Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004726

Physical Location & Seq

Genomic Coordinates Reverse (-)

4367901 .. 4368482

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1063700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTGCCTCTGCGTTGCGTATGAAAATCTGCAGGCGTCGCAGGAAGAGTTCTTTAAGAAGCGAAACGACGACGATGTCGAATCCGAGAGTTTGAAGGAGAGCGACAGAGCTGAGCGTGAACTAGAGGAAGCAATCGAGGAGGGTTTGAGGATTCAGGACCTTCATATTGAAGATGGGTCGGGTGATTTGGACCCGGATAGTGAATTGGGTTGTTCGACAATCAAGAGAAGAAGGGACAAGTTGTTGGAAGAGGCGAGGAAGAGTGTGCCAGAGCGTGGGAAGGTGATGCATTTGGTTCAGGCATTTGAGAAGCTGTTTTCGATTCCGAGCTCGAAGGATTCGGATGAGCAGAATGGGGAGGAGGAGGAGGCGGCGGAAGAGATTGGGAAGAAGGCGGAGAAGTGGACATTGCCTGGATTGCAGCCTCCTCCGAAGACGCCGGAAACACAGGTTTCATCGTCATCGTTTTTCCCGTCTGATTTGTGCTTGACGTTGGAGAATCTCGGTCTGGATCCGCGGCCTTCAGTCTCTTCTTCTTGGGATGGAAGTCTGGGAAGGTTAGCAATTATACTTACTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

194

Amino Acids

21.6

Weight (kDa)

4.51

Isoelectric Point (pI)

71.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01015 AT5G15510 AT5G15510 AT5G15510 AT5G15510
fragaria_vesca	FvH4_6g47160 FvH4_6g47160
malus_domestica	MD00G1005800.v1.1 MD00G1006000.v1.1 MD09G1063100.v1.1 MD09G1063500.v1.1 MD09G1063700.v1.1 MD17G1057000.v1.1
prunus_persica	Prupe.3G257100_v2.0.a1 Prupe.3G257100_v2.0.a1 Prupe.3G257100_v2.0.a1
pyrus_communis	pycom111g05340 pycom17g05710
rosa_chinensis	RchiOBHm_Chr2g0166211
rosa_laevigata	RLG00000021595
rosa_multiflora	Rmu_co8521115.1_g000001 Rmu_sc0020961.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085110 Rroxscaffold_7G00206840
rosa_rugosa	Rorug02G0521000 Rorug02G0521100
rosa_samantha	Rh2AG587200 Rh2BG599000 Rh2CG569500 Rh2DG608800
rosa_wichuraiana	Rw2G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccB7I	CCANNNNNTGG	1 cut(s)	275
AccII	CGCG	1 cut(s)	517
AciI	CCGC	5 cut(s)	371, 374, 395, 515, 517
AclWI	GGATC	2 cut(s)	506, 519
AcuI	CTGAAG	1 cut(s)	507
AcyI	GRCGYC	2 cut(s)	35, 437
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	94, 170
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	3 cut(s)	110, 313, 330
AluI	AGCT	3 cut(s)	110, 313, 330
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	2 cut(s)	506, 519
AoxI	GGCC	1 cut(s)	518
ApeKI	GCWGC	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	157, 190
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	194, 295
AvaII	GGWCC	2 cut(s)	157, 190
BamHI	GGATCC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	2 cut(s)	167, 536
BciT130I	CCWGG	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	29
BisI	GCNGC	3 cut(s)	372, 422, 518
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	3 cut(s)	373, 423, 519
Bme1390I	CCNGG	2 cut(s)	194, 414
Bme18I	GGWCC	2 cut(s)	157, 190
BmgT120I	GGNCC	2 cut(s)	157, 190
BmiI	GGNNCC	2 cut(s)	192, 513
BmrFI	CCNGG	2 cut(s)	194, 414
BmsI	GCATC	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	440
Bpu1102I	GCTNAGC	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	194
BsaHI	GRCGYC	2 cut(s)	35, 437
BsaJI	CCNNGG	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	515
BseGI	GGATG	2 cut(s)	349, 547
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	407
BseMII	CTCAG	1 cut(s)	102
BseRI	GAGGAG	5 cut(s)	152, 374, 377, 380, 417
BseXI	GCAGC	1 cut(s)	433
Bsh1236I	CGCG	1 cut(s)	517
BshFI	GGCC	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	332
BsiSI	CCGG	2 cut(s)	194, 440
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	520
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	511
Bsp1720I	GCTNAGC	1 cut(s)	111
BspACI	CCGC	5 cut(s)	371, 374, 395, 515, 517
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	192, 513
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	2 cut(s)	506, 519
BsrDI	GCAATG	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	515
BssMI	GATC	1 cut(s)	511
BssNI	GRCGYC	2 cut(s)	35, 437
Bst2UI	CCWGG	1 cut(s)	414
Bst6I	CTCTTC	5 cut(s)	39, 243, 254, 372, 535
BstACI	GRCGYC	2 cut(s)	35, 437
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	111
BstDSI	CCRYGG	1 cut(s)	515
BstF5I	GGATG	2 cut(s)	349, 547
BstFNI	CGCG	1 cut(s)	517
BstKTI	GATC	1 cut(s)	514
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	1 cut(s)	511
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 418
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	2 cut(s)	192, 412
BstSFI	CTRYAG	1 cut(s)	29
BstUI	CGCG	1 cut(s)	517
BstV1I	GCAGC	1 cut(s)	433
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	520
BtgI	CCRYGG	1 cut(s)	515
BtsCI	GGATG	2 cut(s)	349, 547
Cac8I	GCNNGC	1 cut(s)	33
Cfr13I	GGNCC	2 cut(s)	157, 190
Cfr42I	CCGCGG	1 cut(s)	518
CseI	GACGC	2 cut(s)	24, 445
CviJI	RGCY	5 cut(s)	110, 313, 330, 424, 520
CviKI_1	RGCY	5 cut(s)	110, 313, 330, 424, 520
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	1 cut(s)	513
DpnII	GATC	1 cut(s)	511
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	5 cut(s)	39, 243, 254, 372, 535
EarI	CTCTTC	5 cut(s)	39, 243, 254, 372, 535
EciI	GGCGGA	2 cut(s)	389, 410
Ecl136II	GAGCTC	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	332
Eco47I	GGWCC	2 cut(s)	157, 190
Eco53kI	GAGCTC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	332
FaiI	YATR	3 cut(s)	21, 165, 569
FaqI	GGGAC	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	372, 422, 518
FokI	GGATG	2 cut(s)	356, 554
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	3 cut(s)	372, 422, 518
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	3 cut(s)	372, 422, 518
HaeIII	GGCC	1 cut(s)	520
HapII	CCGG	2 cut(s)	194, 440
HgaI	GACGC	2 cut(s)	24, 445
Hin1I	GRCGYC	2 cut(s)	35, 437
HinfI	GANTC	5 cut(s)	80, 151, 322, 338, 499
HpaII	CCGG	2 cut(s)	194, 440
HphI	GGTGA	2 cut(s)	194, 295
Hpy166II	GTNNAC	2 cut(s)	119, 405
Hpy188I	TCNGA	5 cut(s)	85, 327, 343, 432, 478
Hpy188III	TCNNGA	3 cut(s)	155, 223, 509
Hpy8I	GTNNAC	2 cut(s)	119, 405
Hpy99I	CGWCG	3 cut(s)	40, 71, 74
HpyAV	CCTTC	8 cut(s)	88, 170, 225, 274, 328, 385, 531, 549
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	3 cut(s)	31, 289, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 418
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	491
Hsp92I	GRCGYC	2 cut(s)	35, 437
KspI	CCGCGG	1 cut(s)	518
Kzo9I	GATC	1 cut(s)	511
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	491
MalI	GATC	1 cut(s)	513
MboI	GATC	1 cut(s)	511
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	2 cut(s)	203, 564
MmeI	TCCRAC	2 cut(s)	225, 474
Mph1103I	ATGCAT	1 cut(s)	291
MseI	TTAA	2 cut(s)	54, 580
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	2 cut(s)	194, 440
MspR9I	CCNGG	2 cut(s)	194, 414
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	1 cut(s)	517
MwoI	GCNNNNNNNGC	2 cut(s)	37, 418
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	1 cut(s)	511
NlaIV	GGNNCC	2 cut(s)	192, 513
NsiI	ATGCAT	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 470
PfeI	GAWTC	5 cut(s)	80, 151, 322, 338, 499
PflFI	GACNNNGTC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	373, 423, 519
PpuMI	RGGWCCY	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	192, 513
PspPI	GGNCC	2 cut(s)	157, 190
PspPPI	RGGWCCY	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	511
PsyI	GACNNNGTC	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	332
SacII	CCGCGG	1 cut(s)	518
SaqAI	TTAA	2 cut(s)	54, 580
SatI	GCNGC	3 cut(s)	372, 422, 518
Sau3AI	GATC	1 cut(s)	511
Sau96I	GGNCC	2 cut(s)	157, 190
ScrFI	CCNGG	2 cut(s)	194, 414
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	8 cut(s)	112, 162, 285, 315, 332, 453, 494, 560
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	29
Sfr303I	CCGCGG	1 cut(s)	518
SgrBI	CCGCGG	1 cut(s)	518
SinI	GGWCC	2 cut(s)	157, 190
Sse9I	AATT	2 cut(s)	203, 564
SsiI	CCGC	5 cut(s)	371, 374, 395, 515, 517
SspMI	CTAG	1 cut(s)	122
SstI	GAGCTC	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	192, 412
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	5 cut(s)	78, 135, 215, 320, 332
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	2 cut(s)	203, 564
TauI	GCSGC	2 cut(s)	374, 520
TfiI	GAWTC	5 cut(s)	80, 151, 322, 338, 499
Tru1I	TTAA	2 cut(s)	54, 580
Tru9I	TTAA	2 cut(s)	54, 580
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	3 cut(s)	36, 152, 444
Tth111I	GACNNNGTC	1 cut(s)	74
Van91I	CCANNNNNTGG	1 cut(s)	275
VpaK11BI	GGWCC	2 cut(s)	157, 190
XspI	CTAG	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.