Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004726

Physical Location & Seq

Genomic Coordinates Reverse (-)

24488619 .. 24492410

Gene Structure 3792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G257100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGACTTAGTCGGTAAGAAGGCCGGATCGGTCACTCCTGTGAAAGACCAACATGGTTCTCGATCCAAGAGGCACGGAAACTCGAGATATGCCGAGAATTTGAACCCCAATGTTTCTCCTGGGCCAAAACCCACGGCTTCCCCTGCGACGAAATCGACCAAGTCCCAGAAATCGGCCCCCAAGAACCCGAACCCGGTTGTTCATTCACCCCGGAACAAGATCCGGGAGAGGAAGTTCGTCGTGGCAAAGAAGAAATCGAAGAAAGAGAACCCGAATGTTGCTTGTAAATGCAAAGAGAAAGGTAATTCCAAGAAGTGTCTTTGCGTGGCCTATGAGAATCTGAGGGCATCGCAGGAAGAGTTTTTCAAGAACCGGAACGATGAATCGGATAGTTTGAAGGAGTGTGATAGAGCTGAGCGTGAACTCGAGGAAGAGATTGAGAAGGGTTTGAGGATTCAAGATGGGTTGGAGGGTGATTTTGACCCGAGTGAGATTGACCCGTCTGGTGAAATGAGTTCTTCGACCTTCAAGAGAAGGAGGGACAAGTTGTTGGAGGAGGCAAGGAAGAGTGTGCCTGAGCGAGGGAAAGTGATGCACTTGGTTCAGGCCTTTGAGAAACTCCTTTCGATTCCCTCGAAGGAATTGGATGAGCAGAAGGATGGGGAGGAACCAGAAGATAATGGCAAGAAGGCAGAAAAGTGGGCCTTACCTGGATTGCAACCTCCTAAGGTGCCTGAAGCACAGGTTTCGTCTTATTCGTTTTGTCCGTCCGATTTGTTTTTGACATCTGAGAATCTTGGTTTGGATCGGCGGCCTTCAGTTTCGTCTTCTTGGGATGGAAGTTTGGGAAGTGTTTCAAGCAGGACTTCCAATGGGGGGCGAAGGAGCCGAAGAAATAGCTCTGAATCATCTAGCACAATGGGAGGAAGGACATGGAAGAAAAAGCAGCTCAGAGCCACTAGCCTTAAACCATTCAAGCTAAGGACAGAGGAAAGGGGAAGACAAAAAGAGGAAGAGTTCATGAAGAAGATACAAGAGATGATGATAGAGGAGGAGAGGCAGCGGATACCAATTGCTCAGGGCCTCCCATGGACAACTGATGAACCAGAGTGCTTAATGAAACCTCCAGTAAAAGACATCACAATACCAACTGATCTGAAGCTCTACAGTGACATGCGGGCAGTAGAGCGAGCTGAGTTTGACCATCAGGTGGCCGAGAAGATGAACCTGTTTGAGCAATACAAGATGGAAAGAGAGAGACTGCAGAAGTTGGCAGAAGAGGAGGAAATAAGAAGGTTGAGAAAGGAGCTTGTTCCAAAAGCACAGCCGATGCCCTACTTTGACAGGCCTTTCATTCCCAGAAGGTCAATGAAGCATCCCACTATACCCAAAGAACCAAAGTTTCATGTGCCTCAGCAAAAGAAGATCAAGTCCTGCTTGCCATGGAACGATATCGGCTCCTATATTTACCAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

493

Amino Acids

56.45

Weight (kDa)

9.37

Isoelectric Point (pI)

67.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01015 AT5G15510 AT5G15510 AT5G15510 AT5G15510
fragaria_vesca	FvH4_6g47160 FvH4_6g47160
malus_domestica	MD00G1005800.v1.1 MD00G1006000.v1.1 MD09G1063100.v1.1 MD09G1063500.v1.1 MD09G1063700.v1.1 MD17G1057000.v1.1
prunus_persica	Prupe.3G257100_v2.0.a1 Prupe.3G257100_v2.0.a1 Prupe.3G257100_v2.0.a1
pyrus_communis	pycom111g05340 pycom17g05710
rosa_chinensis	RchiOBHm_Chr2g0166211
rosa_laevigata	RLG00000021595
rosa_multiflora	Rmu_co8521115.1_g000001 Rmu_sc0020961.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085110 Rroxscaffold_7G00206840
rosa_rugosa	Rorug02G0521000 Rorug02G0521100
rosa_samantha	Rh2AG587200 Rh2BG599000 Rh2CG569500 Rh2DG608800
rosa_wichuraiana	Rw2G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	730
AccB7I	CCANNNNNTGG	1 cut(s)	1210
AciI	CCGC	3 cut(s)	811, 1063, 1177
AclWI	GGATC	4 cut(s)	34, 57, 214, 813
AcoI	YGGCCR	1 cut(s)	1212
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	3 cut(s)	756, 801, 1178
AfiI	CCNNNNNNNGG	5 cut(s)	172, 193, 581, 876, 1210
AgsI	TTSAA	7 cut(s)	103, 367, 397, 458, 529, 858, 976
AjnI	CCWGG	2 cut(s)	118, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
AleI	CACNNNNGTG	1 cut(s)	38
AloI	GAACNNNNNNTCC	2 cut(s)	218, 250
AluBI	AGCT	7 cut(s)	413, 900, 949, 979, 1162, 1193, 1309
AluI	AGCT	7 cut(s)	413, 900, 949, 979, 1162, 1193, 1309
Alw26I	GTCTC	1 cut(s)	1252
AlwI	GGATC	4 cut(s)	34, 57, 214, 813
Ama87I	CYCGRG	3 cut(s)	82, 425, 484
ApeKI	GCWGC	2 cut(s)	946, 1060
ApoI	RAATTY	1 cut(s)	97
Asp700I	GAANNNNTTC	1 cut(s)	853
AspS9I	GGNCC	4 cut(s)	122, 175, 702, 1081
AsuC2I	CCSGG	3 cut(s)	194, 211, 224
AsuHPI	GGTGA	3 cut(s)	198, 485, 518
AvaI	CYCGRG	3 cut(s)	82, 425, 484
AxyI	CCTNAGG	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	730
BbsI	GAAGAC	2 cut(s)	819, 1006
BbvCI	CCTCAGC	1 cut(s)	1413
BbvI	GCAGC	2 cut(s)	958, 1072
BccI	CCATC	5 cut(s)	455, 653, 830, 1212, 1240
BceAI	ACGGC	1 cut(s)	150
BcgI	CGANNNNNNTGC	2 cut(s)	729, 763
BciT130I	CCWGG	2 cut(s)	120, 711
BciVI	GTATCC	1 cut(s)	1059
BcnI	CCSGG	3 cut(s)	194, 211, 224
BcoDI	GTCTC	1 cut(s)	1252
BfaI	CTAG	2 cut(s)	912, 960
BfmI	CTRYAG	2 cut(s)	1165, 1262
BfuI	GTATCC	1 cut(s)	1059
BisI	GCNGC	3 cut(s)	812, 947, 1061
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	3 cut(s)	813, 948, 1062
Bme1390I	CCNGG	5 cut(s)	120, 194, 211, 224, 711
BmeT110I	CYCGRG	3 cut(s)	82, 425, 484
BmgT120I	GGNCC	4 cut(s)	122, 175, 702, 1081
BmiI	GGNNCC	5 cut(s)	177, 669, 732, 887, 1459
BmrFI	CCNGG	5 cut(s)	120, 194, 211, 224, 711
BmsI	GCATC	4 cut(s)	356, 582, 1320, 1384
BpiI	GAAGAC	2 cut(s)	819, 1006
BpmI	CTGGAG	1 cut(s)	1110
Bpu10I	CCTNAGC	4 cut(s)	576, 980, 1077, 1413
Bpu1102I	GCTNAGC	1 cut(s)	414
BpuMI	CCSGG	3 cut(s)	194, 211, 224
BsaJI	CCNNGG	5 cut(s)	119, 132, 209, 1088, 1442
BsaWI	WCCGGW	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	5 cut(s)	172, 193, 581, 876, 1210
Bse1I	ACTGG	1 cut(s)	1127
Bse21I	CCTNAGG	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	120, 711
BseDI	CCNNGG	5 cut(s)	119, 132, 209, 1088, 1442
BseGI	GGATG	4 cut(s)	652, 664, 841, 1375
BseLI	CCNNNNNNNGG	5 cut(s)	172, 193, 581, 876, 1210
BseMII	CTCAG	8 cut(s)	332, 405, 567, 780, 964, 1091, 1185, 1427
BseNI	ACTGG	1 cut(s)	1127
BseRI	GAGGAG	4 cut(s)	569, 1064, 1067, 1295
BseXI	GCAGC	2 cut(s)	958, 1072
BshNI	GGYRCC	1 cut(s)	730
BsiHKCI	CYCGRG	3 cut(s)	82, 425, 484
BsiSI	CCGG	5 cut(s)	24, 194, 211, 223, 373
BslFI	GGGAC	2 cut(s)	148, 554
BslI	CCNNNNNNNGG	5 cut(s)	172, 193, 581, 876, 1210
BsmAI	GTCTC	1 cut(s)	1252
BsmFI	GGGAC	2 cut(s)	148, 554
BsoBI	CYCGRG	3 cut(s)	82, 425, 484
Bsp143I	GATC	6 cut(s)	26, 62, 219, 805, 1153, 1425
Bsp1720I	GCTNAGC	1 cut(s)	414
Bsp19I	CCATGG	2 cut(s)	1088, 1442
BspACI	CCGC	3 cut(s)	811, 1063, 1177
BspCNI	CTCAG	8 cut(s)	333, 406, 568, 781, 963, 1090, 1186, 1426
BspHI	TCATGA	1 cut(s)	1020
BspLI	GGNNCC	5 cut(s)	177, 669, 732, 887, 1459
BspMAI	CTGCAG	1 cut(s)	1266
BspPI	GGATC	4 cut(s)	34, 57, 214, 813
BspT107I	GGYRCC	1 cut(s)	730
BsrI	ACTGG	1 cut(s)	1127
BssECI	CCNNGG	5 cut(s)	119, 132, 209, 1088, 1442
BssMI	GATC	6 cut(s)	26, 62, 219, 805, 1153, 1425
BssT1I	CCWWGG	2 cut(s)	1088, 1442
Bst2UI	CCWGG	2 cut(s)	120, 711
Bst4CI	ACNGT	1 cut(s)	1169
Bst6I	CTCTTC	5 cut(s)	351, 426, 560, 1008, 1272
BstC8I	GCNNGC	3 cut(s)	1179, 1191, 1439
BstDSI	CCRYGG	3 cut(s)	132, 1088, 1442
BstENI	CCTNNNNNAGG	1 cut(s)	579
BstF5I	GGATG	4 cut(s)	652, 664, 841, 1375
BstKTI	GATC	6 cut(s)	29, 65, 222, 808, 1156, 1428
BstMAI	GTCTC	1 cut(s)	1252
BstMBI	GATC	6 cut(s)	26, 62, 219, 805, 1153, 1425
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	2 cut(s)	120, 711
BstNSI	RCATGY	1 cut(s)	1177
BstSCI	CCNGG	5 cut(s)	118, 192, 209, 222, 709
BstSFI	CTRYAG	2 cut(s)	1165, 1262
BstV1I	GCAGC	2 cut(s)	958, 1072
BstV2I	GAAGAC	2 cut(s)	819, 1006
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	726
BsuI	GTATCC	1 cut(s)	1059
BtgI	CCRYGG	3 cut(s)	132, 1088, 1442
BtgZI	GCGATG	1 cut(s)	333
BtsCI	GGATG	4 cut(s)	652, 664, 841, 1375
BtsIMutI	CAGTG	1 cut(s)	1174
Cac8I	GCNNGC	3 cut(s)	1179, 1191, 1439
CciI	TCATGA	1 cut(s)	1020
Cfr13I	GGNCC	4 cut(s)	122, 175, 702, 1081
CviAII	CATG	7 cut(s)	53, 933, 1021, 1089, 1174, 1406, 1443
DpnI	GATC	6 cut(s)	28, 64, 221, 807, 1155, 1427
DpnII	GATC	6 cut(s)	26, 62, 219, 805, 1153, 1425
EaeI	YGGCCR	1 cut(s)	1212
Eam1104I	CTCTTC	5 cut(s)	351, 426, 560, 1008, 1272
EarI	CTCTTC	5 cut(s)	351, 426, 560, 1008, 1272
Eco130I	CCWWGG	2 cut(s)	1088, 1442
Eco147I	AGGCCT	2 cut(s)	608, 1348
Eco32I	GATATC	1 cut(s)	1453
Eco57I	CTGAAG	3 cut(s)	756, 801, 1178
Eco81I	CCTNAGG	1 cut(s)	726
Eco88I	CYCGRG	3 cut(s)	82, 425, 484
EcoNI	CCTNNNNNAGG	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	1081
EcoRII	CCWGG	2 cut(s)	118, 709
EcoRV	GATATC	1 cut(s)	1453
EcoT14I	CCWWGG	2 cut(s)	1088, 1442
ErhI	CCWWGG	2 cut(s)	1088, 1442
FaeI	CATG	7 cut(s)	56, 936, 1024, 1092, 1177, 1409, 1446
FalI	AAGNNNNNCTT	6 cut(s)	689, 721, 850, 882, 1421, 1453
FaqI	GGGAC	2 cut(s)	148, 554
FatI	CATG	7 cut(s)	52, 932, 1020, 1088, 1173, 1405, 1442
FauI	CCCGC	1 cut(s)	1170
Fnu4HI	GCNGC	3 cut(s)	812, 947, 1061
FokI	GGATG	4 cut(s)	659, 671, 848, 1362
Fsp4HI	GCNGC	3 cut(s)	812, 947, 1061
FspBI	CTAG	2 cut(s)	912, 960
GluI	GCNGC	3 cut(s)	812, 947, 1061
GsuI	CTGGAG	1 cut(s)	1110
HapII	CCGG	5 cut(s)	24, 194, 211, 223, 373
Hin1II	CATG	7 cut(s)	56, 936, 1024, 1092, 1177, 1409, 1446
HinfI	GANTC	6 cut(s)	337, 383, 454, 628, 793, 905
HpaII	CCGG	5 cut(s)	24, 194, 211, 223, 373
HphI	GGTGA	3 cut(s)	198, 485, 518
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	7 cut(s)	342, 388, 772, 790, 904, 953, 1158
Hpy188III	TCNNGA	6 cut(s)	60, 84, 367, 458, 529, 1021
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	2 cut(s)	151, 242
HpyCH4III	ACNGT	1 cut(s)	1169
HpyCH4V	TGCA	4 cut(s)	291, 595, 718, 1264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
Hsp92II	CATG	7 cut(s)	56, 936, 1024, 1092, 1177, 1409, 1446
Kzo9I	GATC	6 cut(s)	26, 62, 219, 805, 1153, 1425
LmnI	GCTCC	3 cut(s)	885, 1306, 1463
Lsp1109I	GCAGC	2 cut(s)	958, 1072
LweI	GCATC	4 cut(s)	356, 582, 1320, 1384
MaeI	CTAG	2 cut(s)	912, 960
MaeIII	GTNAC	2 cut(s)	31, 1169
MalI	GATC	6 cut(s)	28, 64, 221, 807, 1155, 1427
MboI	GATC	6 cut(s)	26, 62, 219, 805, 1153, 1425
MfeI	CAATTG	1 cut(s)	1071
MflI	RGATCY	1 cut(s)	219
MluCI	AATT	4 cut(s)	97, 304, 641, 1071
MmeI	TCCRAC	2 cut(s)	447, 531
MroXI	GAANNNNTTC	1 cut(s)	853
MseI	TTAA	2 cut(s)	966, 1115
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	1063
MspI	CCGG	5 cut(s)	24, 194, 211, 223, 373
MspR9I	CCNGG	5 cut(s)	120, 194, 211, 224, 711
MunI	CAATTG	1 cut(s)	1071
MvaI	CCWGG	2 cut(s)	120, 711
MwoI	GCNNNNNNNGC	1 cut(s)	143
NciI	CCSGG	3 cut(s)	194, 211, 224
NcoI	CCATGG	2 cut(s)	1088, 1442
NdeII	GATC	6 cut(s)	26, 62, 219, 805, 1153, 1425
NlaIII	CATG	7 cut(s)	56, 936, 1024, 1092, 1177, 1409, 1446
NlaIV	GGNNCC	5 cut(s)	177, 669, 732, 887, 1459
NmeAIII	GCCGAG	2 cut(s)	118, 1240
NmuCI	GTSAC	2 cut(s)	31, 1169
NspI	RCATGY	1 cut(s)	1177
OliI	CACNNNNGTG	1 cut(s)	38
PaeR7I	CTCGAG	2 cut(s)	82, 425
PagI	TCATGA	1 cut(s)	1020
PceI	AGGCCT	2 cut(s)	608, 1348
PcsI	WCGNNNNNNNCGW	3 cut(s)	632, 755, 764
PdmI	GAANNNNTTC	1 cut(s)	853
PfeI	GAWTC	6 cut(s)	337, 383, 454, 628, 793, 905
PflFI	GACNNNGTC	2 cut(s)	8, 160
PflMI	CCANNNNNTGG	1 cut(s)	1210
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	813, 948, 1062
Psp6I	CCWGG	2 cut(s)	118, 709
PspGI	CCWGG	2 cut(s)	118, 709
PspN4I	GGNNCC	5 cut(s)	177, 669, 732, 887, 1459
PspPI	GGNCC	4 cut(s)	122, 175, 702, 1081
PspXI	VCTCGAGB	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	1266
PsuI	RGATCY	1 cut(s)	219
PsyI	GACNNNGTC	2 cut(s)	8, 160
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	966, 1115
SatI	GCNGC	3 cut(s)	812, 947, 1061
Sau3AI	GATC	6 cut(s)	26, 62, 219, 805, 1153, 1425
Sau96I	GGNCC	4 cut(s)	122, 175, 702, 1081
ScrFI	CCNGG	5 cut(s)	120, 194, 211, 224, 711
SfaNI	GCATC	4 cut(s)	356, 582, 1320, 1384
SfcI	CTRYAG	2 cut(s)	1165, 1262
Sfr274I	CTCGAG	2 cut(s)	82, 425
SlaI	CTCGAG	2 cut(s)	82, 425
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	82, 425
SmoI	CTYRAG	2 cut(s)	82, 425
Sse9I	AATT	4 cut(s)	97, 304, 641, 1071
SseBI	AGGCCT	2 cut(s)	608, 1348
SsiI	CCGC	3 cut(s)	811, 1063, 1177
SspMI	CTAG	2 cut(s)	912, 960
StuI	AGGCCT	2 cut(s)	608, 1348
StyD4I	CCNGG	5 cut(s)	118, 192, 209, 222, 709
StyI	CCWWGG	2 cut(s)	1088, 1442
TaaI	ACNGT	1 cut(s)	1169
TaqI	TCGA	8 cut(s)	61, 83, 155, 257, 426, 521, 626, 635
TaqII	GACCGA	1 cut(s)	19
TasI	AATT	4 cut(s)	97, 304, 641, 1071
TauI	GCSGC	1 cut(s)	814
TfiI	GAWTC	6 cut(s)	337, 383, 454, 628, 793, 905
Tru1I	TTAA	2 cut(s)	966, 1115
Tru9I	TTAA	2 cut(s)	966, 1115
TscAI	CASTG	1 cut(s)	1174
TseFI	GTSAC	2 cut(s)	31, 1169
TseI	GCWGC	2 cut(s)	946, 1060
Tsp45I	GTSAC	2 cut(s)	31, 1169
TspGWI	ACGGA	2 cut(s)	90, 756
TspRI	CASTG	1 cut(s)	1174
Tth111I	GACNNNGTC	2 cut(s)	8, 160
Van91I	CCANNNNNTGG	1 cut(s)	1210
XagI	CCTNNNNNAGG	1 cut(s)	579
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	1 cut(s)	1177
XhoI	CTCGAG	2 cut(s)	82, 425
XmnI	GAANNNNTTC	1 cut(s)	853
XspI	CTAG	2 cut(s)	912, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.