Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005798

Physical Location & Seq

Genomic Coordinates Reverse (-)

26066413 .. 26068110

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G290400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGACAGCTTCTGGTGATCAAACTATCAAGGTATGGGATATTCAGGAAAAGAAATGTACTGCAATACTGATGGGGCACACAGGAAGTGTGAAATCTCTCTGTCCTCAACCAACTAATCCTGAGATTATTGTCTCTGGTTCGAGAGATGGCTCCTTTGCTCTTTGGGATATGAGATGTAATTCAAGCTCCAAAAATATTCACGGGGAGATTGCAATATGGCGCGGAAAGGCTGCTTCCATGAGCATCACAGCAGTTCTTTATCTTAAAGATGAGGTTTCCATTGCTGCTGGTGGAGCTGTGGACAGCATTGTCAAGTTTTGGGATACTAGAAGTTTGAAAAATGTCGTCACACAGACATCCCCTCACCTAGAGTCTACTGAGAAGTCAATTATTAGCCCTGATGCTGCTCACATACTCAGTGGTTCCAGTGATGGAAATGCCTACATTTGGCAGGTAAACAAGCCTCAAGAAGATCCTGTAATATTGAAAAGCCATGACGGAGAAGTTACAGCAGTGGATTGGTCCCATTTTGAGGTTGGGAAGATGGCAACTTCTTCGGATGATTTTACAGTTCGCATTTGGAACTCTCAGAATAGTTACTGCCCAAGCACAAACTCACCATCTGTCATCCGGAGGAGAGTCATGGCAATCCGCGGTGCAGAATGTAGAAAGCTTCTAATGAATGAATCATTGCATACTTCAAAGGACTCTGGAAATCAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000151 GO:0000209 GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010564 GO:0010948 GO:0015630 GO:0016567 GO:0018130 GO:0019438 GO:0019538 GO:0019941 GO:0019985 GO:0023052 GO:0030163 GO:0031461 GO:0031464 GO:0031465 GO:0031570 GO:0031572 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0071897 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080008 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901987 GO:1901988 GO:1902494 GO:1902749 GO:1902750 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

242

Amino Acids

26.34

Weight (kDa)

6.65

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27640 AT3G27640
fragaria_vesca	FvH4_6g51280 FvH4_6g51280 FvH4_6g51280 FvH4_6g51280
malus_domestica	MD09G1027800.v1.1 MD17G1027700.v1.1 MD17G1028200.v1.1
prunus_persica	Prupe.3G290400_v2.0.a1 Prupe.3G291000_v2.0.a1
pyrus_communis	pycom111g02180
rosa_chinensis	RchiOBHm_Chr2g0172901
rosa_laevigata	RLG00000022140
rosa_multiflora	Rmu_co8216202.1_g000001 Rmu_sc0002979.1_g000002 Rmu_sc0013380.1_g000001 Rmu_sc0015618.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079450
rosa_rugosa	Rorug02G0563200 Rorug02G0563400
rosa_samantha	Rh2AG640100 Rh2AG640200 Rh2BG653600 Rh2BG653700 Rh2CG619200 Rh2DG667200
rosa_wichuraiana	Rw2G052840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
Acc36I	ACCTGC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	374
AccII	CGCG	2 cut(s)	222, 654
AccIII	TCCGGA	1 cut(s)	630
AciI	CCGC	3 cut(s)	222, 652, 654
AclWI	GGATC	1 cut(s)	467
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	2 cut(s)	447, 532
AgsI	TTSAA	4 cut(s)	183, 337, 487, 702
AluBI	AGCT	4 cut(s)	8, 186, 296, 673
AluI	AGCT	4 cut(s)	8, 186, 296, 673
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	1 cut(s)	467
AlwNI	CAGNNNCTG	1 cut(s)	11
Aor13HI	TCCGGA	1 cut(s)	630
ApeKI	GCWGC	3 cut(s)	230, 284, 404
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	522
AsuHPI	GGTGA	3 cut(s)	26, 356, 609
AvaII	GGWCC	1 cut(s)	522
BaeGI	GKGCMC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	217, 271, 391
BccI	CCATC	5 cut(s)	64, 140, 425, 538, 628
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciVI	GTATCC	1 cut(s)	316
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	3 cut(s)	327, 368, 724
BfuAI	ACCTGC	1 cut(s)	442
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	3 cut(s)	231, 285, 405
BlsI	GCNGC	3 cut(s)	232, 286, 406
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	522
BmiI	GGNNCC	3 cut(s)	151, 424, 524
BmsI	GCATC	2 cut(s)	252, 391
BpuEI	CTTGAG	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	652
BsaWI	WCCGGW	1 cut(s)	630
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 532
Bse1I	ACTGG	1 cut(s)	426
Bse3DI	GCAATG	2 cut(s)	279, 689
BseAI	TCCGGA	1 cut(s)	630
BseDI	CCNNGG	1 cut(s)	652
BseGI	GGATG	3 cut(s)	356, 565, 627
BseLI	CCNNNNNNNGG	2 cut(s)	447, 532
BseMI	GCAATG	2 cut(s)	279, 689
BseMII	CTCAG	4 cut(s)	111, 369, 430, 602
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	649
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	217, 271, 391
BsgI	GTGCAG	1 cut(s)	678
Bsh1236I	CGCG	2 cut(s)	222, 654
BsiSI	CCGG	1 cut(s)	631
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	2 cut(s)	447, 532
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp13I	TCCGGA	1 cut(s)	630
Bsp143I	GATC	2 cut(s)	16, 472
BspACI	CCGC	3 cut(s)	222, 652, 654
BspCNI	CTCAG	4 cut(s)	112, 370, 429, 601
BspEI	TCCGGA	1 cut(s)	630
BspFNI	CGCG	2 cut(s)	222, 654
BspLI	GGNNCC	3 cut(s)	151, 424, 524
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	467
BsrDI	GCAATG	2 cut(s)	279, 689
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	652
BssMI	GATC	2 cut(s)	16, 472
Bst4CI	ACNGT	1 cut(s)	571
BstDEI	CTNAG	4 cut(s)	120, 378, 416, 588
BstDSI	CCRYGG	1 cut(s)	652
BstF5I	GGATG	3 cut(s)	356, 565, 627
BstFNI	CGCG	2 cut(s)	222, 654
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	2 cut(s)	19, 475
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	2 cut(s)	16, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	78
BstUI	CGCG	2 cut(s)	222, 654
BstV1I	GCAGC	3 cut(s)	217, 271, 391
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuI	GTATCC	1 cut(s)	316
BtgI	CCRYGG	1 cut(s)	652
BtsCI	GGATG	3 cut(s)	356, 565, 627
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	3 cut(s)	424, 433, 519
BveI	ACCTGC	1 cut(s)	442
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	522
Cfr42I	CCGCGG	1 cut(s)	655
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	3 cut(s)	238, 494, 643
CviJI	RGCY	9 cut(s)	8, 150, 186, 230, 296, 396, 463, 492, 673
CviKI_1	RGCY	9 cut(s)	8, 150, 186, 230, 296, 396, 463, 492, 673
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	4 cut(s)	120, 378, 416, 588
DpnI	GATC	2 cut(s)	18, 474
DpnII	GATC	2 cut(s)	16, 472
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	522
FaeI	CATG	3 cut(s)	241, 497, 646
FaiI	YATR	8 cut(s)	34, 170, 217, 239, 413, 495, 644, 696
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	3 cut(s)	237, 493, 642
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	3 cut(s)	231, 285, 405
FokI	GGATG	3 cut(s)	343, 572, 614
Fsp4HI	GCNGC	3 cut(s)	231, 285, 405
FspBI	CTAG	3 cut(s)	327, 368, 724
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	3 cut(s)	231, 285, 405
HapII	CCGG	1 cut(s)	631
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	241, 497, 646
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	4 cut(s)	371, 639, 686, 707
HpaII	CCGG	1 cut(s)	631
HphI	GGTGA	3 cut(s)	26, 356, 609
Hpy166II	GTNNAC	3 cut(s)	301, 375, 457
Hpy188I	TCNGA	2 cut(s)	559, 591
Hpy188III	TCNNGA	6 cut(s)	44, 119, 141, 467, 631, 711
Hpy8I	GTNNAC	3 cut(s)	301, 375, 457
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	4 cut(s)	62, 212, 659, 694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	4 cut(s)	120, 378, 416, 588
Hsp92II	CATG	3 cut(s)	241, 497, 646
HspAI	GCGC	1 cut(s)	220
Kpn2I	TCCGGA	1 cut(s)	630
Ksp22I	TGATCA	1 cut(s)	16
KspI	CCGCGG	1 cut(s)	655
Kzo9I	GATC	2 cut(s)	16, 472
LmnI	GCTCC	3 cut(s)	155, 191, 293
Lsp1109I	GCAGC	3 cut(s)	217, 271, 391
LweI	GCATC	2 cut(s)	252, 391
MaeI	CTAG	3 cut(s)	327, 368, 724
MaeIII	GTNAC	3 cut(s)	346, 505, 596
MalI	GATC	2 cut(s)	18, 474
MboI	GATC	2 cut(s)	16, 472
MboII	GAAGA	3 cut(s)	482, 546, 553
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	2 cut(s)	178, 387
MlyI	GAGTC	3 cut(s)	380, 648, 701
MnlI	CCTC	6 cut(s)	114, 265, 372, 474, 526, 627
MroI	TCCGGA	1 cut(s)	630
MseI	TTAA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	654
MspI	CCGG	1 cut(s)	631
MvnI	CGCG	2 cut(s)	222, 654
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	2 cut(s)	16, 472
NlaIII	CATG	3 cut(s)	241, 497, 646
NlaIV	GGNNCC	3 cut(s)	151, 424, 524
NmuCI	GTSAC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	686
PkrI	GCNGC	3 cut(s)	232, 286, 406
PleI	GAGTC	3 cut(s)	379, 647, 701
PpsI	GAGTC	3 cut(s)	379, 647, 701
PspN4I	GGNNCC	3 cut(s)	151, 424, 524
PspPI	GGNCC	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SacII	CCGCGG	1 cut(s)	655
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	3 cut(s)	231, 285, 405
Sau3AI	GATC	2 cut(s)	16, 472
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	3 cut(s)	380, 648, 701
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	9 cut(s)	10, 33, 188, 276, 298, 369, 456, 537, 675
SfaNI	GCATC	2 cut(s)	252, 391
Sfr303I	CCGCGG	1 cut(s)	655
SgrBI	CCGCGG	1 cut(s)	655
SinI	GGWCC	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
Sse9I	AATT	2 cut(s)	178, 387
SsiI	CCGC	3 cut(s)	222, 652, 654
SspI	AATATT	2 cut(s)	196, 483
SspMI	CTAG	3 cut(s)	327, 368, 724
TaaI	ACNGT	1 cut(s)	571
TaqI	TCGA	1 cut(s)	140
TasI	AATT	2 cut(s)	178, 387
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	3 cut(s)	424, 433, 519
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	3 cut(s)	230, 284, 404
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	2 cut(s)	695, 699
TspGWI	ACGGA	1 cut(s)	513
TspRI	CASTG	3 cut(s)	424, 433, 519
VpaK11BI	GGWCC	1 cut(s)	522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	374
XspI	CTAG	3 cut(s)	327, 368, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.