Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013380.1

Orthogroup ID

OG0005798

Physical Location & Seq

Genomic Coordinates Forward (+)

256 .. 2644

Gene Structure 2389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013380.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggcaatcccaggtgcagaatgtagaaggcttctgatgaatgaatcaatgcatatctcaaaggattccagaaattcctgtcccttggatgaaggactagatgaaagtagctcacttcatccaattaaaatgcctaaaatctgtactcctgaatcacagaagaagcaatccaagttagattctgacatgagtgaaatgtttgaaaagacccctgaagctacattgaagagcccctcttctgttctgaaccctccctcctctctaaaaaggaaaactatccgtgattactttgcagcacctactctgaacttaggtgatcttgagccgagccccaaaatgaagtcaaggtatgggttcacaagaaaacatcagaaggcaagtttcttactataccatctgccaaacgggatgtggtcaagttccaagcagatcgaaaagagtgtgaaacttctgggatttgctgatgctcatcaaaacataaggcgacgctattacatgaaagatgatgatattttcattcctgaaccggggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0000151 GO:0000209 GO:0000731 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010564 GO:0010948 GO:0015630 GO:0016567 GO:0018130 GO:0019438 GO:0019538 GO:0019941 GO:0019985 GO:0023052 GO:0030163 GO:0031461 GO:0031464 GO:0031465 GO:0031570 GO:0031572 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0071897 GO:0072395 GO:0072401 GO:0072422 GO:0072425 GO:0080008 GO:0090304 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901987 GO:1901988 GO:1902494 GO:1902749 GO:1902750 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

177

Amino Acids

20.13

Weight (kDa)

9.2

Isoelectric Point (pI)

84.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27640 AT3G27640
fragaria_vesca	FvH4_6g51280 FvH4_6g51280 FvH4_6g51280 FvH4_6g51280
malus_domestica	MD09G1027800.v1.1 MD17G1027700.v1.1 MD17G1028200.v1.1
prunus_persica	Prupe.3G290400_v2.0.a1 Prupe.3G291000_v2.0.a1
pyrus_communis	pycom111g02180
rosa_chinensis	RchiOBHm_Chr2g0172901
rosa_laevigata	RLG00000022140
rosa_multiflora	Rmu_co8216202.1_g000001 Rmu_sc0002979.1_g000002 Rmu_sc0013380.1_g000001 Rmu_sc0015618.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079450
rosa_rugosa	Rorug02G0563200 Rorug02G0563400
rosa_samantha	Rh2AG640100 Rh2AG640200 Rh2BG653600 Rh2BG653700 Rh2CG619200 Rh2DG667200
rosa_wichuraiana	Rw2G052840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	527
AgsI	TTSAA	2 cut(s)	203, 226
AjnI	CCWGG	1 cut(s)	10
AloI	GAACNNNNNNTCC	2 cut(s)	239, 271
AluBI	AGCT	2 cut(s)	111, 218
AluI	AGCT	2 cut(s)	111, 218
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	233, 332
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	402
BciT130I	CCWGG	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	528
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	2 cut(s)	12, 528
BmrFI	CCNGG	2 cut(s)	12, 528
BmsI	GCATC	1 cut(s)	454
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	528
BsaBI	GATNNNNATC	1 cut(s)	468
BsaJI	CCNNGG	3 cut(s)	10, 84, 527
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	10, 84, 527
BseGI	GGATG	3 cut(s)	94, 118, 414
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseRI	GAGGAG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	66
Bsp1286I	GDGCHC	2 cut(s)	233, 332
Bsp143I	GATC	2 cut(s)	316, 429
BspQI	GCTCTTC	1 cut(s)	221
BssECI	CCNNGG	3 cut(s)	10, 84, 527
BssMI	GATC	2 cut(s)	316, 429
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	12
Bst6I	CTCTTC	2 cut(s)	221, 241
BstDEI	CTNAG	1 cut(s)	310
BstF5I	GGATG	3 cut(s)	94, 118, 414
BstKTI	GATC	2 cut(s)	319, 432
BstMBI	GATC	2 cut(s)	316, 429
BstNI	CCWGG	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	10, 526
BstV1I	GCAGC	1 cut(s)	305
BtsCI	GGATG	3 cut(s)	94, 118, 414
CseI	GACGC	1 cut(s)	495
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	2 cut(s)	187, 496
CviJI	RGCY	6 cut(s)	31, 111, 218, 231, 325, 330
CviKI_1	RGCY	6 cut(s)	31, 111, 218, 231, 325, 330
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	2 cut(s)	318, 431
DpnII	GATC	2 cut(s)	316, 429
Eam1104I	CTCTTC	2 cut(s)	221, 241
EarI	CTCTTC	2 cut(s)	221, 241
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	2 cut(s)	233, 332
Eco57I	CTGAAG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	54
EcoT38I	GRGCYC	2 cut(s)	233, 332
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	190, 499
FaiI	YATR	6 cut(s)	54, 188, 351, 391, 479, 497
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	2 cut(s)	186, 495
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	3 cut(s)	101, 105, 421
FriOI	GRGCYC	2 cut(s)	233, 332
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	1 cut(s)	294
HapII	CCGG	1 cut(s)	527
HgaI	GACGC	1 cut(s)	495
Hin1II	CATG	2 cut(s)	190, 499
HinfI	GANTC	4 cut(s)	44, 65, 152, 179
HpaII	CCGG	1 cut(s)	527
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	5 cut(s)	36, 184, 246, 306, 372
Hpy188III	TCNNGA	4 cut(s)	69, 149, 320, 521
Hpy8I	GTNNAC	1 cut(s)	357
Hpy99I	CGWCG	1 cut(s)	489
HpyAV	CCTTC	3 cut(s)	21, 86, 367
HpyCH4V	TGCA	3 cut(s)	17, 52, 293
HpyF3I	CTNAG	1 cut(s)	310
Hsp92II	CATG	2 cut(s)	190, 499
Kzo9I	GATC	2 cut(s)	316, 429
LguI	GCTCTTC	1 cut(s)	221
LpnPI	CCDG	6 cut(s)	24, 82, 91, 162, 225, 437
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	1 cut(s)	98
MalI	GATC	2 cut(s)	318, 431
MboI	GATC	2 cut(s)	316, 429
MboII	GAAGA	3 cut(s)	172, 228, 238
MhlI	GDGCHC	2 cut(s)	233, 332
MluCI	AATT	2 cut(s)	73, 123
MnlI	CCTC	4 cut(s)	244, 261, 265, 268
Mph1103I	ATGCAT	1 cut(s)	54
MseI	TTAA	1 cut(s)	126
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	2 cut(s)	12, 528
MvaI	CCWGG	1 cut(s)	12
NciI	CCSGG	1 cut(s)	528
NdeII	GATC	2 cut(s)	316, 429
NlaIII	CATG	2 cut(s)	190, 499
NmeAIII	GCCGAG	1 cut(s)	351
NsiI	ATGCAT	1 cut(s)	54
PciSI	GCTCTTC	1 cut(s)	221
PfeI	GAWTC	4 cut(s)	44, 65, 152, 179
PkrI	GCNGC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	2 cut(s)	316, 429
ScrFI	CCNGG	2 cut(s)	12, 528
SduI	GDGCHC	2 cut(s)	233, 332
SetI	ASST	6 cut(s)	16, 113, 220, 301, 316, 350
SfaNI	GCATC	1 cut(s)	454
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	73, 123
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	10, 526
StyI	CCWWGG	1 cut(s)	84
TaqI	TCGA	1 cut(s)	432
TasI	AATT	2 cut(s)	73, 123
TatI	WGTACW	1 cut(s)	143
TfiI	GAWTC	4 cut(s)	44, 65, 152, 179
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	8 cut(s)	53, 57, 105, 107, 117, 353, 505, 512
TspGWI	ACGGA	1 cut(s)	269
XapI	RAATTY	1 cut(s)	73
XcmI	CCANNNNNNNNNTGG	1 cut(s)	408
XspI	CTAG	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.