Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005798

Physical Location & Seq

Genomic Coordinates Forward (+)

87057628 .. 87058595

Gene Structure 968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG653700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGACTCTATTGGCCATCTCAATCCAGGTAAACAAGCCTGAAGAAGATCCAGTAATATTGAAAAGCCATGACGGAGAAGTTACAGCAGTTGATTGGTCCCATTTTGAGGTTGGGAAGATAGCAACTTCTTCAGATGATTTTACGGTTCGCATCTGGAACTCTGAGAATCGTTACTGCCCAAGCACACCATCACCATCTGCAATTCGAAGAAGAATAATGGCAATCCCAGGTGCAGAATGTAGAAGGCTTCTGATGAATGAATCAATGCATATCTCAAAGGATTCCAGAAATTCCTGTCCCTTGGATGAAGGACTAGATGAAAGTAACTCACTTCATCCAATTAAAATGCCTAAAATCTGTACTCCTGAATCACAGAAGAAGCAATCCAAGTTAGATTCTGACATGAGTGAAATGTTTGAAAAGACCCCTGAAGCTACATTGAAGAGCCCCTCTTCTGTTCTGAACCCTCCCTCCTCTCTAAAAAGGAAAACTATCCGTGATTACTTTGCAGCACCTACTCTGAACTTAAGCCGGGTGCCTCAACCCTTTTTCAGATTATTAATGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000151 GO:0000209 GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010564 GO:0010948 GO:0015630 GO:0016567 GO:0018130 GO:0019438 GO:0019538 GO:0019941 GO:0019985 GO:0023052 GO:0030163 GO:0031461 GO:0031464 GO:0031465 GO:0031570 GO:0031572 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0071897 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080008 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901987 GO:1901988 GO:1902494 GO:1902749 GO:1902750 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

189

Amino Acids

21.25

Weight (kDa)

7.69

Isoelectric Point (pI)

74.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27640 AT3G27640
fragaria_vesca	FvH4_6g51280 FvH4_6g51280 FvH4_6g51280 FvH4_6g51280
malus_domestica	MD09G1027800.v1.1 MD17G1027700.v1.1 MD17G1028200.v1.1
prunus_persica	Prupe.3G290400_v2.0.a1 Prupe.3G291000_v2.0.a1
pyrus_communis	pycom111g02180
rosa_chinensis	RchiOBHm_Chr2g0172901
rosa_laevigata	RLG00000022140
rosa_multiflora	Rmu_co8216202.1_g000001 Rmu_sc0002979.1_g000002 Rmu_sc0013380.1_g000001 Rmu_sc0015618.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079450
rosa_rugosa	Rorug02G0563200 Rorug02G0563400
rosa_samantha	Rh2AG640100 Rh2AG640200 Rh2BG653600 Rh2BG653700 Rh2CG619200 Rh2DG667200
rosa_wichuraiana	Rw2G052840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	535
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	3 cut(s)	60, 114, 450
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflII	CTTAAG	1 cut(s)	526
AgsI	TTSAA	3 cut(s)	61, 419, 442
AjnI	CCWGG	2 cut(s)	24, 226
AloI	GAACNNNNNNTCC	2 cut(s)	455, 487
AluBI	AGCT	1 cut(s)	434
AluI	AGCT	1 cut(s)	434
AlwI	GGATC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	1 cut(s)	289
AseI	ATTAAT	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	96
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	183
AsuII	TTCGAA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	96
BalI	TGGCCA	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	449
BbvI	GCAGC	1 cut(s)	521
BccI	CCATC	3 cut(s)	23, 196, 202
BciT130I	CCWGG	2 cut(s)	26, 228
BcnI	CCSGG	1 cut(s)	533
BfaI	CTAG	1 cut(s)	314
BfrI	CTTAAG	1 cut(s)	526
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	3 cut(s)	26, 228, 533
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	2 cut(s)	98, 537
BmrFI	CCNGG	3 cut(s)	26, 228, 533
BmsI	GCATC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	226, 300
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	50
BseBI	CCWGG	2 cut(s)	26, 228
BseDI	CCNNGG	2 cut(s)	226, 300
BseGI	GGATG	2 cut(s)	310, 334
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	463
BseXI	GCAGC	1 cut(s)	521
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	535
BsiSI	CCGG	1 cut(s)	532
BslFI	GGGAC	2 cut(s)	82, 282
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmFI	GGGAC	2 cut(s)	82, 282
BsnI	GGCC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp143I	GATC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	98, 537
BspPI	GGATC	1 cut(s)	41
BspQI	GCTCTTC	1 cut(s)	437
BspT104I	TTCGAA	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	535
BspTI	CTTAAG	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	226, 300
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	26, 228
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	2 cut(s)	437, 457
BstAFI	CTTAAG	1 cut(s)	526
BstBI	TTCGAA	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	310, 334
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstNI	CCWGG	2 cut(s)	26, 228
BstSCI	CCNGG	3 cut(s)	24, 226, 531
BstV1I	GCAGC	1 cut(s)	521
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	310, 334
Cfr13I	GGNCC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	2 cut(s)	68, 403
CviJI	RGCY	7 cut(s)	14, 37, 66, 247, 434, 447, 531
CviKI_1	RGCY	7 cut(s)	14, 37, 66, 247, 434, 447, 531
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	437, 457
EarI	CTCTTC	2 cut(s)	437, 457
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	96
Eco57I	CTGAAG	3 cut(s)	60, 114, 450
EcoRII	CCWGG	2 cut(s)	24, 226
EcoT14I	CCWWGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	71, 406
FaiI	YATR	3 cut(s)	69, 270, 404
FaqI	GGGAC	2 cut(s)	82, 282
FatI	CATG	2 cut(s)	67, 402
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	2 cut(s)	317, 321
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	1 cut(s)	510
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	532
Hin1II	CATG	2 cut(s)	71, 406
HinfI	GANTC	6 cut(s)	4, 166, 260, 281, 368, 395
HpaII	CCGG	1 cut(s)	532
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	7 cut(s)	133, 163, 252, 400, 462, 522, 554
Hpy188III	TCNNGA	3 cut(s)	154, 285, 365
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	237, 302
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	200, 233, 268, 509
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	71, 406
Kzo9I	GATC	1 cut(s)	46
LguI	GCTCTTC	1 cut(s)	437
Lsp1109I	GCAGC	1 cut(s)	521
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	3 cut(s)	79, 170, 323
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	9 cut(s)	53, 56, 120, 127, 219, 222, 388, 444, 454
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	449
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	3 cut(s)	201, 289, 339
MluNI	TGGCCA	1 cut(s)	14
MnlI	CCTC	6 cut(s)	100, 460, 477, 481, 484, 549
Mox20I	TGGCCA	1 cut(s)	14
Mph1103I	ATGCAT	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	3 cut(s)	342, 527, 560
Msp20I	TGGCCA	1 cut(s)	14
MspCI	CTTAAG	1 cut(s)	526
MspI	CCGG	1 cut(s)	532
MspR9I	CCNGG	3 cut(s)	26, 228, 533
MvaI	CCWGG	2 cut(s)	26, 228
NciI	CCSGG	1 cut(s)	533
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	2 cut(s)	71, 406
NlaIV	GGNNCC	2 cut(s)	98, 537
NsiI	ATGCAT	1 cut(s)	270
NspV	TTCGAA	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	437
PfeI	GAWTC	5 cut(s)	166, 260, 281, 368, 395
PkrI	GCNGC	1 cut(s)	511
PshBI	ATTAAT	1 cut(s)	560
Psp6I	CCWGG	2 cut(s)	24, 226
PspGI	CCWGG	2 cut(s)	24, 226
PspN4I	GGNNCC	2 cut(s)	98, 537
PspPI	GGNCC	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	437
SaqAI	TTAA	3 cut(s)	342, 527, 560
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	1 cut(s)	96
ScrFI	CCNGG	3 cut(s)	26, 228, 533
SduI	GDGCHC	1 cut(s)	449
SetI	ASST	5 cut(s)	30, 111, 232, 436, 517
SfaNI	GCATC	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	3 cut(s)	201, 289, 339
SspI	AATATT	1 cut(s)	57
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	3 cut(s)	24, 226, 531
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	1 cut(s)	205
TasI	AATT	3 cut(s)	201, 289, 339
TatI	WGTACW	1 cut(s)	359
TfiI	GAWTC	5 cut(s)	166, 260, 281, 368, 395
Tru1I	TTAA	3 cut(s)	342, 527, 560
Tru9I	TTAA	3 cut(s)	342, 527, 560
TseI	GCWGC	1 cut(s)	509
TspDTI	ATGAA	5 cut(s)	269, 273, 321, 323, 333
TspGWI	ACGGA	2 cut(s)	87, 485
Vha464I	CTTAAG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	96
VspI	ATTAAT	1 cut(s)	560
XapI	RAATTY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.