MD09G1270700.v1.1

Condensin complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0006579
Physical Location & Seq
Forward (+)
34497842 .. 34505045
7204 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1270700.v1.1.491

Sequence Viewer

Length: 3096 bp
ATGGCGGAACCGACAGCGGAAGACGAGAAGCCCTTGATGCTCAAAATCGCTCAAATCTTCGACGACGCTCGGACTTCCAACGCCAGCCACAACCGCAAGCTCAAGGAGCTCTCCGCCCTCCGCTCAAAAACGTCCTCCTCCTCCCTCTTCTTCTCTGCATTCTGCAAAACTCTACTTCCCCTCTTCTCCTTCCAGAGGCGTACTGCCTCCGCCGAACGCATTGTCCTGTTCATCTCCGCCTTTGCAACTGCCCGAGACTCCGGCAATGTCTCCCAATCCGACGCTTTCTTGGAGGACTTCCTCAGGTTCCTTTTACCGGCGTCCTCCGCCGCTAAAAAGACTTCGAGGTCCCGAGCCTGCCAGATTGTTTCTGAGATCATCGTGCAATTACCAGATGATGCAGAAGTAAGCAGTGATCTCTGGGATGAAGTAATAGATTGTATGAAGTTGCGTGCAGGGGACAAGGTCCCTGTAATCCGTACATGTGCAGTTAGAGCTCTTTCACGTTTTGCAAGTGATTGCGAGAACAGTGATATCCTTGATCTATTTGTTGAGATGCTTCCTGCAGAGCAAACTGTGGAGGTTCGGAAGGCAATTGTGCTATCTTTGCCTCCTTCAAATGCAACTGCACAAGCAATCGTTGATTGTACATTAGATGTCAGTGAATCAGTGCGCAAAGCAGCATACCGTGTTCTAGCTAGTAAATTTCCTCTTCAAAGTCTCAGTATCAAGCATAGAACATTAATTCTTCAGAGGGGACTTGCTGATCGTTCTGTTGCTGTTTCAAATGAGTGTCTTAAGTTAATGAAAGATGAATGGTTAAATAAGTGCTGCAAAGGAGACCCTTTAGAACTACTCAAGTATCTTGATGTTGAGACCTATGAACTGGTTGGAGAGTCTGTGGCTTCTGCATTGTTAAAAGCTGGTTTGATTAAATTACATGATGGTGAAAGTATTCAGCACTACATATCATCCACGGATGAGAGAATTGAAGGTGATTCAGCACGTTGCACTCCAAGCATTCAACTAATGGAAGCAGAGGTTTCTCTTTATTGGAGGATGATATGTAGGCACCTGCAGATGGAAGCACAAGCAAAAGGCTCTGACGCTGCTTCTACAATGGGCACTGAAGCAGCAGTATATGCAGCGGAAGCTTCAGACACCAGTGACCTTCTTGAGAAAATTCTGCCAGCAATAATTTCTGATTATATAGATCTAGTCAAAGCTCACATTGATGCTGGACCAAATTATCGCTTTGCATGTCGGCAGCTACTATTGCTTGGTGCAATGCTTGATTTTTCAGATGTTACAAACAGGAAGGTTGCTAGTAAATTTGTGCTGGAACTGCTGCATAAGCCTTTTGACCATGAAGTTGATGAGTATGGAAACATGGTTGTTATTGGAGATGGAATAAATCTTGGTGGTGATAGAGATTGGGCTGAAGCGGTGTTTGGGTTAGTAAGCAGGGTGCATGCTGCTAGTGGTGAGTTTGAAGAAGTTGTTCTTGGCGTTGTAGAGGAACTTGCTTGTCCTTGCAGGGAAAGAACAGCGGATTTTCTGCAGTGGATGCATTGCCTTGCTGTTTTCGGCCTTTGCTTGGAGAAGGCAAGGTCATATCATTGGATTCAAGGGAAAGCTATTGAGCCTACTGAACTACTGCAATCGTTATTGCTTCCAGCGGCAAAACATTCTCACTTGGAAGTCCAAAGGATTGCAGTCAGGTGTCTTGGGCTTTTTGGATTGTTAGAGAAAAAGCCAAGCCAGGAACTAGTAAAGCAGTTAAAGCTTTCATTTATTAAGGGACCAGCTCCAATTAGCATAGTTGCTTGCAAGGCATTATTTGATCTTGGGATGTGGCATAATCCTCAGGAAGTTGATAGGGTGACAGGCCTGGACATTTCGTCCCAACTTCAAGATTATGATGTTACTTCTAGTCCCTTAAACCTTTCTGATACAGATGGGATATCGAACATTAAGTTGCTTGATCTTTTGTACGCTGGAATTATGAAAGATGATTGGGACAATTCTCTAGCAAGTGATGAAAATGAGTCCGTTCATTGCGCTCTGGGTGAGGGGTTTGCAAAAATTCTTCTTCTAAGTGAGAACTACCAAGGCATGCCAGCTTCTTTACATCCTTTGTTTTTATACAAGCTCATTACCTTGTACTTCAGTAACGAATCTAAAGACTTGCAGAGGTTGAAACAGTGCTTATCTGTGTTCTTTGAGAATTACCCTTCCCTCGCAGCTAATCACAAGAAGTGTATAGCCAAGGCTTTCATTCCAGTCATGCGTTCTATGTGGCCGGGTATCAATGGCACCGCTGGAGGTTCTGCTTCCGTGGTTTCTAATATGCGTAAGCGTGCAGTCCAAGTATCACGTTTTATGCTGCACATCATGCAGGCTCCCTTATATAAAAATGGGGCAGAGGAAGGAAATGATACTGGGGAACTACCAGAAGTGGTAGAAGAACATCCACTTGAGTGTGGTGAGGAGGGGCTTGCCATACGCATAGCCACAGAGGTTGCTACTTTCCGTTCAAAGAAGACACCTGCAGAGAAGGCATATGTTTCAGCATTATGCAGAGTACTTGTCATGCTCCATTTCCGGACATCAGAGCAAGAGGCAATCCAGTTAATGAGGAGGCTTTTAATTCGTGTGGTAGAATCTGTATTGGCAGAGAAGGATCTTGTCAAAGAGTTAAGGCGGATGGCTGACCATCTCAAGGCACAAGACAGGCATCCAGATCAGGAAATGTCGCAAGATCAAGCTAATCTTATATTTGGTAAGTTAGAACTAGACTTCAACTTGGATTTCAATGTTTCTGTTGAAATGCCACAGACCCCAGCTCCTCGCTCCGCTAAACCAACCCGTTCTAGAAAACGAGTGACACTTGAAGAGTCATCTTCCGATGATGAAGATAGCTCGCCCACCTCTGTTGTCCCTAATAATCTTGGCACAATAAGCGCTCGCTCACAGAGAGCAAGCAAGACCGCAGCCCTATCCAAGATGACAGCTAATGAAGCCTTGAGGATCGGCGAAGATGATGAAGAGGAAGAAGGCTCGGAGGTTACATCTGATGAAGATGGATCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cnd3

Protein Analysis

1032

Amino Acids

114.19

Weight (kDa)

5.25

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cnd3 PF12719 524 - 868 6.2e-52 Nuclear condensing complex subunits, C-term domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1083, 2557
AasI GACNNNNNNGTC 1 cut(s) 346
Acc16I TGCGCA 1 cut(s) 674
Acc36I ACCTGC 2 cut(s) 1083, 2557
AccB1I GGYRCC 2 cut(s) 1071, 2315
AccBSI CCGCTC 1 cut(s) 123
AccIII TCCGGA 1 cut(s) 2604
AclWI GGATC 3 cut(s) 2691, 3038, 3094
AcoI YGGCCR 1 cut(s) 2300
AcsI RAATTY 4 cut(s) 704, 1182, 1331, 2085
AcuI CTGAAG 5 cut(s) 734, 1140, 1149, 1461, 2152
AcyI GRCGYC 1 cut(s) 320
AfaI GTAC 6 cut(s) 202, 481, 649, 1994, 2165, 2586
AfeI AGCGCT 1 cut(s) 2965
AfiI CCNNNNNNNGG 5 cut(s) 195, 316, 1081, 1597, 2722
AflII CTTAAG 1 cut(s) 797
AflIII ACRYGT 1 cut(s) 482
AhdI GACNNNNNGTC 1 cut(s) 1900
AhlI ACTAGT 1 cut(s) 1768
AjnI CCWGG 2 cut(s) 1761, 1890
AjuI GAANNNNNNNTTGG 4 cut(s) 1434, 1466, 1488, 1520
AleI CACNNNNGTG 1 cut(s) 2479
AloI GAACNNNNNNTCC 2 cut(s) 207, 239
Alw21I GWGCWC 2 cut(s) 111, 499
Alw26I GTCTC 5 cut(s) 249, 274, 725, 834, 869
AlwI GGATC 3 cut(s) 2691, 3038, 3094
Ama87I CYCGRG 2 cut(s) 252, 351
Aor13HI TCCGGA 1 cut(s) 2604
Aor51HI AGCGCT 1 cut(s) 2965
AoxI GGCC 3 cut(s) 1588, 1888, 2300
ApoI RAATTY 4 cut(s) 704, 1182, 1331, 2085
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AseI ATTAAT 1 cut(s) 743
Asp700I GAANNNNTTC 2 cut(s) 954, 1500
AspLEI GCGC 3 cut(s) 675, 2063, 2966
AspS9I GGNCC 4 cut(s) 348, 466, 1241, 1802
AsuC2I CCSGG 1 cut(s) 2304
AsuHPI GGTGA 7 cut(s) 959, 1007, 1436, 1496, 1894, 2081, 2498
AvaI CYCGRG 2 cut(s) 252, 351
AvaII GGWCC 4 cut(s) 348, 466, 1241, 1802
AxyI CCTNAGG 2 cut(s) 302, 1866
BaeGI GKGCMC 1 cut(s) 1127
BaeI ACNNNNGTAYC 2 cut(s) 845, 878
BanI GGYRCC 2 cut(s) 1071, 2315
BanII GRGCYC 2 cut(s) 111, 499
BbsI GAAGAC 2 cut(s) 27, 2549
Bbv12I GWGCWC 2 cut(s) 111, 499
BccI CCATC 7 cut(s) 938, 1075, 1400, 1952, 2701, 2724, 3077
BciT130I CCWGG 2 cut(s) 1763, 1892
BcnI CCSGG 1 cut(s) 2304
BcoDI GTCTC 5 cut(s) 249, 274, 725, 834, 869
BcuI ACTAGT 1 cut(s) 1768
BfmI CTRYAG 4 cut(s) 564, 1076, 1559, 2550
BfoI RGCGCY 1 cut(s) 2967
BfrI CTTAAG 1 cut(s) 797
BfuAI ACCTGC 2 cut(s) 1083, 2557
BglII AGATCT 1 cut(s) 1213
BmcAI AGTACT 1 cut(s) 2586
Bme1390I CCNGG 3 cut(s) 1763, 1892, 2304
Bme18I GGWCC 4 cut(s) 348, 466, 1241, 1802
BmeRI GACNNNNNGTC 1 cut(s) 1900
BmeT110I CYCGRG 2 cut(s) 252, 351
BmgT120I GGNCC 4 cut(s) 348, 466, 1241, 1802
BmiI GGNNCC 8 cut(s) 9, 308, 350, 468, 1073, 1803, 2317, 2403
BmrFI CCNGG 3 cut(s) 1763, 1892, 2304
BmrI ACTGGG 1 cut(s) 2451
BmsI GCATC 6 cut(s) 27, 388, 546, 1225, 1557, 2746
BmuI ACTGGG 1 cut(s) 2451
BpiI GAAGAC 2 cut(s) 27, 2549
BpmI CTGGAG 1 cut(s) 2343
BpuEI CTTGAG 6 cut(s) 86, 842, 1196, 2498, 2705, 3046
BpuMI CCSGG 1 cut(s) 2304
BsaHI GRCGYC 1 cut(s) 320
BsaI GGTCTC 2 cut(s) 834, 869
BsaJI CCNNGG 4 cut(s) 975, 2110, 2268, 2337
BsaWI WCCGGW 1 cut(s) 2604
BsaXI ACNNNNNCTCC 4 cut(s) 885, 915, 2830, 2860
Bsc4I CCNNNNNNNGG 5 cut(s) 195, 316, 1081, 1597, 2722
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 5 cut(s) 891, 1164, 2282, 2446, 2629
Bse21I CCTNAGG 2 cut(s) 302, 1866
Bse3DI GCAATG 4 cut(s) 271, 1293, 1570, 2056
BseAI TCCGGA 1 cut(s) 2604
BseBI CCWGG 2 cut(s) 1763, 1892
BseDI CCNNGG 4 cut(s) 975, 2110, 2268, 2337
BseLI CCNNNNNNNGG 5 cut(s) 195, 316, 1081, 1597, 2722
BseMI GCAATG 4 cut(s) 271, 1293, 1570, 2056
BseMII CTCAG 4 cut(s) 316, 363, 736, 1880
BseNI ACTGG 5 cut(s) 891, 1164, 2282, 2446, 2629
BseRI GAGGAG 5 cut(s) 127, 130, 2504, 2653, 2838
BseSI GKGCMC 1 cut(s) 1127
BseYI CCCAGC 1 cut(s) 2842
BsgI GTGCAG 5 cut(s) 474, 507, 612, 2372, 2382
BshFI GGCC 3 cut(s) 1590, 1890, 2302
BshNI GGYRCC 2 cut(s) 1071, 2315
BsiHKAI GWGCWC 2 cut(s) 111, 499
BsiHKCI CYCGRG 2 cut(s) 252, 351
BsiSI CCGG 4 cut(s) 261, 317, 2303, 2605
BslFI GGGAC 9 cut(s) 334, 452, 473, 771, 1815, 1888, 1920, 2033, 2924
BslI CCNNNNNNNGG 5 cut(s) 195, 316, 1081, 1597, 2722
BsmAI GTCTC 5 cut(s) 249, 274, 725, 834, 869
BsmFI GGGAC 9 cut(s) 334, 452, 473, 771, 1815, 1888, 1920, 2033, 2924
BsmI GAATGC 2 cut(s) 158, 1020
BsnI GGCC 3 cut(s) 1590, 1890, 2302
Bso31I GGTCTC 2 cut(s) 834, 869
BsoBI CYCGRG 2 cut(s) 252, 351
Bsp1286I GDGCHC 3 cut(s) 111, 499, 1127
Bsp13I TCCGGA 1 cut(s) 2604
Bsp1407I TGTACA 1 cut(s) 647
BspANI GGCC 3 cut(s) 1590, 1890, 2302
BspCNI CTCAG 4 cut(s) 315, 364, 735, 1879
BspEI TCCGGA 1 cut(s) 2604
BspLI GGNNCC 8 cut(s) 9, 308, 350, 468, 1073, 1803, 2317, 2403
BspMAI CTGCAG 4 cut(s) 568, 1080, 1563, 2554
BspMI ACCTGC 2 cut(s) 1083, 2557
BspPI GGATC 3 cut(s) 2691, 3038, 3094
BspT107I GGYRCC 2 cut(s) 1071, 2315
BspTI CTTAAG 1 cut(s) 797
BspTNI GGTCTC 2 cut(s) 834, 869
BsrBI CCGCTC 1 cut(s) 123
BsrDI GCAATG 4 cut(s) 271, 1293, 1570, 2056
BsrFI RCCGGY 1 cut(s) 316
BsrGI TGTACA 1 cut(s) 647
BsrI ACTGG 5 cut(s) 891, 1164, 2282, 2446, 2629
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 4 cut(s) 975, 2110, 2268, 2337
BssNI GRCGYC 1 cut(s) 320
BssT1I CCWWGG 2 cut(s) 2110, 2268
Bst2UI CCWGG 2 cut(s) 1763, 1892
Bst4CI ACNGT 4 cut(s) 530, 577, 689, 2205
Bst6I CTCTTC 5 cut(s) 152, 188, 717, 2889, 3042
BstACI GRCGYC 1 cut(s) 320
BstAFI CTTAAG 1 cut(s) 797
BstAPI GCANNNNNTGC 3 cut(s) 1142, 1567, 2395
BstAUI TGTACA 1 cut(s) 647
BstDEI CTNAG 5 cut(s) 302, 372, 722, 1866, 2096
BstDSI CCRYGG 2 cut(s) 975, 2337
BstENI CCTNNNNNAGG 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 2967
BstHHI GCGC 3 cut(s) 675, 2063, 2966
BstMAI GTCTC 5 cut(s) 249, 274, 725, 834, 869
BstNI CCWGG 2 cut(s) 1763, 1892
BstNSI RCATGY 4 cut(s) 486, 1263, 1475, 2119
BstSCI CCNGG 3 cut(s) 1761, 1890, 2302
BstSFI CTRYAG 4 cut(s) 564, 1076, 1559, 2550
BstSLI GKGCMC 1 cut(s) 1127
BstV2I GAAGAC 2 cut(s) 27, 2549
BstX2I RGATCY 3 cut(s) 1213, 2683, 3086
BstYI RGATCY 3 cut(s) 1213, 2683, 3086
Bsu36I CCTNAGG 2 cut(s) 302, 1866
BsuRI GGCC 3 cut(s) 1590, 1890, 2302
BtgI CCRYGG 2 cut(s) 975, 2337
BtsI GCAGTG 2 cut(s) 418, 1568
BtsIMutI CAGTG 8 cut(s) 418, 535, 667, 675, 1125, 1171, 1568, 2210
BveI ACCTGC 2 cut(s) 1083, 2557
CfoI GCGC 3 cut(s) 675, 2063, 2966
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 4 cut(s) 348, 466, 1241, 1802
CseI GACGC 4 cut(s) 74, 290, 309, 1115
Csp6I GTAC 6 cut(s) 201, 480, 648, 1993, 2164, 2585
CspCI CAANNNNNGTGG 4 cut(s) 2503, 2538, 2917, 2952
CviQI GTAC 6 cut(s) 201, 480, 648, 1993, 2164, 2585
DdeI CTNAG 5 cut(s) 302, 372, 722, 1866, 2096
DrdI GACNNNNNNGTC 1 cut(s) 346
DriI GACNNNNNGTC 1 cut(s) 1900
DseDI GACNNNNNNGTC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 2300
Eam1104I CTCTTC 5 cut(s) 152, 188, 717, 2889, 3042
Eam1105I GACNNNNNGTC 1 cut(s) 1900
EarI CTCTTC 5 cut(s) 152, 188, 717, 2889, 3042
EciI GGCGGA 6 cut(s) 20, 103, 199, 226, 316, 2719
Ecl136II GAGCTC 2 cut(s) 109, 497
Eco130I CCWWGG 2 cut(s) 2110, 2268
Eco147I AGGCCT 1 cut(s) 1890
Eco24I GRGCYC 2 cut(s) 111, 499
Eco31I GGTCTC 2 cut(s) 834, 869
Eco32I GATATC 2 cut(s) 535, 1965
Eco47I GGWCC 4 cut(s) 348, 466, 1241, 1802
Eco47III AGCGCT 1 cut(s) 2965
Eco53kI GAGCTC 2 cut(s) 109, 497
Eco57I CTGAAG 5 cut(s) 734, 1140, 1149, 1461, 2152
Eco81I CCTNAGG 2 cut(s) 302, 1866
Eco88I CYCGRG 2 cut(s) 252, 351
EcoICRI GAGCTC 2 cut(s) 109, 497
EcoNI CCTNNNNNAGG 1 cut(s) 193
EcoO109I RGGNCCY 2 cut(s) 348, 466
EcoRII CCWGG 2 cut(s) 1761, 1890
EcoRV GATATC 2 cut(s) 535, 1965
EcoT14I CCWWGG 2 cut(s) 2110, 2268
EcoT22I ATGCAT 1 cut(s) 1572
EcoT38I GRGCYC 2 cut(s) 111, 499
ErhI CCWWGG 2 cut(s) 2110, 2268
FalI AAGNNNNNCTT 4 cut(s) 1488, 1520, 2757, 2789
FaqI GGGAC 9 cut(s) 334, 452, 473, 771, 1815, 1888, 1920, 2033, 2924
FauNDI CATATG 1 cut(s) 2563
FriOI GRGCYC 2 cut(s) 111, 499
FspI TGCGCA 1 cut(s) 674
GlaI GCGC 3 cut(s) 674, 2062, 2965
GsaI CCCAGC 1 cut(s) 2846
GsuI CTGGAG 1 cut(s) 2343
HaeII RGCGCY 1 cut(s) 2967
HaeIII GGCC 3 cut(s) 1590, 1890, 2302
HapII CCGG 4 cut(s) 261, 317, 2303, 2605
HgaI GACGC 4 cut(s) 74, 290, 309, 1115
HhaI GCGC 3 cut(s) 675, 2063, 2966
Hin1I GRCGYC 1 cut(s) 320
Hin6I GCGC 3 cut(s) 673, 2061, 2964
HinP1I GCGC 3 cut(s) 673, 2061, 2964
HindIII AAGCTT 2 cut(s) 1152, 1784
HinfI GANTC 9 cut(s) 257, 665, 896, 998, 1624, 2048, 2177, 2663, 2897
HpaII CCGG 4 cut(s) 261, 317, 2303, 2605
HphI GGTGA 7 cut(s) 959, 1007, 1436, 1496, 1894, 2081, 2498
Hpy99I CGWCG 3 cut(s) 65, 68, 284
HpyCH4III ACNGT 4 cut(s) 530, 577, 689, 2205
HpyCH4IV ACGT 4 cut(s) 131, 505, 1006, 2377
HpyF3I CTNAG 5 cut(s) 302, 372, 722, 1866, 2096
HpySE526I ACGT 4 cut(s) 131, 505, 1006, 2377
Hsp92I GRCGYC 1 cut(s) 320
HspAI GCGC 3 cut(s) 673, 2061, 2964
Kpn2I TCCGGA 1 cut(s) 2604
LmnI GCTCC 6 cut(s) 106, 1813, 2407, 2601, 2851, 2858
LweI GCATC 6 cut(s) 27, 388, 546, 1225, 1557, 2746
MaeII ACGT 4 cut(s) 131, 505, 1006, 2377
MaeIII GTNAC 7 cut(s) 1166, 1306, 1882, 1924, 2171, 2884, 3067
MbiI CCGCTC 1 cut(s) 123
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 3 cut(s) 1213, 2683, 3086
MhlI GDGCHC 3 cut(s) 111, 499, 1127
MlyI GAGTC 4 cut(s) 251, 905, 2057, 2906
MmeI TCCRAC 3 cut(s) 102, 303, 871
Mph1103I ATGCAT 1 cut(s) 1572
MroI TCCGGA 1 cut(s) 2604
MroXI GAANNNNTTC 2 cut(s) 954, 1500
MslI CAYNNNNRTG 3 cut(s) 945, 1233, 2479
MspA1I CMGCKG 5 cut(s) 17, 1148, 1550, 1679, 2321
MspCI CTTAAG 1 cut(s) 797
MspI CCGG 4 cut(s) 261, 317, 2303, 2605
MspR9I CCNGG 3 cut(s) 1763, 1892, 2304
MunI CAATTG 1 cut(s) 594
Mva1269I GAATGC 2 cut(s) 158, 1020
MvaI CCWGG 2 cut(s) 1763, 1892
NciI CCSGG 1 cut(s) 2304
NdeI CATATG 1 cut(s) 2563
NlaIV GGNNCC 8 cut(s) 9, 308, 350, 468, 1073, 1803, 2317, 2403
NmuCI GTSAC 3 cut(s) 1166, 1882, 2884
NsbI TGCGCA 1 cut(s) 674
NsiI ATGCAT 1 cut(s) 1572
NspI RCATGY 4 cut(s) 486, 1263, 1475, 2119
OliI CACNNNNGTG 1 cut(s) 2479
PaeI GCATGC 2 cut(s) 1475, 2119
PaqCI CACCTGC 2 cut(s) 1083, 2557
PceI AGGCCT 1 cut(s) 1890
PciI ACATGT 1 cut(s) 482
PctI GAATGC 2 cut(s) 158, 1020
PdmI GAANNNNTTC 2 cut(s) 954, 1500
PfeI GAWTC 5 cut(s) 665, 998, 1624, 2177, 2663
PflFI GACNNNGTC 1 cut(s) 464
PleI GAGTC 4 cut(s) 251, 904, 2056, 2905
PpsI GAGTC 4 cut(s) 251, 904, 2056, 2905
PpuMI RGGWCCY 2 cut(s) 348, 466
PscI ACATGT 1 cut(s) 482
PshBI ATTAAT 1 cut(s) 743
Psp124BI GAGCTC 2 cut(s) 111, 499
Psp5II RGGWCCY 2 cut(s) 348, 466
Psp6I CCWGG 2 cut(s) 1761, 1890
PspFI CCCAGC 1 cut(s) 2842
PspGI CCWGG 2 cut(s) 1761, 1890
PspN4I GGNNCC 8 cut(s) 9, 308, 350, 468, 1073, 1803, 2317, 2403
PspPI GGNCC 4 cut(s) 348, 466, 1241, 1802
PspPPI RGGWCCY 2 cut(s) 348, 466
PstI CTGCAG 4 cut(s) 568, 1080, 1563, 2554
PsuI RGATCY 3 cut(s) 1213, 2683, 3086
PsyI GACNNNGTC 1 cut(s) 464
RsaI GTAC 6 cut(s) 202, 481, 649, 1994, 2165, 2586
RsaNI GTAC 6 cut(s) 201, 480, 648, 1993, 2164, 2585
RseI CAYNNNNRTG 3 cut(s) 945, 1233, 2479
SacI GAGCTC 2 cut(s) 111, 499
Sau96I GGNCC 4 cut(s) 348, 466, 1241, 1802
ScaI AGTACT 1 cut(s) 2586
SchI GAGTC 4 cut(s) 251, 905, 2057, 2906
ScrFI CCNGG 3 cut(s) 1763, 1892, 2304
SduI GDGCHC 3 cut(s) 111, 499, 1127
SfaNI GCATC 6 cut(s) 27, 388, 546, 1225, 1557, 2746
SfcI CTRYAG 4 cut(s) 564, 1076, 1559, 2550
SinI GGWCC 4 cut(s) 348, 466, 1241, 1802
SmiMI CAYNNNNRTG 3 cut(s) 945, 1233, 2479
SmlI CTYRAG 7 cut(s) 101, 797, 857, 1175, 2477, 2720, 3025
SmoI CTYRAG 7 cut(s) 101, 797, 857, 1175, 2477, 2720, 3025
SpeI ACTAGT 1 cut(s) 1768
SphI GCATGC 2 cut(s) 1475, 2119
SseBI AGGCCT 1 cut(s) 1890
SstI GAGCTC 2 cut(s) 111, 499
StuI AGGCCT 1 cut(s) 1890
StyD4I CCNGG 3 cut(s) 1761, 1890, 2302
StyI CCWWGG 2 cut(s) 2110, 2268
TaaI ACNGT 4 cut(s) 530, 577, 689, 2205
TaiI ACGT 4 cut(s) 134, 508, 1009, 2380
TaqI TCGA 3 cut(s) 60, 344, 1967
TatI WGTACW 3 cut(s) 647, 2163, 2584
TauI GCSGC 2 cut(s) 332, 1682
TfiI GAWTC 5 cut(s) 665, 998, 1624, 2177, 2663
TscAI CASTG 8 cut(s) 418, 535, 667, 675, 1132, 1171, 1568, 2210
TseFI GTSAC 3 cut(s) 1166, 1882, 2884
Tsp45I GTSAC 3 cut(s) 1166, 1882, 2884
TspGWI ACGGA 5 cut(s) 467, 992, 2041, 2326, 2522
TspRI CASTG 8 cut(s) 418, 535, 667, 675, 1132, 1171, 1568, 2210
Tth111I GACNNNGTC 1 cut(s) 464
Vha464I CTTAAG 1 cut(s) 797
VpaK11BI GGWCC 4 cut(s) 348, 466, 1241, 1802
VspI ATTAAT 1 cut(s) 743
XagI CCTNNNNNAGG 1 cut(s) 193
XapI RAATTY 4 cut(s) 704, 1182, 1331, 2085
XbaI TCTAGA 1 cut(s) 2873
XceI RCATGY 4 cut(s) 486, 1263, 1475, 2119
XmnI GAANNNNTTC 2 cut(s) 954, 1500
ZrmI AGTACT 1 cut(s) 2586
Zsp2I ATGCAT 1 cut(s) 1572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.