Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004726

Physical Location & Seq

Genomic Coordinates Reverse (-)

65280746 .. 65281892

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0521100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCTGAAGCACTGGTTGGCGTACTTCTAGATCGCTTGGCTTCGATCACACTTAACAAGGTCGACCAAGAGCTGAATCTGGTCATAGGTGTGGACAAAGAAATTGAAAATCTCACCCGCACTCTCAAAGCTATCCAAGCTGTGCTGGAGGATGCAGAGCAAAGGCAAGTTCAGGAGGCCTCTGTCAGACTTTGGCTGAATAACTTGAAAGAAGTATCGGATGAGATTGACGACGTGTTGGACGAGTGGAGCTATGAAATTCTTAAGCATGCAGCAAATTGTAGAGAAACAACAAGGAGAAGACGTCCATGCTGTTGTTCTGATGGAGTCAATGTAGTTCATCGTCATGGCATTGCGAAAAAGATAAAAGACCTAAGTGAGAGGCTGGCTTTAATTGATGCTGAAAGACAAACTTATCAGTTTCACTATATTGAAAGAAGATCTGAACAACTCATTAAACATCAGAAAACTTCTTCTGTTCTCGACAAATCATTTGGTCGAGAATATGAAAAAGAGAGTTTAGTAAGCAAGTTACTAAATGATGGGGGTGAAGAAGAGAGTGTTCCCATTATCATTCCTATTGTAGGAATGGGAGGGATCGGAAAGACAACTCTTTGTCAATTAGTGTATAATGATAAAAGAGTGAAAGATCATTTTGACAATAGAATATGGATATGTGTCTCAGAGCCTTTTGAAGAGATCCAAATTGTTGCGGCTATCGCTCAAGGTCTTGGTATAAGAGATCACCCCGCGTCAAATGCTTTGGAAACTTATTCACAATATATAATTAGCTGCATTAAGAAAATAGATAATGGAGAAAAGAAAAGAGACGAAACAAAATTCCTCATCGTCCTAGATGGTGTACGGAATCCAACTGAAAGTCAATGGGAACAAGTAATTAAACCTTTGCGCGAGGGTGCTAGAGGGAGTAGAATATTGGTGACCACCCGAATTGAGAAGGTTGCGGTTATGATGGGGGTAGCCAGTAACGTGATTCATTTGGAAATGTTAAGTGAAGATGATTGCCGATCGTTATTTTTTCACTTTGCAATTTGCATCCATTGGAAGGGAAATAAAGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

361

Amino Acids

41.15

Weight (kDa)

5.89

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	6 - 97	2.4e-23	Rx N-terminal domain
NB-ARC	PF00931	168 - 349	6.5e-31	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01015 AT5G15510 AT5G15510 AT5G15510 AT5G15510
fragaria_vesca	FvH4_6g47160 FvH4_6g47160
malus_domestica	MD00G1005800.v1.1 MD00G1006000.v1.1 MD09G1063100.v1.1 MD09G1063500.v1.1 MD09G1063700.v1.1 MD17G1057000.v1.1
prunus_persica	Prupe.3G257100_v2.0.a1 Prupe.3G257100_v2.0.a1 Prupe.3G257100_v2.0.a1
pyrus_communis	pycom111g05340 pycom17g05710
rosa_chinensis	RchiOBHm_Chr2g0166211
rosa_laevigata	RLG00000021595
rosa_multiflora	Rmu_co8521115.1_g000001 Rmu_sc0020961.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085110 Rroxscaffold_7G00206840
rosa_rugosa	Rorug02G0521000 Rorug02G0521100
rosa_samantha	Rh2AG587200 Rh2BG599000 Rh2CG569500 Rh2DG608800
rosa_wichuraiana	Rw2G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	2 cut(s)	752, 912
AciI	CCGC	4 cut(s)	118, 713, 750, 965
AclWI	GGATC	2 cut(s)	605, 694
AcsI	RAATTY	2 cut(s)	258, 839
AcuI	CTGAAG	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	304
AfaI	GTAC	2 cut(s)	24, 864
AfiI	CCNNNNNNNGG	2 cut(s)	584, 1066
AflII	CTTAAG	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	4 cut(s)	107, 208, 434, 695
AjiI	CACGTC	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AluBI	AGCT	5 cut(s)	73, 131, 140, 252, 792
AluI	AGCT	5 cut(s)	73, 131, 140, 252, 792
Alw26I	GTCTC	2 cut(s)	685, 822
AlwI	GGATC	2 cut(s)	605, 694
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	272, 792
ApoI	RAATTY	2 cut(s)	258, 839
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspLEI	GCGC	1 cut(s)	912
AsuHPI	GGTGA	4 cut(s)	106, 560, 737, 952
BbsI	GAAGAC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	284, 779
BccI	CCATC	4 cut(s)	317, 536, 851, 967
BcoDI	GTCTC	2 cut(s)	685, 822
BfaI	CTAG	3 cut(s)	29, 854, 921
BfrI	CTTAAG	1 cut(s)	263
BglII	AGATCT	1 cut(s)	440
BisI	GCNGC	3 cut(s)	273, 714, 793
BlsI	GCNGC	3 cut(s)	274, 715, 794
BmgBI	CACGTC	1 cut(s)	235
BmsI	GCATC	3 cut(s)	142, 388, 1065
BpiI	GAAGAC	1 cut(s)	307
BpmI	CTGGAG	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	708
BsaHI	GRCGYC	1 cut(s)	304
BsaXI	ACNNNNNCTCC	4 cut(s)	289, 318, 319, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 1066
Bse1I	ACTGG	2 cut(s)	18, 984
Bse3DI	GCAATG	1 cut(s)	351
BseGI	GGATG	3 cut(s)	157, 226, 1056
BseLI	CCNNNNNNNGG	2 cut(s)	584, 1066
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	2 cut(s)	18, 984
BseXI	GCAGC	2 cut(s)	284, 779
Bsh1236I	CGCG	2 cut(s)	752, 912
Bsh1285I	CGRYCG	1 cut(s)	1031
BshFI	GGCC	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	1031
BslI	CCNNNNNNNGG	2 cut(s)	584, 1066
BsmAI	GTCTC	2 cut(s)	685, 822
BsmBI	CGTCTC	1 cut(s)	822
BsnI	GGCC	1 cut(s)	179
Bsp143I	GATC	8 cut(s)	31, 45, 440, 597, 649, 699, 742, 1028
BspACI	CCGC	4 cut(s)	118, 713, 750, 965
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	695
BspFNI	CGCG	2 cut(s)	752, 912
BspPI	GGATC	2 cut(s)	605, 694
BspTI	CTTAAG	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	18, 984
BssMI	GATC	8 cut(s)	31, 45, 440, 597, 649, 699, 742, 1028
BssNI	GRCGYC	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	549, 690
BstACI	GRCGYC	1 cut(s)	304
BstAFI	CTTAAG	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	270, 387
BstDEI	CTNAG	2 cut(s)	374, 682
BstEII	GGTNACC	1 cut(s)	940
BstENI	CCTNNNNNAGG	1 cut(s)	582
BstF5I	GGATG	3 cut(s)	157, 226, 1056
BstFNI	CGCG	2 cut(s)	752, 912
BstHHI	GCGC	1 cut(s)	912
BstKTI	GATC	8 cut(s)	34, 48, 443, 600, 652, 702, 745, 1031
BstMAI	GTCTC	2 cut(s)	685, 822
BstMBI	GATC	8 cut(s)	31, 45, 440, 597, 649, 699, 742, 1028
BstMCI	CGRYCG	1 cut(s)	1031
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 719, 758
BstNSI	RCATGY	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	940
BstUI	CGCG	2 cut(s)	752, 912
BstV1I	GCAGC	2 cut(s)	284, 779
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	2 cut(s)	440, 699
BstYI	RGATCY	2 cut(s)	440, 699
BsuRI	GGCC	1 cut(s)	179
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	157, 226, 1056
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	270, 387
CfoI	GCGC	1 cut(s)	912
CseI	GACGC	1 cut(s)	741
Csp6I	GTAC	2 cut(s)	23, 863
CspCI	CAANNNNNGTGG	2 cut(s)	934, 969
CviAII	CATG	3 cut(s)	269, 309, 347
CviQI	GTAC	2 cut(s)	23, 863
DdeI	CTNAG	2 cut(s)	374, 682
DpnI	GATC	8 cut(s)	33, 47, 442, 599, 651, 701, 744, 1030
DpnII	GATC	8 cut(s)	31, 45, 440, 597, 649, 699, 742, 1028
Eam1104I	CTCTTC	2 cut(s)	549, 690
EarI	CTCTTC	2 cut(s)	549, 690
Eco147I	AGGCCT	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	27
Eco91I	GGTNACC	1 cut(s)	940
EcoNI	CCTNNNNNAGG	1 cut(s)	582
EcoO65I	GGTNACC	1 cut(s)	940
Esp3I	CGTCTC	1 cut(s)	822
FaeI	CATG	3 cut(s)	272, 312, 350
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FatI	CATG	3 cut(s)	268, 308, 346
FauI	CCCGC	2 cut(s)	125, 757
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	273, 714, 793
FokI	GGATG	3 cut(s)	164, 233, 1043
Fsp4HI	GCNGC	3 cut(s)	273, 714, 793
FspBI	CTAG	3 cut(s)	29, 854, 921
GlaI	GCGC	1 cut(s)	911
GluI	GCNGC	3 cut(s)	273, 714, 793
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	179
HgaI	GACGC	1 cut(s)	741
HhaI	GCGC	1 cut(s)	912
Hin1I	GRCGYC	1 cut(s)	304
Hin1II	CATG	3 cut(s)	272, 312, 350
Hin6I	GCGC	1 cut(s)	910
HinP1I	GCGC	1 cut(s)	910
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	5 cut(s)	76, 327, 868, 994, 1079
HphI	GGTGA	4 cut(s)	106, 560, 737, 952
Hpy166II	GTNNAC	3 cut(s)	64, 94, 863
Hpy188I	TCNGA	7 cut(s)	188, 220, 322, 445, 465, 602, 685
Hpy188III	TCNNGA	4 cut(s)	29, 173, 482, 500
Hpy8I	GTNNAC	3 cut(s)	64, 94, 863
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	952, 1060
HpyCH4IV	ACGT	3 cut(s)	234, 304, 990
HpyCH4V	TGCA	5 cut(s)	155, 272, 795, 1049, 1056
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 719, 758
HpyF3I	CTNAG	2 cut(s)	374, 682
HpySE526I	ACGT	3 cut(s)	234, 304, 990
Hsp92I	GRCGYC	1 cut(s)	304
Hsp92II	CATG	3 cut(s)	272, 312, 350
HspAI	GCGC	1 cut(s)	910
Kzo9I	GATC	8 cut(s)	31, 45, 440, 597, 649, 699, 742, 1028
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	5 cut(s)	65, 131, 158, 371, 997
Lsp1109I	GCAGC	2 cut(s)	284, 779
LweI	GCATC	3 cut(s)	142, 388, 1065
MaeI	CTAG	3 cut(s)	29, 854, 921
MaeII	ACGT	3 cut(s)	234, 304, 990
MaeIII	GTNAC	3 cut(s)	531, 940, 986
MalI	GATC	8 cut(s)	33, 47, 442, 599, 651, 701, 744, 1030
MboI	GATC	8 cut(s)	31, 45, 440, 597, 649, 699, 742, 1028
MboII	GAAGA	7 cut(s)	312, 450, 465, 563, 566, 707, 1028
MflI	RGATCY	2 cut(s)	440, 699
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	2 cut(s)	219, 896
MnlI	CCTC	8 cut(s)	142, 169, 190, 375, 587, 854, 907, 917
MseI	TTAA	7 cut(s)	54, 264, 392, 456, 798, 900, 1010
MslI	CAYNNNNRTG	2 cut(s)	89, 345
MspCI	CTTAAG	1 cut(s)	263
MvnI	CGCG	2 cut(s)	752, 912
MwoI	GCNNNNNNNGC	3 cut(s)	137, 719, 758
NdeII	GATC	8 cut(s)	31, 45, 440, 597, 649, 699, 742, 1028
NlaIII	CATG	3 cut(s)	272, 312, 350
NmuCI	GTSAC	1 cut(s)	940
NspI	RCATGY	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	272
PceI	AGGCCT	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PfeI	GAWTC	4 cut(s)	76, 868, 994, 1079
PkrI	GCNGC	3 cut(s)	274, 715, 794
Ple19I	CGATCG	1 cut(s)	1031
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PspEI	GGTNACC	1 cut(s)	940
PsuI	RGATCY	2 cut(s)	440, 699
PvuI	CGATCG	1 cut(s)	1031
RsaI	GTAC	2 cut(s)	24, 864
RsaNI	GTAC	2 cut(s)	23, 863
RseI	CAYNNNNRTG	2 cut(s)	89, 345
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	7 cut(s)	54, 264, 392, 456, 798, 900, 1010
SatI	GCNGC	3 cut(s)	273, 714, 793
Sau3AI	GATC	8 cut(s)	31, 45, 440, 597, 649, 699, 742, 1028
SchI	GAGTC	1 cut(s)	336
SfaNI	GCATC	3 cut(s)	142, 388, 1065
SmiMI	CAYNNNNRTG	2 cut(s)	89, 345
SmlI	CTYRAG	2 cut(s)	263, 723
SmoI	CTYRAG	2 cut(s)	263, 723
SphI	GCATGC	1 cut(s)	272
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	4 cut(s)	118, 713, 750, 965
SspI	AATATT	1 cut(s)	936
SspMI	CTAG	3 cut(s)	29, 854, 921
StuI	AGGCCT	1 cut(s)	179
TaiI	ACGT	3 cut(s)	237, 307, 993
TaqI	TCGA	4 cut(s)	44, 63, 483, 499
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	4 cut(s)	76, 868, 994, 1079
Tru1I	TTAA	7 cut(s)	54, 264, 392, 456, 798, 900, 1010
Tru9I	TTAA	7 cut(s)	54, 264, 392, 456, 798, 900, 1010
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	940
TseI	GCWGC	2 cut(s)	272, 792
Tsp45I	GTSAC	1 cut(s)	940
TspDTI	ATGAA	4 cut(s)	270, 329, 522, 986
TspGWI	ACGGA	1 cut(s)	880
TspRI	CASTG	1 cut(s)	18
Vha464I	CTTAAG	1 cut(s)	263
XagI	CCTNNNNNAGG	1 cut(s)	582
XapI	RAATTY	2 cut(s)	258, 839
XbaI	TCTAGA	1 cut(s)	28
XceI	RCATGY	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	3 cut(s)	29, 854, 921
ZraI	GACGTC	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.