628, 824, 943, 1301, 1324
AjnI	CCWGG	2 cut(s)	93, 1108
AloI	GAACNNNNNNTCC	4 cut(s)	51, 83, 1337, 1369
AluBI	AGCT	6 cut(s)	52, 225, 587, 702, 781, 1316
AluI	AGCT	6 cut(s)	52, 225, 587, 702, 781, 1316
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	4 cut(s)	36, 54, 67, 923
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	2 cut(s)	153, 814
ApeKI	GCWGC	4 cut(s)	128, 521, 860, 1391
ApoI	RAATTY	1 cut(s)	1171
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AseI	ATTAAT	1 cut(s)	444
Asp718I	GGTACC	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	4 cut(s)	78, 143, 791, 978
AsuC2I	CCSGG	2 cut(s)	19, 269
AsuHPI	GGTGA	2 cut(s)	257, 1065
AsuII	TTCGAA	1 cut(s)	1087
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	4 cut(s)	78, 143, 791, 978
BalI	TGGCCA	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	216
BanII	GRGCYC	2 cut(s)	481, 1331
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BauI	CACGAG	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	4 cut(s)	140, 508, 847, 1403
BccI	CCATC	7 cut(s)	145, 206, 342, 431, 881, 1078, 1084
BceAI	ACGGC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	2 cut(s)	95, 1110
BcnI	CCSGG	2 cut(s)	19, 269
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	4 cut(s)	618, 782, 882, 1196
BfuAI	ACCTGC	1 cut(s)	898
BisI	GCNGC	4 cut(s)	129, 522, 861, 1392
BlsI	GCNGC	4 cut(s)	130, 523, 862, 1393
Bme1390I	CCNGG	4 cut(s)	19, 95, 269, 1110
Bme18I	GGWCC	4 cut(s)	78, 143, 791, 978
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	4 cut(s)	78, 143, 791, 978
BmiI	GGNNCC	6 cut(s)	61, 121, 218, 353, 792, 980
BmrFI	CCNGG	4 cut(s)	19, 95, 269, 1110
BmsI	GCATC	7 cut(s)	45, 263, 269, 319, 543, 847, 1041
BpmI	CTGGAG	2 cut(s)	603, 831
Bpu10I	CCTNAGC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	1087
BpuEI	CTTGAG	1 cut(s)	906
BpuMI	CCSGG	2 cut(s)	19, 269
Bsa29I	ATCGAT	1 cut(s)	87
BsaJI	CCNNGG	6 cut(s)	17, 31, 288, 527, 1108, 1182
BsaWI	WCCGGW	1 cut(s)	336
BsaXI	ACNNNNNCTCC	4 cut(s)	714, 744, 1337, 1367
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 903, 988
Bse1I	ACTGG	2 cut(s)	174, 932
Bse3DI	GCAATG	2 cut(s)	123, 570
BseBI	CCWGG	2 cut(s)	95, 1110
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	6 cut(s)	17, 31, 288, 527, 1108, 1182
BseGI	GGATG	4 cut(s)	217, 423, 1192, 1216
BseLI	CCNNNNNNNGG	3 cut(s)	100, 903, 988
BseMI	GCAATG	2 cut(s)	123, 570
BseMII	CTCAG	3 cut(s)	212, 886, 1035
BseNI	ACTGG	2 cut(s)	174, 932
BseRI	GAGGAG	1 cut(s)	1345
BseXI	GCAGC	4 cut(s)	140, 508, 847, 1403
BsgI	GTGCAG	1 cut(s)	1134
Bsh1236I	CGCG	1 cut(s)	238
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	155, 816
BshNI	GGYRCC	1 cut(s)	216
BshVI	ATCGAT	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	4 cut(s)	19, 268, 337, 817
BslFI	GGGAC	3 cut(s)	626, 964, 1164
BslI	CCNNNNNNNGG	3 cut(s)	100, 903, 988
BsmAI	GTCTC	1 cut(s)	338
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	3 cut(s)	626, 964, 1164
BsnI	GGCC	2 cut(s)	155, 816
BsoBI	CYCGRG	1 cut(s)	63
Bsp119I	TTCGAA	1 cut(s)	1087
Bsp1286I	GDGCHC	3 cut(s)	138, 481, 1331
Bsp143I	GATC	3 cut(s)	41, 59, 928
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	2 cut(s)	155, 816
BspCNI	CTCAG	3 cut(s)	213, 885, 1036
BspDI	ATCGAT	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	6 cut(s)	61, 121, 218, 353, 792, 980
BspMI	ACCTGC	1 cut(s)	898
BspPI	GGATC	4 cut(s)	36, 54, 67, 923
BspQI	GCTCTTC	1 cut(s)	1319
BspT104I	TTCGAA	1 cut(s)	1087
BspT107I	GGYRCC	1 cut(s)	216
BsrDI	GCAATG	2 cut(s)	123, 570
BsrI	ACTGG	2 cut(s)	174, 932
BssECI	CCNNGG	6 cut(s)	17, 31, 288, 527, 1108, 1182
BssMI	GATC	3 cut(s)	41, 59, 928
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	4 cut(s)	31, 288, 527, 1182
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	95, 1110
Bst4CI	ACNGT	2 cut(s)	596, 1027
Bst6I	CTCTTC	2 cut(s)	1319, 1339
BstBI	TTCGAA	1 cut(s)	1087
BstDEI	CTNAG	3 cut(s)	221, 872, 1044
BstF5I	GGATG	4 cut(s)	217, 423, 1192, 1216
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	3 cut(s)	44, 62, 931
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	3 cut(s)	41, 59, 928
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 508, 699
BstNI	CCWGG	2 cut(s)	95, 1110
BstNSI	RCATGY	1 cut(s)	651
BstSCI	CCNGG	4 cut(s)	17, 93, 267, 1108
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	4 cut(s)	140, 508, 847, 1403
BstX2I	RGATCY	3 cut(s)	41, 59, 928
BstYI	RGATCY	3 cut(s)	41, 59, 928
Bsu15I	ATCGAT	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	155, 816
BsuTUI	ATCGAT	1 cut(s)	87
BtsCI	GGATG	4 cut(s)	217, 423, 1192, 1216
BtsIMutI	CAGTG	2 cut(s)	601, 880
BveI	ACCTGC	1 cut(s)	898
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	4 cut(s)	78, 143, 791, 978
ClaI	ATCGAT	1 cut(s)	87
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	217, 773, 1242
CspCI	CAANNNNNGTGG	2 cut(s)	447, 482
CviAII	CATG	7 cut(s)	199, 392, 450, 648, 689, 950, 1285
CviQI	GTAC	3 cut(s)	217, 773, 1242
DdeI	CTNAG	3 cut(s)	221, 872, 1044
DpnI	GATC	3 cut(s)	43, 61, 930
DpnII	GATC	3 cut(s)	41, 59, 928
DraI	TTTAAA	1 cut(s)	717
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	1319, 1339
EarI	CTCTTC	2 cut(s)	1319, 1339
Eco130I	CCWWGG	4 cut(s)	31, 288, 527, 1182
Eco24I	GRGCYC	2 cut(s)	481, 1331
Eco47I	GGWCC	4 cut(s)	78, 143, 791, 978
Eco57I	CTGAAG	3 cut(s)	761, 996, 1332
Eco88I	CYCGRG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	791
EcoRII	CCWGG	2 cut(s)	93, 1108
EcoT14I	CCWWGG	4 cut(s)	31, 288, 527, 1182
EcoT22I	ATGCAT	1 cut(s)	1152
EcoT38I	GRGCYC	2 cut(s)	481, 1331
ErhI	CCWWGG	4 cut(s)	31, 288, 527, 1182
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	7 cut(s)	202, 395, 453, 651, 692, 953, 1288
FaqI	GGGAC	3 cut(s)	626, 964, 1164
FatI	CATG	7 cut(s)	198, 391, 449, 647, 688, 949, 1284
FauNDI	CATATG	1 cut(s)	657
Fnu4HI	GCNGC	4 cut(s)	129, 522, 861, 1392
FokI	GGATG	4 cut(s)	224, 410, 1199, 1203
FriOI	GRGCYC	2 cut(s)	481, 1331
Fsp4HI	GCNGC	4 cut(s)	129, 522, 861, 1392
FspBI	CTAG	4 cut(s)	618, 782, 882, 1196
FspI	TGCGCA	1 cut(s)	309
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	4 cut(s)	129, 522, 861, 1392
GsuI	CTGGAG	2 cut(s)	603, 831
HaeIII	GGCC	2 cut(s)	155, 816
HapII	CCGG	4 cut(s)	19, 268, 337, 817
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	7 cut(s)	202, 395, 453, 651, 692, 953, 1288
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HindIII	AAGCTT	1 cut(s)	700
HinfI	GANTC	8 cut(s)	419, 662, 824, 1048, 1142, 1163, 1250, 1277
HpaII	CCGG	4 cut(s)	19, 268, 337, 817
HphI	GGTGA	2 cut(s)	257, 1065
Hpy166II	GTNNAC	3 cut(s)	295, 592, 913
Hpy188III	TCNNGA	9 cut(s)	45, 63, 343, 414, 810, 923, 1036, 1167, 1247
Hpy8I	GTNNAC	3 cut(s)	295, 592, 913
Hpy99I	CGWCG	2 cut(s)	197, 243
HpyAV	CCTTC	4 cut(s)	667, 814, 1119, 1184
HpyCH4III	ACNGT	2 cut(s)	596, 1027
HpyCH4V	TGCA	8 cut(s)	128, 260, 278, 799, 1082, 1115, 1150, 1391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 508, 699
HpyF3I	CTNAG	3 cut(s)	221, 872, 1044
Hsp92II	CATG	7 cut(s)	202, 395, 453, 651, 692, 953, 1288
HspAI	GCGC	1 cut(s)	308
KpnI	GGTACC	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	41, 59, 928
LguI	GCTCTTC	1 cut(s)	1319
LmnI	GCTCC	5 cut(s)	119, 357, 529, 531, 584
Lsp1109I	GCAGC	4 cut(s)	140, 508, 847, 1403
LweI	GCATC	7 cut(s)	45, 263, 269, 319, 543, 847, 1041
MaeI	CTAG	4 cut(s)	618, 782, 882, 1196
MaeIII	GTNAC	5 cut(s)	381, 637, 961, 1052, 1205
MalI	GATC	3 cut(s)	43, 61, 930
MboI	GATC	3 cut(s)	41, 59, 928
MflI	RGATCY	3 cut(s)	41, 59, 928
MhlI	GDGCHC	3 cut(s)	138, 481, 1331
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	6 cut(s)	114, 441, 445, 1083, 1171, 1221
MluI	ACGCGT	1 cut(s)	236
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	671
Mox20I	TGGCCA	1 cut(s)	155
Mph1103I	ATGCAT	1 cut(s)	1152
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	6 cut(s)	444, 471, 549, 555, 716, 1224
MslI	CAYNNNNRTG	3 cut(s)	315, 390, 646
Msp20I	TGGCCA	1 cut(s)	155
MspI	CCGG	4 cut(s)	19, 268, 337, 817
MspR9I	CCNGG	4 cut(s)	19, 95, 269, 1110
MvaI	CCWGG	2 cut(s)	95, 1110
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	128, 508, 699
NciI	CCSGG	2 cut(s)	19, 269
NdeI	CATATG	1 cut(s)	657
NdeII	GATC	3 cut(s)	41, 59, 928
NlaIII	CATG	7 cut(s)	202, 395, 453, 651, 692, 953, 1288
NlaIV	GGNNCC	6 cut(s)	61, 121, 218, 353, 792, 980
NmeAIII	GCCGAG	3 cut(s)	157, 230, 487
NmuCI	GTSAC	1 cut(s)	637
NsbI	TGCGCA	1 cut(s)	309
NsiI	ATGCAT	1 cut(s)	1152
NspI	RCATGY	1 cut(s)	651
NspV	TTCGAA	1 cut(s)	1087
PciI	ACATGT	1 cut(s)	647
PciSI	GCTCTTC	1 cut(s)	1319
PcsI	WCGNNNNNNNCGW	1 cut(s)	499
PfeI	GAWTC	7 cut(s)	419, 824, 1048, 1142, 1163, 1250, 1277
PkrI	GCNGC	4 cut(s)	130, 523, 862, 1393
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
PpuMI	RGGWCCY	1 cut(s)	791
PscI	ACATGT	1 cut(s)	647
PshBI	ATTAAT	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	791
Psp6I	CCWGG	2 cut(s)	93, 1108
PspGI	CCWGG	2 cut(s)	93, 1108
PspN4I	GGNNCC	6 cut(s)	61, 121, 218, 353, 792, 980
PspPI	GGNCC	4 cut(s)	78, 143, 791, 978
PspPPI	RGGWCCY	1 cut(s)	791
PsuI	RGATCY	3 cut(s)	41, 59, 928
RsaI	GTAC	3 cut(s)	218, 774, 1243
RsaNI	GTAC	3 cut(s)	217, 773, 1242
RseI	CAYNNNNRTG	3 cut(s)	315, 390, 646
SapI	GCTCTTC	1 cut(s)	1319
SaqAI	TTAA	6 cut(s)	444, 471, 549, 555, 716, 1224
SatI	GCNGC	4 cut(s)	129, 522, 861, 1392
Sau3AI	GATC	3 cut(s)	41, 59, 928
Sau96I	GGNCC	4 cut(s)	78, 143, 791, 978
SchI	GAGTC	1 cut(s)	671
ScrFI	CCNGG	4 cut(s)	19, 95, 269, 1110
SduI	GDGCHC	3 cut(s)	138, 481, 1331
SfaNI	GCATC	7 cut(s)	45, 263, 269, 319, 543, 847, 1041
SfuI	TTCGAA	1 cut(s)	1087
SinI	GGWCC	4 cut(s)	78, 143, 791, 978
SmiI	ATTTAAAT	1 cut(s)	717
SmiMI	CAYNNNNRTG	3 cut(s)	315, 390, 646
SmlI	CTYRAG	1 cut(s)	921
SmoI	CTYRAG	1 cut(s)	921
Sse9I	AATT	6 cut(s)	114, 441, 445, 1083, 1171, 1221
SsiI	CCGC	1 cut(s)	76
SspI	AATATT	1 cut(s)	939
SspMI	CTAG	4 cut(s)	618, 782, 882, 1196
StyD4I	CCNGG	4 cut(s)	17, 93, 267, 1108
StyI	CCWWGG	4 cut(s)	31, 288, 527, 1182
SwaI	ATTTAAAT	1 cut(s)	717
TaaI	ACNGT	2 cut(s)	596, 1027
TaqI	TCGA	3 cut(s)	87, 231, 1087
TasI	AATT	6 cut(s)	114, 441, 445, 1083, 1171, 1221
TatI	WGTACW	2 cut(s)	772, 1241
TfiI	GAWTC	7 cut(s)	419, 824, 1048, 1142, 1163, 1250, 1277
Tru1I	TTAA	6 cut(s)	444, 471, 549, 555, 716, 1224
Tru9I	TTAA	6 cut(s)	444, 471, 549, 555, 716, 1224
TscAI	CASTG	2 cut(s)	601, 880
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	4 cut(s)	128, 521, 860, 1391
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	8 cut(s)	380, 438, 677, 1151, 1155, 1203, 1205, 1215
TspGWI	ACGGA	4 cut(s)	72, 156, 969, 1367
TspRI	CASTG	2 cut(s)	601, 880
VpaK11BI	GGWCC	4 cut(s)	78, 143, 791, 978
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	1 cut(s)	1171
XceI	RCATGY	1 cut(s)	651
XcmI	CCANNNNNNNNNTGG	2 cut(s)	716, 989
XspI	CTAG	4 cut(s)	618, 782, 882, 1196
Zsp2I	ATGCAT	1 cut(s)	1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.