Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004726

Physical Location & Seq

Genomic Coordinates Reverse (-)

76452507 .. 76455866

Gene Structure 3360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G048950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGACTCGGTCGGCAAGAGCGCCGGAGCGGTGACTCCGATCAGAGACCAACACGGCTCCCGATCCAAGAAGCAAGAAAACTCCAGATACTCCGAGAATCTAAACCCCAACGTCTCTCCCGGCCCGAAATCGGCCAAGTCCCAGAAATCGGGTTCCAAGAACCCGAACCCGGTTTTCCAGTCGCCCCGGAAGAAGATCCGGGAGAGGAAATTCGTGGTGGCGAAGAAGAGAGGGAAGAAGGAGGAGAATCCGAATCCGAATCCGAATTCGAACACCGAGTGCAGCAAATGCAAAGAGAAAGGCGGCGATTCGAAGAAGAAGTGTCTGTGTGTGGCTTACGAGAATCTGAGGGCTTCTCAGGAGGAGTTCTTCAAGACCCGACCCGAACCCGAAAACGGGTCGAAGGAGTCCGACAGGGCCGATGATCGGGAACTCGAGGAGGCCTTGCTGATTCAGGACCAGGACTTCGACGATCGCGACCCGGGCGAGCCCGACCCGACTGACGAAACGGGTACGATTAAGAGGAGGAGGGCGAGGCTGTTGGAGGAGGCGAGGAAGAGCGTGCCGGCGCGTGGCAAGGTGATGCACTTGGTTCAGGCGTTTGAGAAGCTGCTCACGATTCCCAAGGAAGGAGACGAAGCAGAGGAAGAAGAGAGTGGTAAGAAGGCTACGAAGTGGGCCTTGCCTGGGCTTCAACCGCCGGAGGCCCATGAGTCGTCGTCGTCGTCGTTTTGCCCGTCGGATTTGTTTCTGACGTCGGAGAATCTCGGGCTGGATCGCCGGCCGTCGCTGGCGTCATCTTGGGATGGAAGCATTTCGAACAGGACGTCGAATGGGGGAGGAGAAGCCGAAGAAATAGCTCGGAGTCGTCTGGCACGATTGGAGGAAGTAGATGGAAAAAGAAGCAGCAGCTCAGAGCAACTAGCCTTAAACCATTCAAGCTCAGGACAGAGGAAAGGGGGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

322

Amino Acids

35.53

Weight (kDa)

8.45

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01015 AT5G15510 AT5G15510 AT5G15510 AT5G15510
fragaria_vesca	FvH4_6g47160 FvH4_6g47160
malus_domestica	MD00G1005800.v1.1 MD00G1006000.v1.1 MD09G1063100.v1.1 MD09G1063500.v1.1 MD09G1063700.v1.1 MD17G1057000.v1.1
prunus_persica	Prupe.3G257100_v2.0.a1 Prupe.3G257100_v2.0.a1 Prupe.3G257100_v2.0.a1
pyrus_communis	pycom111g05340 pycom17g05710
rosa_chinensis	RchiOBHm_Chr2g0166211
rosa_laevigata	RLG00000021595
rosa_multiflora	Rmu_co8521115.1_g000001 Rmu_sc0020961.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085110 Rroxscaffold_7G00206840
rosa_rugosa	Rorug02G0521000 Rorug02G0521100
rosa_samantha	Rh2AG587200 Rh2BG599000 Rh2CG569500 Rh2DG608800
rosa_wichuraiana	Rw2G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	758, 830
AccBSI	CCGCTC	1 cut(s)	29
AccII	CGCG	2 cut(s)	477, 571
AciI	CCGC	3 cut(s)	29, 303, 698
AclWI	GGATC	3 cut(s)	57, 190, 783
AcoI	YGGCCR	2 cut(s)	132, 782
AcsI	RAATTY	2 cut(s)	209, 265
AcyI	GRCGYC	3 cut(s)	755, 794, 827
AdeI	CACNNNGTG	1 cut(s)	279
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	9 cut(s)	130, 148, 169, 395, 396, 426, 572, 629, 687
AgsI	TTSAA	3 cut(s)	373, 695, 939
AjnI	CCWGG	2 cut(s)	459, 685
AluBI	AGCT	4 cut(s)	610, 860, 912, 942
AluI	AGCT	4 cut(s)	610, 860, 912, 942
Alw26I	GTCTC	3 cut(s)	39, 118, 627
AlwI	GGATC	3 cut(s)	57, 190, 783
Ama87I	CYCGRG	3 cut(s)	434, 481, 767
AoxI	GGCC	7 cut(s)	121, 132, 417, 441, 678, 705, 782
ApeKI	GCWGC	4 cut(s)	282, 610, 906, 909
ApoI	RAATTY	2 cut(s)	209, 265
ArsI	GACNNNNNNTTYG	4 cut(s)	449, 481, 812, 844
Asp700I	GAANNNNTTC	1 cut(s)	814
AspLEI	GCGC	2 cut(s)	23, 571
AspS9I	GGNCC	5 cut(s)	122, 417, 457, 678, 706
AsuC2I	CCSGG	6 cut(s)	120, 170, 187, 200, 482, 483
AsuHPI	GGTGA	2 cut(s)	43, 592
AsuII	TTCGAA	3 cut(s)	269, 311, 818
AvaI	CYCGRG	3 cut(s)	434, 481, 767
AvaII	GGWCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	492
BbvI	GCAGC	4 cut(s)	294, 597, 918, 921
BccI	CCATC	2 cut(s)	800, 887
BceAI	ACGGC	2 cut(s)	70, 769
BciT130I	CCWGG	2 cut(s)	461, 687
BcnI	CCSGG	6 cut(s)	120, 170, 187, 200, 482, 483
BcoDI	GTCTC	3 cut(s)	39, 118, 627
BfaI	CTAG	1 cut(s)	923
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	5 cut(s)	283, 304, 611, 907, 910
BlsI	GCNGC	5 cut(s)	284, 305, 612, 908, 911
Bme1390I	CCNGG	8 cut(s)	120, 170, 187, 200, 461, 482, 483, 687
Bme18I	GGWCC	1 cut(s)	457
BmeT110I	CYCGRG	3 cut(s)	434, 481, 767
BmgT120I	GGNCC	5 cut(s)	122, 417, 457, 678, 706
BmiI	GGNNCC	2 cut(s)	58, 154
BmrFI	CCNGG	8 cut(s)	120, 170, 187, 200, 461, 482, 483, 687
BmsI	GCATC	1 cut(s)	573
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
BpmI	CTGGAG	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	943
Bpu14I	TTCGAA	3 cut(s)	269, 311, 818
BpuMI	CCSGG	6 cut(s)	120, 170, 187, 200, 482, 483
BsaHI	GRCGYC	3 cut(s)	755, 794, 827
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	4 cut(s)	185, 481, 624, 686
Bsc4I	CCNNNNNNNGG	9 cut(s)	130, 148, 169, 395, 396, 426, 572, 629, 687
Bse118I	RCCGGY	2 cut(s)	565, 780
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	461, 687
BseDI	CCNNGG	4 cut(s)	185, 481, 624, 686
BseGI	GGATG	1 cut(s)	811
BseLI	CCNNNNNNNGG	9 cut(s)	130, 148, 169, 395, 396, 426, 572, 629, 687
BseMII	CTCAG	4 cut(s)	338, 371, 927, 957
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	7 cut(s)	257, 377, 452, 538, 541, 560, 855
BseX3I	CGGCCG	1 cut(s)	782
BseXI	GCAGC	4 cut(s)	294, 597, 918, 921
BsgI	GTGCAG	1 cut(s)	301
Bsh1236I	CGCG	2 cut(s)	477, 571
Bsh1285I	CGRYCG	3 cut(s)	12, 475, 785
BshFI	GGCC	7 cut(s)	123, 134, 419, 443, 680, 707, 784
BsiEI	CGRYCG	3 cut(s)	12, 475, 785
BsiHKCI	CYCGRG	3 cut(s)	434, 481, 767
BsiSI	CCGG	9 cut(s)	24, 120, 170, 187, 199, 482, 566, 701, 781
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	9 cut(s)	130, 148, 169, 395, 396, 426, 572, 629, 687
BsmAI	GTCTC	3 cut(s)	39, 118, 627
BsmBI	CGTCTC	2 cut(s)	118, 627
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	7 cut(s)	123, 134, 419, 443, 680, 707, 784
Bso31I	GGTCTC	1 cut(s)	39
BsoBI	CYCGRG	3 cut(s)	434, 481, 767
Bsp119I	TTCGAA	3 cut(s)	269, 311, 818
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	6 cut(s)	39, 62, 195, 424, 472, 775
Bsp68I	TCGCGA	1 cut(s)	477
BspACI	CCGC	3 cut(s)	29, 303, 698
BspANI	GGCC	7 cut(s)	123, 134, 419, 443, 680, 707, 784
BspCNI	CTCAG	4 cut(s)	339, 370, 926, 956
BspFNI	CGCG	2 cut(s)	477, 571
BspLI	GGNNCC	2 cut(s)	58, 154
BspPI	GGATC	3 cut(s)	57, 190, 783
BspQI	GCTCTTC	1 cut(s)	551
BspT104I	TTCGAA	3 cut(s)	269, 311, 818
BspTNI	GGTCTC	1 cut(s)	39
BsrBI	CCGCTC	1 cut(s)	29
BsrFI	RCCGGY	2 cut(s)	565, 780
BsrI	ACTGG	1 cut(s)	178
BssAI	RCCGGY	2 cut(s)	565, 780
BssECI	CCNNGG	4 cut(s)	185, 481, 624, 686
BssMI	GATC	6 cut(s)	39, 62, 195, 424, 472, 775
BssNI	GRCGYC	3 cut(s)	755, 794, 827
BssT1I	CCWWGG	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	461, 687
Bst6I	CTCTTC	3 cut(s)	221, 551, 645
BstACI	GRCGYC	3 cut(s)	755, 794, 827
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstBI	TTCGAA	3 cut(s)	269, 311, 818
BstC8I	GCNNGC	5 cut(s)	488, 563, 567, 782, 792
BstDEI	CTNAG	4 cut(s)	347, 357, 913, 943
BstF5I	GGATG	1 cut(s)	811
BstFNI	CGCG	2 cut(s)	477, 571
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	23, 571
BstKTI	GATC	6 cut(s)	42, 65, 198, 427, 475, 778
BstMAI	GTCTC	3 cut(s)	39, 118, 627
BstMBI	GATC	6 cut(s)	39, 62, 195, 424, 472, 775
BstMCI	CGRYCG	3 cut(s)	12, 475, 785
BstMWI	GCNNNNNNNGC	3 cut(s)	288, 483, 697
BstNI	CCWGG	2 cut(s)	461, 687
BstSCI	CCNGG	8 cut(s)	118, 168, 185, 198, 459, 480, 481, 685
BstUI	CGCG	2 cut(s)	477, 571
BstV1I	GCAGC	4 cut(s)	294, 597, 918, 921
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BstZI	CGGCCG	1 cut(s)	782
BsuRI	GGCC	7 cut(s)	123, 134, 419, 443, 680, 707, 784
BtsCI	GGATG	1 cut(s)	811
BtuMI	TCGCGA	1 cut(s)	477
Cac8I	GCNNGC	5 cut(s)	488, 563, 567, 782, 792
CfoI	GCGC	2 cut(s)	23, 571
Cfr10I	RCCGGY	2 cut(s)	565, 780
Cfr13I	GGNCC	5 cut(s)	122, 417, 457, 678, 706
Cfr9I	CCCGGG	1 cut(s)	481
CseI	GACGC	1 cut(s)	783
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	1 cut(s)	710
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	4 cut(s)	347, 357, 913, 943
DpnI	GATC	6 cut(s)	41, 64, 197, 426, 474, 777
DpnII	GATC	6 cut(s)	39, 62, 195, 424, 472, 775
DraIII	CACNNNGTG	1 cut(s)	279
EaeI	YGGCCR	2 cut(s)	132, 782
EagI	CGGCCG	1 cut(s)	782
Eam1104I	CTCTTC	3 cut(s)	221, 551, 645
EarI	CTCTTC	3 cut(s)	221, 551, 645
EclXI	CGGCCG	1 cut(s)	782
Eco130I	CCWWGG	1 cut(s)	624
Eco147I	AGGCCT	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	457
Eco52I	CGGCCG	1 cut(s)	782
Eco88I	CYCGRG	3 cut(s)	434, 481, 767
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	459, 685
EcoT14I	CCWWGG	1 cut(s)	624
EcoT38I	GRGCYC	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	624
Esp3I	CGTCTC	2 cut(s)	118, 627
FaeI	CATG	1 cut(s)	713
FaiI	YATR	1 cut(s)	711
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	1 cut(s)	709
Fnu4HI	GCNGC	5 cut(s)	283, 304, 611, 907, 910
FokI	GGATG	1 cut(s)	818
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	5 cut(s)	283, 304, 611, 907, 910
FspBI	CTAG	1 cut(s)	923
GlaI	GCGC	2 cut(s)	22, 570
GluI	GCNGC	5 cut(s)	283, 304, 611, 907, 910
GsuI	CTGGAG	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	7 cut(s)	123, 134, 419, 443, 680, 707, 784
HapII	CCGG	9 cut(s)	24, 120, 170, 187, 199, 482, 566, 701, 781
HgaI	GACGC	1 cut(s)	783
HhaI	GCGC	2 cut(s)	23, 571
Hin1I	GRCGYC	3 cut(s)	755, 794, 827
Hin1II	CATG	1 cut(s)	713
Hin6I	GCGC	2 cut(s)	21, 569
HinP1I	GCGC	2 cut(s)	21, 569
HpaII	CCGG	9 cut(s)	24, 120, 170, 187, 199, 482, 566, 701, 781
HphI	GGTGA	2 cut(s)	43, 592
Hpy188III	TCNNGA	9 cut(s)	60, 84, 359, 373, 428, 455, 476, 616, 945
Hpy99I	CGWCG	9 cut(s)	473, 721, 724, 727, 730, 742, 760, 790, 832
HpyAV	CCTTC	4 cut(s)	232, 397, 623, 658
HpyCH4IV	ACGT	3 cut(s)	111, 755, 827
HpyCH4V	TGCA	3 cut(s)	282, 291, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	288, 483, 697
HpyF3I	CTNAG	4 cut(s)	347, 357, 913, 943
HpySE526I	ACGT	3 cut(s)	111, 755, 827
Hsp92I	GRCGYC	3 cut(s)	755, 794, 827
Hsp92II	CATG	1 cut(s)	713
HspAI	GCGC	2 cut(s)	21, 569
KroI	GCCGGC	2 cut(s)	565, 780
KroNI	GCCGGC	2 cut(s)	567, 782
Kzo9I	GATC	6 cut(s)	39, 62, 195, 424, 472, 775
LguI	GCTCTTC	1 cut(s)	551
LmnI	GCTCC	2 cut(s)	26, 62
Lsp1109I	GCAGC	4 cut(s)	294, 597, 918, 921
LweI	GCATC	1 cut(s)	573
MaeI	CTAG	1 cut(s)	923
MaeII	ACGT	3 cut(s)	111, 755, 827
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	6 cut(s)	41, 64, 197, 426, 474, 777
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	6 cut(s)	39, 62, 195, 424, 472, 775
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	2 cut(s)	209, 265
MlyI	GAGTC	4 cut(s)	28, 416, 722, 874
MmeI	TCCRAC	4 cut(s)	435, 522, 720, 738
MroNI	GCCGGC	2 cut(s)	565, 780
MroXI	GAANNNNTTC	1 cut(s)	814
MseI	TTAA	2 cut(s)	519, 929
MspI	CCGG	9 cut(s)	24, 120, 170, 187, 199, 482, 566, 701, 781
MspR9I	CCNGG	8 cut(s)	120, 170, 187, 200, 461, 482, 483, 687
MvaI	CCWGG	2 cut(s)	461, 687
MvnI	CGCG	2 cut(s)	477, 571
MwoI	GCNNNNNNNGC	3 cut(s)	288, 483, 697
NaeI	GCCGGC	2 cut(s)	567, 782
NciI	CCSGG	6 cut(s)	120, 170, 187, 200, 482, 483
NdeII	GATC	6 cut(s)	39, 62, 195, 424, 472, 775
NgoMIV	GCCGGC	2 cut(s)	565, 780
NlaIII	CATG	1 cut(s)	713
NlaIV	GGNNCC	2 cut(s)	58, 154
NmuCI	GTSAC	1 cut(s)	31
NruI	TCGCGA	1 cut(s)	477
NspV	TTCGAA	3 cut(s)	269, 311, 818
PaeR7I	CTCGAG	1 cut(s)	434
PceI	AGGCCT	1 cut(s)	443
PciSI	GCTCTTC	1 cut(s)	551
PcsI	WCGNNNNNNNCGW	6 cut(s)	474, 722, 725, 734, 824, 874
PdiI	GCCGGC	2 cut(s)	567, 782
PdmI	GAANNNNTTC	1 cut(s)	814
PfeI	GAWTC	9 cut(s)	97, 247, 253, 259, 308, 343, 451, 619, 763
PflFI	GACNNNGTC	1 cut(s)	8
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	5 cut(s)	284, 305, 612, 908, 911
Ple19I	CGATCG	1 cut(s)	475
PleI	GAGTC	4 cut(s)	28, 415, 721, 873
PpsI	GAGTC	4 cut(s)	28, 415, 721, 873
Psp6I	CCWGG	2 cut(s)	459, 685
PspGI	CCWGG	2 cut(s)	459, 685
PspN4I	GGNNCC	2 cut(s)	58, 154
PspPI	GGNCC	5 cut(s)	122, 417, 457, 678, 706
PspXI	VCTCGAGB	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	195
PsyI	GACNNNGTC	1 cut(s)	8
PvuI	CGATCG	1 cut(s)	475
RruI	TCGCGA	1 cut(s)	477
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
SapI	GCTCTTC	1 cut(s)	551
SaqAI	TTAA	2 cut(s)	519, 929
SatI	GCNGC	5 cut(s)	283, 304, 611, 907, 910
Sau3AI	GATC	6 cut(s)	39, 62, 195, 424, 472, 775
Sau96I	GGNCC	5 cut(s)	122, 417, 457, 678, 706
SchI	GAGTC	4 cut(s)	28, 416, 722, 874
ScrFI	CCNGG	8 cut(s)	120, 170, 187, 200, 461, 482, 483, 687
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	8 cut(s)	114, 582, 612, 758, 830, 862, 914, 944
SfaNI	GCATC	1 cut(s)	573
Sfr274I	CTCGAG	1 cut(s)	434
SfuI	TTCGAA	3 cut(s)	269, 311, 818
SinI	GGWCC	1 cut(s)	457
SlaI	CTCGAG	1 cut(s)	434
SmaI	CCCGGG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	2 cut(s)	209, 265
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	3 cut(s)	29, 303, 698
SspMI	CTAG	1 cut(s)	923
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	8 cut(s)	118, 168, 185, 198, 459, 480, 481, 685
StyI	CCWWGG	1 cut(s)	624
TaiI	ACGT	3 cut(s)	114, 758, 830
TaqI	TCGA	7 cut(s)	269, 311, 401, 435, 468, 818, 830
TasI	AATT	2 cut(s)	209, 265
TauI	GCSGC	1 cut(s)	306
TfiI	GAWTC	9 cut(s)	97, 247, 253, 259, 308, 343, 451, 619, 763
Tru1I	TTAA	2 cut(s)	519, 929
Tru9I	TTAA	2 cut(s)	519, 929
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	4 cut(s)	282, 610, 906, 909
Tsp45I	GTSAC	1 cut(s)	31
TspMI	CCCGGG	1 cut(s)	481
Tth111I	GACNNNGTC	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	457
XapI	RAATTY	2 cut(s)	209, 265
XhoI	CTCGAG	1 cut(s)	434
XmaI	CCCGGG	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	814
XspI	CTAG	1 cut(s)	923
ZraI	GACGTC	2 cut(s)	756, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.