Rmu_sc0002979.1_g000002

Denticleless protein homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002979.1
Physical Location & Seq
Reverse (-)
5467 .. 9150
3684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002979.1_g000002.1.cds

Sequence Viewer

Length: 1290 bp
atggagacctcaaatccccggtcgttcttccaaggcatcagatccagagagctacacggatcccgagttccgaagcggtcctacatcgattgcctggcttcggatttctccgaaattggagccattgcagccgagcacaacggacctccgatggccatttcgttcggcaagaccagtagaaactctcacatcgtcgccatgtctgatgaggatgggtacctgagcttgttcgatactcgtcgcaagttctcggcatctgcatctcaccgggaaaatgcagatagaaccaaggtttacgattgggttgtgcatcaaaatgccgtgtttgacatctgttggataaaggatgatactcagattgtgacagcttctggtgatcaaactgtcaaggtatgggatattcaggaaaagaaatgtactgcagttctggtggggcacactggaagtgtgaagtctttgagtcctcatccgactaatcctgagattatcgtctccggttcaagagatggctcctttgctctctgggatatgagatgtaattcaacatccaaaaatacgcttgcggagctctgcatatgtgttgtcaagttctgggacactagaagtttgaaaagtatagtcacacagacatgtcctcatatggagtcaaatgagaagctagaaaagggtcctatgcaatccttctctggaggccggattgaatctttttttgtaaagtcggctattagccctgatgctgctcacatactcagtggttctagtgatggaaacgcctacatttggcaggtaaacaagcctcaagaagatccagtaatattgaaaagccatgacggagaagttacagcagttgattggtcccattttgaggttgggaagatagcaacttcttcagatgattttacggttcgcatctggaactctgagaatcgttactgcccaagcacaccatcaccatctgcaattcgaagaagaataatggcaatcccaggtgcagaatgtagaaggcttctgatgaatgaatcaatgcatatctcaaaggattccagaaattcctgtcccttggatgaaggactagatgaaagtaactcacttcatccaattaaaatgcctaaaatctgtactcctgaatcacagaagaagcaatccaagttagattctgacatgagtgaaatgtttgaaaagacccctgaagctacattgaagagcccctcttctgttctgaaccctccctcctctctaaaaaggaaaactatccgtgattactttgcagcacctactctgaacttgtag

Protein Analysis

429

Amino Acids

47.74

Weight (kDa)

6.89

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 775
Acc65I GGTACC 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 216
AciI CCGC 2 cut(s) 76, 563
AclWI GGATC 4 cut(s) 36, 54, 67, 800
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 1048
AcuI CTGAAG 2 cut(s) 873, 1209
AfaI GTAC 3 cut(s) 218, 418, 1120
AfiI CCNNNNNNNGG 3 cut(s) 100, 780, 865
AflIII ACRYGT 1 cut(s) 629
AgsI TTSAA 7 cut(s) 501, 543, 610, 701, 820, 1178, 1201
AjnI CCWGG 2 cut(s) 93, 985
AloI GAACNNNNNNTCC 4 cut(s) 51, 83, 1214, 1246
AluBI AGCT 6 cut(s) 52, 225, 368, 568, 658, 1193
AluI AGCT 6 cut(s) 52, 225, 368, 568, 658, 1193
Alw21I GWGCWC 2 cut(s) 138, 570
Alw26I GTCTC 1 cut(s) 496
AlwI GGATC 4 cut(s) 36, 54, 67, 800
AlwNI CAGNNNCTG 1 cut(s) 371
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 2 cut(s) 153, 691
ApeKI GCWGC 3 cut(s) 128, 737, 1268
ApoI RAATTY 1 cut(s) 1048
ArsI GACNNNNNNTTYG 1 cut(s) 37
Asp718I GGTACC 1 cut(s) 216
AspS9I GGNCC 4 cut(s) 78, 143, 668, 855
AsuC2I CCSGG 2 cut(s) 19, 269
AsuHPI GGTGA 3 cut(s) 257, 386, 942
AsuII TTCGAA 1 cut(s) 964
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 4 cut(s) 78, 143, 668, 855
BaeGI GKGCMC 1 cut(s) 438
BalI TGGCCA 1 cut(s) 155
BamHI GGATCC 1 cut(s) 59
BanI GGYRCC 1 cut(s) 216
BanII GRGCYC 2 cut(s) 570, 1208
BarI GAAGNNNNNNTAC 2 cut(s) 65, 97
Bbv12I GWGCWC 2 cut(s) 138, 570
BbvI GCAGC 3 cut(s) 140, 724, 1280
BccI CCATC 6 cut(s) 145, 206, 500, 758, 955, 961
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 2 cut(s) 95, 987
BclI TGATCA 1 cut(s) 376
BcnI CCSGG 2 cut(s) 19, 269
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 4 cut(s) 600, 659, 759, 1073
BfmI CTRYAG 1 cut(s) 420
BfuAI ACCTGC 1 cut(s) 775
BisI GCNGC 3 cut(s) 129, 738, 1269
BlsI GCNGC 3 cut(s) 130, 739, 1270
Bme1390I CCNGG 4 cut(s) 19, 95, 269, 987
Bme18I GGWCC 4 cut(s) 78, 143, 668, 855
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 4 cut(s) 78, 143, 668, 855
BmiI GGNNCC 6 cut(s) 61, 121, 218, 511, 669, 857
BmrFI CCNGG 4 cut(s) 19, 95, 269, 987
BmsI GCATC 6 cut(s) 45, 263, 269, 319, 724, 918
BpmI CTGGAG 1 cut(s) 708
Bpu10I CCTNAGC 1 cut(s) 221
Bpu14I TTCGAA 1 cut(s) 964
BpuEI CTTGAG 1 cut(s) 783
BpuMI CCSGG 2 cut(s) 19, 269
Bsa29I ATCGAT 1 cut(s) 87
BsaJI CCNNGG 5 cut(s) 17, 31, 288, 985, 1059
BsaWI WCCGGW 1 cut(s) 494
BsaXI ACNNNNNCTCC 2 cut(s) 1214, 1244
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 780, 865
Bse1I ACTGG 3 cut(s) 174, 445, 809
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 2 cut(s) 95, 987
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 5 cut(s) 17, 31, 288, 985, 1059
BseGI GGATG 6 cut(s) 217, 352, 466, 545, 1069, 1093
BseLI CCNNNNNNNGG 3 cut(s) 100, 780, 865
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 5 cut(s) 212, 368, 471, 763, 912
BseNI ACTGG 3 cut(s) 174, 445, 809
BseRI GAGGAG 1 cut(s) 1222
BseSI GKGCMC 1 cut(s) 438
BseXI GCAGC 3 cut(s) 140, 724, 1280
BsgI GTGCAG 1 cut(s) 1011
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 2 cut(s) 155, 693
BshNI GGYRCC 1 cut(s) 216
BshVI ATCGAT 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 138, 570
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 4 cut(s) 19, 268, 495, 694
BslFI GGGAC 3 cut(s) 608, 841, 1041
BslI CCNNNNNNNGG 3 cut(s) 100, 780, 865
BsmAI GTCTC 1 cut(s) 496
BsmBI CGTCTC 1 cut(s) 496
BsmFI GGGAC 3 cut(s) 608, 841, 1041
BsnI GGCC 2 cut(s) 155, 693
BsoBI CYCGRG 1 cut(s) 63
Bsp119I TTCGAA 1 cut(s) 964
Bsp1286I GDGCHC 4 cut(s) 138, 438, 570, 1208
Bsp143I GATC 4 cut(s) 41, 59, 376, 805
BspACI CCGC 2 cut(s) 76, 563
BspANI GGCC 2 cut(s) 155, 693
BspCNI CTCAG 5 cut(s) 213, 367, 472, 762, 913
BspDI ATCGAT 1 cut(s) 87
BspLI GGNNCC 6 cut(s) 61, 121, 218, 511, 669, 857
BspMAI CTGCAG 1 cut(s) 424
BspMI ACCTGC 1 cut(s) 775
BspPI GGATC 4 cut(s) 36, 54, 67, 800
BspQI GCTCTTC 1 cut(s) 1196
BspT104I TTCGAA 1 cut(s) 964
BspT107I GGYRCC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 3 cut(s) 174, 445, 809
BssECI CCNNGG 5 cut(s) 17, 31, 288, 985, 1059
BssMI GATC 4 cut(s) 41, 59, 376, 805
BssT1I CCWWGG 3 cut(s) 31, 288, 1059
Bst2UI CCWGG 2 cut(s) 95, 987
Bst4CI ACNGT 2 cut(s) 385, 904
Bst6I CTCTTC 2 cut(s) 1196, 1216
BstBI TTCGAA 1 cut(s) 964
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 5 cut(s) 221, 354, 480, 749, 921
BstF5I GGATG 6 cut(s) 217, 352, 466, 545, 1069, 1093
BstKTI GATC 4 cut(s) 44, 62, 379, 808
BstMAI GTCTC 1 cut(s) 496
BstMBI GATC 4 cut(s) 41, 59, 376, 805
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 2 cut(s) 128, 565
BstNI CCWGG 2 cut(s) 95, 987
BstNSI RCATGY 1 cut(s) 633
BstSCI CCNGG 4 cut(s) 17, 93, 267, 985
BstSFI CTRYAG 1 cut(s) 420
BstSLI GKGCMC 1 cut(s) 438
BstV1I GCAGC 3 cut(s) 140, 724, 1280
BstX2I RGATCY 3 cut(s) 41, 59, 805
BstYI RGATCY 3 cut(s) 41, 59, 805
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 2 cut(s) 155, 693
BsuTUI ATCGAT 1 cut(s) 87
BtsCI GGATG 6 cut(s) 217, 352, 466, 545, 1069, 1093
BtsIMutI CAGTG 2 cut(s) 438, 757
BveI ACCTGC 1 cut(s) 775
Cac8I GCNNGC 1 cut(s) 561
CaiI CAGNNNCTG 1 cut(s) 371
Cfr13I GGNCC 4 cut(s) 78, 143, 668, 855
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 3 cut(s) 217, 417, 1119
CviAII CATG 4 cut(s) 199, 630, 827, 1162
CviQI GTAC 3 cut(s) 217, 417, 1119
DdeI CTNAG 5 cut(s) 221, 354, 480, 749, 921
DpnI GATC 4 cut(s) 43, 61, 378, 807
DpnII GATC 4 cut(s) 41, 59, 376, 805
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 2 cut(s) 1196, 1216
EarI CTCTTC 2 cut(s) 1196, 1216
Ecl136II GAGCTC 1 cut(s) 568
Eco130I CCWWGG 3 cut(s) 31, 288, 1059
Eco24I GRGCYC 2 cut(s) 570, 1208
Eco47I GGWCC 4 cut(s) 78, 143, 668, 855
Eco53kI GAGCTC 1 cut(s) 568
Eco57I CTGAAG 2 cut(s) 873, 1209
Eco88I CYCGRG 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 568
EcoO109I RGGNCCY 1 cut(s) 668
EcoRII CCWGG 2 cut(s) 93, 985
EcoT14I CCWWGG 3 cut(s) 31, 288, 1059
EcoT22I ATGCAT 1 cut(s) 1029
EcoT38I GRGCYC 2 cut(s) 570, 1208
ErhI CCWWGG 3 cut(s) 31, 288, 1059
Esp3I CGTCTC 1 cut(s) 496
FaeI CATG 4 cut(s) 202, 633, 830, 1165
FaqI GGGAC 3 cut(s) 608, 841, 1041
FatI CATG 4 cut(s) 198, 629, 826, 1161
FauNDI CATATG 2 cut(s) 575, 639
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 3 cut(s) 129, 738, 1269
FokI GGATG 6 cut(s) 224, 359, 453, 532, 1076, 1080
FriOI GRGCYC 2 cut(s) 570, 1208
Fsp4HI GCNGC 3 cut(s) 129, 738, 1269
FspBI CTAG 4 cut(s) 600, 659, 759, 1073
GluI GCNGC 3 cut(s) 129, 738, 1269
GsuI CTGGAG 1 cut(s) 708
HaeIII GGCC 2 cut(s) 155, 693
HapII CCGG 4 cut(s) 19, 268, 495, 694
Hin1II CATG 4 cut(s) 202, 633, 830, 1165
HinfI GANTC 8 cut(s) 460, 644, 701, 925, 1019, 1040, 1127, 1154
HpaII CCGG 4 cut(s) 19, 268, 495, 694
HphI GGTGA 3 cut(s) 257, 386, 942
Hpy166II GTNNAC 2 cut(s) 295, 790
Hpy8I GTNNAC 2 cut(s) 295, 790
Hpy99I CGWCG 2 cut(s) 197, 243
HpyAV CCTTC 3 cut(s) 691, 996, 1061
HpyCH4III ACNGT 2 cut(s) 385, 904
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 565
HpyF3I CTNAG 5 cut(s) 221, 354, 480, 749, 921
Hsp92II CATG 4 cut(s) 202, 633, 830, 1165
KpnI GGTACC 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 4 cut(s) 41, 59, 376, 805
LguI GCTCTTC 1 cut(s) 1196
LmnI GCTCC 3 cut(s) 119, 515, 565
Lsp1109I GCAGC 3 cut(s) 140, 724, 1280
LweI GCATC 6 cut(s) 45, 263, 269, 319, 724, 918
MaeI CTAG 4 cut(s) 600, 659, 759, 1073
MaeIII GTNAC 5 cut(s) 361, 619, 838, 929, 1082
MalI GATC 4 cut(s) 43, 61, 378, 807
MboI GATC 4 cut(s) 41, 59, 376, 805
MboII GAAGA 9 cut(s) 19, 815, 879, 886, 978, 981, 1147, 1203, 1213
MflI RGATCY 3 cut(s) 41, 59, 805
MhlI GDGCHC 4 cut(s) 138, 438, 570, 1208
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 5 cut(s) 114, 538, 960, 1048, 1098
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 2 cut(s) 469, 653
MmeI TCCRAC 2 cut(s) 317, 494
Mox20I TGGCCA 1 cut(s) 155
Mph1103I ATGCAT 1 cut(s) 1029
MscI TGGCCA 1 cut(s) 155
MseI TTAA 1 cut(s) 1101
MslI CAYNNNNRTG 2 cut(s) 315, 628
Msp20I TGGCCA 1 cut(s) 155
MspI CCGG 4 cut(s) 19, 268, 495, 694
MspR9I CCNGG 4 cut(s) 19, 95, 269, 987
MvaI CCWGG 2 cut(s) 95, 987
MwoI GCNNNNNNNGC 2 cut(s) 128, 565
NciI CCSGG 2 cut(s) 19, 269
NdeI CATATG 2 cut(s) 575, 639
NdeII GATC 4 cut(s) 41, 59, 376, 805
NlaIII CATG 4 cut(s) 202, 633, 830, 1165
NlaIV GGNNCC 6 cut(s) 61, 121, 218, 511, 669, 857
NmeAIII GCCGAG 2 cut(s) 157, 230
NmuCI GTSAC 2 cut(s) 361, 619
NsiI ATGCAT 1 cut(s) 1029
NspI RCATGY 1 cut(s) 633
NspV TTCGAA 1 cut(s) 964
PciI ACATGT 1 cut(s) 629
PciSI GCTCTTC 1 cut(s) 1196
PfeI GAWTC 6 cut(s) 701, 925, 1019, 1040, 1127, 1154
PkrI GCNGC 3 cut(s) 130, 739, 1270
PleI GAGTC 2 cut(s) 468, 652
PpsI GAGTC 2 cut(s) 468, 652
PpuMI RGGWCCY 1 cut(s) 668
PscI ACATGT 1 cut(s) 629
Psp124BI GAGCTC 1 cut(s) 570
Psp5II RGGWCCY 1 cut(s) 668
Psp6I CCWGG 2 cut(s) 93, 985
PspGI CCWGG 2 cut(s) 93, 985
PspN4I GGNNCC 6 cut(s) 61, 121, 218, 511, 669, 857
PspPI GGNCC 4 cut(s) 78, 143, 668, 855
PspPPI RGGWCCY 1 cut(s) 668
PstI CTGCAG 1 cut(s) 424
PstNI CAGNNNCTG 1 cut(s) 371
PsuI RGATCY 3 cut(s) 41, 59, 805
RsaI GTAC 3 cut(s) 218, 418, 1120
RsaNI GTAC 3 cut(s) 217, 417, 1119
RseI CAYNNNNRTG 2 cut(s) 315, 628
SacI GAGCTC 1 cut(s) 570
SapI GCTCTTC 1 cut(s) 1196
SaqAI TTAA 1 cut(s) 1101
SatI GCNGC 3 cut(s) 129, 738, 1269
Sau3AI GATC 4 cut(s) 41, 59, 376, 805
Sau96I GGNCC 4 cut(s) 78, 143, 668, 855
SchI GAGTC 2 cut(s) 469, 653
ScrFI CCNGG 4 cut(s) 19, 95, 269, 987
SduI GDGCHC 4 cut(s) 138, 438, 570, 1208
SfaNI GCATC 6 cut(s) 45, 263, 269, 319, 724, 918
SfcI CTRYAG 1 cut(s) 420
SfuI TTCGAA 1 cut(s) 964
SinI GGWCC 4 cut(s) 78, 143, 668, 855
SmiMI CAYNNNNRTG 2 cut(s) 315, 628
SmlI CTYRAG 1 cut(s) 798
SmoI CTYRAG 1 cut(s) 798
Sse9I AATT 5 cut(s) 114, 538, 960, 1048, 1098
SsiI CCGC 2 cut(s) 76, 563
SspI AATATT 1 cut(s) 816
SspMI CTAG 4 cut(s) 600, 659, 759, 1073
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 4 cut(s) 17, 93, 267, 985
StyI CCWWGG 3 cut(s) 31, 288, 1059
TaaI ACNGT 2 cut(s) 385, 904
TaqI TCGA 3 cut(s) 87, 231, 964
TasI AATT 5 cut(s) 114, 538, 960, 1048, 1098
TatI WGTACW 2 cut(s) 416, 1118
TfiI GAWTC 6 cut(s) 701, 925, 1019, 1040, 1127, 1154
Tru1I TTAA 1 cut(s) 1101
Tru9I TTAA 1 cut(s) 1101
TscAI CASTG 2 cut(s) 445, 757
TseFI GTSAC 2 cut(s) 361, 619
TseI GCWGC 3 cut(s) 128, 737, 1268
Tsp45I GTSAC 2 cut(s) 361, 619
TspDTI ATGAA 5 cut(s) 1028, 1032, 1080, 1082, 1092
TspGWI ACGGA 4 cut(s) 72, 156, 846, 1244
TspRI CASTG 2 cut(s) 445, 757
VpaK11BI GGWCC 4 cut(s) 78, 143, 668, 855
XapI RAATTY 1 cut(s) 1048
XceI RCATGY 1 cut(s) 633
XcmI CCANNNNNNNNNTGG 1 cut(s) 866
XspI CTAG 4 cut(s) 600, 659, 759, 1073
Zsp2I ATGCAT 1 cut(s) 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.