Rroxscaffold_6G00393110

Condensin complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0006579
Physical Location & Seq
Forward (+)
12948455 .. 12957240
8786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393110.1

Sequence Viewer

Length: 2871 bp
ATGCTCAGAATCGCTCAAATCCTAGACGAGGCTCGCGCCTCCAACGCCATCCACAACCGAAAATGCAAGGGAGCTCTCCGCCCTCCGCTCCAAAACGGCGTCTTCCATCTTCACATCCTTCTGCAAAAACCCTACTCCCGCTGTTCGCCTTCCAGAGACGCTCTGCCTCCGCCGAGCGCATCGTTCGCTTCGTCTCCGCCTTCGCCACCGGCAGAGACCCCTGACCAAAGCGACGCTGCTTTCTTGGATGAAATTCCTCAGATCATTATGCAATTACCGGATGATGCAGAATTAGGGGCGCTTTCACGTTTTGCAAGTGATTGCGAGAACAGTGATATCGTTGATTTATTTCTTGAGATGCTTCCTGTAGAACAAATTGTGGAGGTTCGGAAGACAATAGTGCTCTCTCTACCTCCTTCAAATGCAACTGCACAAGCAATCATTGATTGCACATTAGATGTCAGTGAATCAGTGCGAAAAGCAGCATACTGTGTTCTAGCCAGTAAATTTCCTCTTCAAAGCCTCAGTATCAAGCATAGAACATTAATTCTTCGAAGGGGACTTGCCGATCGTTCTCTTGCTGTTTCAAAGGAGTGTCTTAAATTAATGAAAGATGAATGGCTAAACAAGTGCTGCAATGGAGATCCTTTAGTACTTCTCAAGTATCTTGATGTGGAAACCTATGAAATGGTCGGGGAGTCTGTAGCAGGGGCCTTGTTAAAAGGTGGTGAAATTAGAGTACCTGAAGGTCAAAGTATCCGGCAGTACATATTGTCTATCAGTGAAAGTGCTGAAGAAGACTCAGAACATTGCACACCAAACATCAAACTGATGGAAGCGGAGGTTGCACTTTACTGGAGGATGATATGTAGGCACCTGCAGATTGAGGCACAAGAGAAAGGCTCTGATGCTGCTTCTACTATGGGCACCGAGGCAGCAGTATATGCTGCAGAAGCTACAGACAACAATGACCTTCTTGAGAGAATCCTGCCAGCAACAATTTCTGATTATATAGATTTAGTCAAATCTCACATTGATGCTGGTTCCAATTATCGCTTTGCATGTCGACAGCTATTATTGCTTGGTGCAATGCTTGATTTTTCGGATACATCAAACAGGAAGGTTGCTAGTACATTTGTGCTGGAACTGCTCCATAAGCCTTTCGATCATGAAGTAGATGAGTATGGGAACATGGTTGTTATAGGAGATGGAATAAATCTTGGTGGTGATCGAGATTGGTCTGATGCTGTGTATGGGTTGGCAAGCAAGGTGCATGCTGCCAGTGGTGAATTTGAAGAAGTTGTTCTTAGGGTTGTAGAGGAGCTCGCTCTCCCTTGCAGGGAGAGAACAGCAGATTTTATGCAGTGGATGCACTGTCTTGCTGTTTTTGGCCTTTGCTTAGAGAAGGCAAAATCACATCAGTCAATCAAAGGGAGAGCAATTGAACCTGTTGAACTACTGCAATCTCTGTTGCTTCCGGCGGCAAAGCATTCTCACTTGGATGTGCAGAGGATTGCAGTTAGGTGCCTAGGGCTTTTTGGGTTGTTAGAGAAAAGGCCCAGTGAGGAACTAGTAAAGCAGTTAAAGCTTTCTTTTGTTAAGGGCCCTGCTCCAATTAGCATAGTGGCTTGTAAGGCATTGTTTGATCTTGGGATGTGGCATCAGCCTCAGGAAGTTGATAGGACTGTGGGTCAGAACATGTCATCACAATTTCAAGACTACGGGATGACTTCTAGTCCCTTAGACATTTCTGATATGGATGGGAACTCGAATCTTAAATTGCTTGATCTTTTGTATGCTGGACTTCTTAAGGATGATTGGGACAATTCTGTAGCTAGTGAAGAGAATGAGTCTGTTCAAGGTGCTCTTGGGGAGGGCTTTGCAAAAATTCTTCTTCTAAGTGAGAATTACCAAAGCATACCTGCTTGTTTAAATCCTTTGCTTTTATCCAAGCTCATTACCTTGTACTTCAGCAATGAATCTAAGGAGTTGCAGAGGTTGAAACAGTGCTTATCTAAGTGTATATCCAAGGCTTTCATTCCTGTCATGCGTTCTATGTGGCCCGGTATCAATGGCAATGCTGGAGGTTCTGCGTCTGTGGTGTCTACTATGCGTAAACGTGCAGTCCAAGTATCACGTTTCATGTTGCAGATGGTCCAGGCTCCTCTATATGCAAAGGAGACTGAGGATGACAGAAACACTAGGGACCAACCAGAAGTTATAGATGGTACCGTGGAACCTCCACTTGAGAGTGGGGAGGAAGGGCTTGCAATAAGCATAGCCACAGAGGTGGCAGCCTTCCCTACAAAGAAGATTCCTGCAGAGCGGTCATATGTGTCAGCACTATGTAGAATACTTGTTTTACTCCAATTTCGGGTATCAGAGCAAGGAGCAATCCAGTTAATGAGGAGGCTTTTAGTTCGTGTGGCTGAATCTGTATTGGCAGAGAAAGATCTTGTGAAGGAGTTGAGGCGAATGGCTGACCGTCTCAAGGCATTAGATAAACATCCTGACCTGGAAATATCACAAGATCAAGCTAATCTTATATTTGGAAGGTTAGAACTAGACTTCAAATTGGAATCCCATATATCTGCTGAAATGCCGCAAACACCAGCTCCTTGCTCAAGCAGACCAACACGTACCAGAAGACGAATCAGGCAAGAGGAGGAATCTTCTGATGAAGATAGTTCGCCCACCTCTGTTGTTCCTAATAGTGTTGGCCCTATGAGCTCTCGTTCACAGAGAGCAAGCAAGACTGCAGCACTGACCAAGATAACGACTGCCATTACAGCCCCCACGATTGATGAAGATGATGAAGAGGAAGAAAGCTCAGGGGTGACATCTGATGACGATTCTGATGGCTCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cnd3

Protein Analysis

956

Amino Acids

105.45

Weight (kDa)

5.04

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cnd3 PF12719 458 - 791 6.1e-41 Nuclear condensing complex subunits, C-term domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 885
Acc36I ACCTGC 2 cut(s) 885, 1930
Acc65I GGTACC 1 cut(s) 2228
AccB1I GGYRCC 4 cut(s) 873, 926, 1524, 2228
AccBSI CCGCTC 2 cut(s) 88, 2326
AccI GTMKAC 2 cut(s) 1066, 2105
AccII CGCG 1 cut(s) 36
AciI CCGC 9 cut(s) 79, 86, 139, 170, 197, 839, 1481, 2326, 2603
AclWI GGATC 1 cut(s) 638
AcsI RAATTY 4 cut(s) 252, 506, 1289, 1887
AcuI CTGAAG 3 cut(s) 765, 813, 1954
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 7 cut(s) 654, 741, 767, 1132, 1967, 2230, 2641
AfiI CCNNNNNNNGG 4 cut(s) 28, 1339, 2374, 2491
AflII CTTAAG 1 cut(s) 1808
AflIII ACRYGT 2 cut(s) 1698, 2636
AhdI GACNNNNNGTC 2 cut(s) 1689, 1734
AhlI ACTAGT 1 cut(s) 1570
AjnI CCWGG 2 cut(s) 2157, 2514
AleI CACNNNNGTG 1 cut(s) 2288
Alw21I GWGCWC 5 cut(s) 76, 405, 1326, 1867, 2732
Alw26I GTCTC 5 cut(s) 150, 198, 209, 2174, 2492
AlwI GGATC 1 cut(s) 638
AoxI GGCC 6 cut(s) 711, 1390, 1556, 1603, 2060, 2719
ApaI GGGCCC 1 cut(s) 1607
ApeKI GCWGC 9 cut(s) 236, 482, 633, 911, 935, 947, 1277, 2294, 2759
ApoI RAATTY 4 cut(s) 252, 506, 1289, 1887
AseI ATTAAT 2 cut(s) 545, 605
Asp700I GAANNNNTTC 1 cut(s) 1302
Asp718I GGTACC 1 cut(s) 2228
AspA2I CCTAGG 1 cut(s) 1528
AspLEI GCGC 3 cut(s) 38, 179, 301
AspS9I GGNCC 8 cut(s) 711, 1557, 1603, 1604, 2061, 2155, 2206, 2720
AsuC2I CCSGG 1 cut(s) 2064
AsuHPI GGTGA 4 cut(s) 740, 1238, 1298, 2848
AsuII TTCGAA 1 cut(s) 553
AvaII GGWCC 2 cut(s) 2155, 2206
AvrII CCTAGG 1 cut(s) 1528
AxyI CCTNAGG 1 cut(s) 1668
BaeGI GKGCMC 2 cut(s) 929, 1607
BanI GGYRCC 4 cut(s) 873, 926, 1524, 2228
BanII GRGCYC 4 cut(s) 76, 1326, 1607, 2732
BbsI GAAGAC 4 cut(s) 94, 398, 804, 2653
Bbv12I GWGCWC 5 cut(s) 76, 405, 1326, 1867, 2732
BbvI GCAGC 9 cut(s) 223, 494, 620, 898, 934, 947, 1264, 2306, 2771
BccI CCATC 8 cut(s) 56, 114, 826, 1202, 1754, 2146, 2219, 2852
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 2 cut(s) 2159, 2516
BciVI GTATCC 2 cut(s) 767, 1099
BcnI CCSGG 1 cut(s) 2064
BcoDI GTCTC 5 cut(s) 150, 198, 209, 2174, 2492
BcuI ACTAGT 1 cut(s) 1570
BfaI CTAG 9 cut(s) 23, 497, 1128, 1529, 1571, 1734, 1836, 2202, 2564
BfmI CTRYAG 8 cut(s) 366, 702, 878, 948, 957, 1830, 2319, 2757
BfoI RGCGCY 1 cut(s) 302
BfrI CTTAAG 1 cut(s) 1808
BfuAI ACCTGC 2 cut(s) 885, 1930
BfuI GTATCC 2 cut(s) 767, 1099
BglII AGATCT 1 cut(s) 2452
BlnI CCTAGG 1 cut(s) 1528
BmcAI AGTACT 1 cut(s) 654
Bme1390I CCNGG 3 cut(s) 2064, 2159, 2516
Bme18I GGWCC 2 cut(s) 2155, 2206
BmeRI GACNNNNNGTC 2 cut(s) 1689, 1734
BmgT120I GGNCC 8 cut(s) 711, 1557, 1603, 1604, 2061, 2155, 2206, 2720
BmrFI CCNGG 3 cut(s) 2064, 2159, 2516
BmrI ACTGGG 1 cut(s) 1554
BmsI GCATC 8 cut(s) 188, 274, 348, 898, 1027, 1234, 1359, 1669
BmuI ACTGGG 1 cut(s) 1554
BpiI GAAGAC 4 cut(s) 94, 398, 804, 2653
BplI GAGNNNNNCTC 2 cut(s) 887, 919
BpmI CTGGAG 2 cut(s) 877, 2103
Bpu10I CCTNAGC 1 cut(s) 2830
Bpu14I TTCGAA 1 cut(s) 553
BpuEI CTTGAG 6 cut(s) 374, 644, 998, 2267, 2474, 2608
BpuMI CCSGG 1 cut(s) 2064
BsaAI YACGTR 1 cut(s) 2639
BsaBI GATNNNNATC 1 cut(s) 2505
BsaHI GRCGYC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 4 cut(s) 930, 1528, 2028, 2232
BsaWI WCCGGW 1 cut(s) 277
BsaXI ACNNNNNCTCC 2 cut(s) 2599, 2629
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 1339, 2374, 2491
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 5 cut(s) 501, 860, 1281, 1560, 2398
Bse21I CCTNAGG 1 cut(s) 1668
Bse3DI GCAATG 5 cut(s) 643, 808, 1095, 1981, 2083
Bse8I GATNNNNATC 1 cut(s) 2505
BseBI CCWGG 2 cut(s) 2159, 2516
BseDI CCNNGG 4 cut(s) 930, 1528, 2028, 2232
BseJI GATNNNNATC 1 cut(s) 2505
BseLI CCNNNNNNNGG 4 cut(s) 28, 1339, 2374, 2491
BseMI GCAATG 5 cut(s) 643, 808, 1095, 1981, 2083
BseMII CTCAG 7 cut(s) 19, 272, 538, 816, 1682, 2175, 2844
BseNI ACTGG 5 cut(s) 501, 860, 1281, 1560, 2398
BseRI GAGGAG 4 cut(s) 1334, 2154, 2422, 2678
BseSI GKGCMC 2 cut(s) 929, 1607
BseXI GCAGC 9 cut(s) 223, 494, 620, 898, 934, 947, 1264, 2306, 2771
BsgI GTGCAG 3 cut(s) 414, 1526, 2142
Bsh1236I CGCG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 571
BshFI GGCC 6 cut(s) 713, 1392, 1558, 1605, 2062, 2721
BshNI GGYRCC 4 cut(s) 873, 926, 1524, 2228
BsiEI CGRYCG 1 cut(s) 571
BsiHKAI GWGCWC 5 cut(s) 76, 405, 1326, 1867, 2732
BsiSI CCGG 5 cut(s) 209, 278, 760, 1478, 2064
BslFI GGGAC 4 cut(s) 573, 1722, 1835, 2219
BslI CCNNNNNNNGG 4 cut(s) 28, 1339, 2374, 2491
BsmAI GTCTC 5 cut(s) 150, 198, 209, 2174, 2492
BsmBI CGTCTC 3 cut(s) 150, 198, 2492
BsmFI GGGAC 4 cut(s) 573, 1722, 1835, 2219
BsmI GAATGC 1 cut(s) 1489
BsnI GGCC 6 cut(s) 713, 1392, 1558, 1605, 2062, 2721
Bso31I GGTCTC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 553
Bsp120I GGGCCC 1 cut(s) 1603
Bsp1286I GDGCHC 7 cut(s) 76, 405, 929, 1326, 1607, 1867, 2732
Bsp143I GATC 9 cut(s) 261, 568, 643, 1165, 1228, 1645, 1786, 2452, 2530
BspACI CCGC 9 cut(s) 79, 86, 139, 170, 197, 839, 1481, 2326, 2603
BspANI GGCC 6 cut(s) 713, 1392, 1558, 1605, 2062, 2721
BspCNI CTCAG 7 cut(s) 18, 271, 537, 815, 1681, 2176, 2843
BspFNI CGCG 1 cut(s) 36
BspHI TCATGA 1 cut(s) 1168
BspMAI CTGCAG 4 cut(s) 882, 952, 2323, 2761
BspMI ACCTGC 2 cut(s) 885, 1930
BspPI GGATC 1 cut(s) 638
BspT104I TTCGAA 1 cut(s) 553
BspT107I GGYRCC 4 cut(s) 873, 926, 1524, 2228
BspTI CTTAAG 1 cut(s) 1808
BspTNI GGTCTC 1 cut(s) 209
BsrBI CCGCTC 2 cut(s) 88, 2326
BsrDI GCAATG 5 cut(s) 643, 808, 1095, 1981, 2083
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 5 cut(s) 501, 860, 1281, 1560, 2398
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 4 cut(s) 930, 1528, 2028, 2232
BssMI GATC 9 cut(s) 261, 568, 643, 1165, 1228, 1645, 1786, 2452, 2530
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 2 cut(s) 1528, 2028
Bst2UI CCWGG 2 cut(s) 2159, 2516
Bst4CI ACNGT 7 cut(s) 332, 491, 1376, 1687, 2007, 2233, 2486
Bst6I CTCTTC 3 cut(s) 519, 1836, 2811
BstACI GRCGYC 1 cut(s) 99
BstAFI CTTAAG 1 cut(s) 1808
BstAPI GCANNNNNTGC 2 cut(s) 944, 1369
BstBAI YACGTR 1 cut(s) 2639
BstBI TTCGAA 1 cut(s) 553
BstC8I GCNNGC 7 cut(s) 34, 993, 1264, 1275, 1326, 2268, 2749
BstDSI CCRYGG 1 cut(s) 2232
BstENI CCTNNNNNAGG 1 cut(s) 26
BstFNI CGCG 1 cut(s) 36
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 3 cut(s) 38, 179, 301
BstKTI GATC 9 cut(s) 264, 571, 646, 1168, 1231, 1648, 1789, 2455, 2533
BstMAI GTCTC 5 cut(s) 150, 198, 209, 2174, 2492
BstMBI GATC 9 cut(s) 261, 568, 643, 1165, 1228, 1645, 1786, 2452, 2530
BstMCI CGRYCG 1 cut(s) 571
BstNI CCWGG 2 cut(s) 2159, 2516
BstNSI RCATGY 3 cut(s) 1065, 1277, 1702
BstSCI CCNGG 3 cut(s) 2062, 2157, 2514
BstSFI CTRYAG 8 cut(s) 366, 702, 878, 948, 957, 1830, 2319, 2757
BstSLI GKGCMC 2 cut(s) 929, 1607
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 9 cut(s) 223, 494, 620, 898, 934, 947, 1264, 2306, 2771
BstV2I GAAGAC 4 cut(s) 94, 398, 804, 2653
BstX2I RGATCY 2 cut(s) 643, 2452
BstXI CCANNNNNNTGG 1 cut(s) 2290
BstYI RGATCY 2 cut(s) 643, 2452
Bsu36I CCTNAGG 1 cut(s) 1668
BsuI GTATCC 2 cut(s) 767, 1099
BsuRI GGCC 6 cut(s) 713, 1392, 1558, 1605, 2062, 2721
BtgI CCRYGG 1 cut(s) 2232
BtsI GCAGTG 1 cut(s) 1370
BveI ACCTGC 2 cut(s) 885, 1930
Cac8I GCNNGC 7 cut(s) 34, 993, 1264, 1275, 1326, 2268, 2749
CciI TCATGA 1 cut(s) 1168
CfoI GCGC 3 cut(s) 38, 179, 301
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 8 cut(s) 711, 1557, 1603, 1604, 2061, 2155, 2206, 2720
CseI GACGC 4 cut(s) 88, 167, 242, 2082
Csp6I GTAC 7 cut(s) 653, 740, 766, 1131, 1966, 2229, 2640
CspCI CAANNNNNGTGG 2 cut(s) 2683, 2718
CviAII CATG 7 cut(s) 1062, 1169, 1192, 1274, 1699, 2047, 2143
CviQI GTAC 7 cut(s) 653, 740, 766, 1131, 1966, 2229, 2640
DpnI GATC 9 cut(s) 263, 570, 645, 1167, 1230, 1647, 1788, 2454, 2532
DpnII GATC 9 cut(s) 261, 568, 643, 1165, 1228, 1645, 1786, 2452, 2530
DraI TTTAAA 1 cut(s) 1932
DriI GACNNNNNGTC 2 cut(s) 1689, 1734
Eam1104I CTCTTC 3 cut(s) 519, 1836, 2811
Eam1105I GACNNNNNGTC 2 cut(s) 1689, 1734
EarI CTCTTC 3 cut(s) 519, 1836, 2811
EciI GGCGGA 3 cut(s) 68, 159, 186
Ecl136II GAGCTC 3 cut(s) 74, 1324, 2730
Eco130I CCWWGG 2 cut(s) 1528, 2028
Eco24I GRGCYC 4 cut(s) 76, 1326, 1607, 2732
Eco31I GGTCTC 1 cut(s) 209
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 2 cut(s) 2155, 2206
Eco53kI GAGCTC 3 cut(s) 74, 1324, 2730
Eco57I CTGAAG 3 cut(s) 765, 813, 1954
Eco81I CCTNAGG 1 cut(s) 1668
EcoICRI GAGCTC 3 cut(s) 74, 1324, 2730
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoO109I RGGNCCY 3 cut(s) 711, 1603, 1604
EcoRII CCWGG 2 cut(s) 2157, 2514
EcoRV GATATC 1 cut(s) 337
EcoT14I CCWWGG 2 cut(s) 1528, 2028
EcoT38I GRGCYC 4 cut(s) 76, 1326, 1607, 2732
ErhI CCWWGG 2 cut(s) 1528, 2028
Esp3I CGTCTC 3 cut(s) 150, 198, 2492
FaeI CATG 7 cut(s) 1065, 1172, 1195, 1277, 1702, 2050, 2146
FalI AAGNNNNNCTT 6 cut(s) 1290, 1322, 1851, 1883, 2526, 2558
FaqI GGGAC 4 cut(s) 573, 1722, 1835, 2219
FatI CATG 7 cut(s) 1061, 1168, 1191, 1273, 1698, 2046, 2142
FauI CCCGC 1 cut(s) 146
FauNDI CATATG 1 cut(s) 2332
FblI GTMKAC 2 cut(s) 1066, 2105
FriOI GRGCYC 4 cut(s) 76, 1326, 1607, 2732
FspBI CTAG 9 cut(s) 23, 497, 1128, 1529, 1571, 1734, 1836, 2202, 2564
GlaI GCGC 3 cut(s) 37, 178, 300
GsuI CTGGAG 2 cut(s) 877, 2103
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 6 cut(s) 713, 1392, 1558, 1605, 2062, 2721
HapII CCGG 5 cut(s) 209, 278, 760, 1478, 2064
HgaI GACGC 4 cut(s) 88, 167, 242, 2082
HhaI GCGC 3 cut(s) 38, 179, 301
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 7 cut(s) 1065, 1172, 1195, 1277, 1702, 2050, 2146
Hin6I GCGC 3 cut(s) 36, 177, 299
HinP1I GCGC 3 cut(s) 36, 177, 299
HincII GTYRAC 1 cut(s) 1067
HindII GTYRAC 1 cut(s) 1067
HindIII AAGCTT 1 cut(s) 1586
HpaII CCGG 5 cut(s) 209, 278, 760, 1478, 2064
HphI GGTGA 4 cut(s) 740, 1238, 1298, 2848
Hpy166II GTNNAC 4 cut(s) 1067, 2106, 2117, 2738
Hpy188III TCNNGA 9 cut(s) 153, 353, 668, 977, 1169, 1232, 1670, 1715, 2510
Hpy8I GTNNAC 4 cut(s) 1067, 2106, 2117, 2738
Hpy99I CGWCG 1 cut(s) 236
HpyCH4III ACNGT 7 cut(s) 332, 491, 1376, 1687, 2007, 2233, 2486
HpyCH4IV ACGT 4 cut(s) 307, 2119, 2137, 2638
HpySE526I ACGT 4 cut(s) 307, 2119, 2137, 2638
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 7 cut(s) 1065, 1172, 1195, 1277, 1702, 2050, 2146
HspAI GCGC 3 cut(s) 36, 177, 299
KpnI GGTACC 1 cut(s) 2232
Kzo9I GATC 9 cut(s) 261, 568, 643, 1165, 1228, 1645, 1786, 2452, 2530
LmnI GCTCC 8 cut(s) 71, 93, 1155, 1321, 1615, 2167, 2390, 2620
Lsp1109I GCAGC 9 cut(s) 223, 494, 620, 898, 934, 947, 1264, 2306, 2771
LweI GCATC 8 cut(s) 188, 274, 348, 898, 1027, 1234, 1359, 1669
MaeI CTAG 9 cut(s) 23, 497, 1128, 1529, 1571, 1734, 1836, 2202, 2564
MaeII ACGT 4 cut(s) 307, 2119, 2137, 2638
MaeIII GTNAC 1 cut(s) 2836
MalI GATC 9 cut(s) 263, 570, 645, 1167, 1230, 1647, 1788, 2454, 2532
MbiI CCGCTC 2 cut(s) 88, 2326
MboI GATC 9 cut(s) 261, 568, 643, 1165, 1228, 1645, 1786, 2452, 2530
MfeI CAATTG 1 cut(s) 1440
MflI RGATCY 2 cut(s) 643, 2452
MhlI GDGCHC 7 cut(s) 76, 405, 929, 1326, 1607, 1867, 2732
MlyI GAGTC 3 cut(s) 707, 794, 1859
MmeI TCCRAC 1 cut(s) 66
MroXI GAANNNNTTC 1 cut(s) 1302
MslI CAYNNNNRTG 3 cut(s) 1035, 1500, 2288
MspA1I CMGCKG 1 cut(s) 141
MspCI CTTAAG 1 cut(s) 1808
MspI CCGG 5 cut(s) 209, 278, 760, 1478, 2064
MspR9I CCNGG 3 cut(s) 2064, 2159, 2516
MunI CAATTG 1 cut(s) 1440
Mva1269I GAATGC 1 cut(s) 1489
MvaI CCWGG 2 cut(s) 2159, 2516
MvnI CGCG 1 cut(s) 36
NciI CCSGG 1 cut(s) 2064
NdeI CATATG 1 cut(s) 2332
NdeII GATC 9 cut(s) 261, 568, 643, 1165, 1228, 1645, 1786, 2452, 2530
NlaIII CATG 7 cut(s) 1065, 1172, 1195, 1277, 1702, 2050, 2146
NmeAIII GCCGAG 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 2836
NspI RCATGY 3 cut(s) 1065, 1277, 1702
NspV TTCGAA 1 cut(s) 553
OliI CACNNNNGTG 1 cut(s) 2288
PaeI GCATGC 1 cut(s) 1277
PagI TCATGA 1 cut(s) 1168
PaqCI CACCTGC 1 cut(s) 885
PciI ACATGT 1 cut(s) 1698
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PctI GAATGC 1 cut(s) 1489
PdmI GAANNNNTTC 1 cut(s) 1302
Ple19I CGATCG 1 cut(s) 571
PleI GAGTC 3 cut(s) 706, 794, 1858
PpsI GAGTC 3 cut(s) 706, 794, 1858
Ppu21I YACGTR 1 cut(s) 2639
PscI ACATGT 1 cut(s) 1698
PshBI ATTAAT 2 cut(s) 545, 605
Psp124BI GAGCTC 3 cut(s) 76, 1326, 2732
Psp6I CCWGG 2 cut(s) 2157, 2514
PspGI CCWGG 2 cut(s) 2157, 2514
PspOMI GGGCCC 1 cut(s) 1603
PspPI GGNCC 8 cut(s) 711, 1557, 1603, 1604, 2061, 2155, 2206, 2720
PstI CTGCAG 4 cut(s) 882, 952, 2323, 2761
PsuI RGATCY 2 cut(s) 643, 2452
PvuI CGATCG 1 cut(s) 571
RsaI GTAC 7 cut(s) 654, 741, 767, 1132, 1967, 2230, 2641
RsaNI GTAC 7 cut(s) 653, 740, 766, 1131, 1966, 2229, 2640
RseI CAYNNNNRTG 3 cut(s) 1035, 1500, 2288
SacI GAGCTC 3 cut(s) 76, 1326, 2732
SalI GTCGAC 1 cut(s) 1065
Sau3AI GATC 9 cut(s) 261, 568, 643, 1165, 1228, 1645, 1786, 2452, 2530
Sau96I GGNCC 8 cut(s) 711, 1557, 1603, 1604, 2061, 2155, 2206, 2720
ScaI AGTACT 1 cut(s) 654
SchI GAGTC 3 cut(s) 707, 794, 1859
ScrFI CCNGG 3 cut(s) 2064, 2159, 2516
SduI GDGCHC 7 cut(s) 76, 405, 929, 1326, 1607, 1867, 2732
SfaNI GCATC 8 cut(s) 188, 274, 348, 898, 1027, 1234, 1359, 1669
SfcI CTRYAG 8 cut(s) 366, 702, 878, 948, 957, 1830, 2319, 2757
SfuI TTCGAA 1 cut(s) 553
SinI GGWCC 2 cut(s) 2155, 2206
SmiMI CAYNNNNRTG 3 cut(s) 1035, 1500, 2288
SmlI CTYRAG 7 cut(s) 353, 659, 977, 1808, 2246, 2489, 2623
SmoI CTYRAG 7 cut(s) 353, 659, 977, 1808, 2246, 2489, 2623
SpeI ACTAGT 1 cut(s) 1570
SphI GCATGC 1 cut(s) 1277
SsiI CCGC 9 cut(s) 79, 86, 139, 170, 197, 839, 1481, 2326, 2603
SspMI CTAG 9 cut(s) 23, 497, 1128, 1529, 1571, 1734, 1836, 2202, 2564
SstI GAGCTC 3 cut(s) 76, 1326, 2732
StyD4I CCNGG 3 cut(s) 2062, 2157, 2514
StyI CCWWGG 2 cut(s) 1528, 2028
TaaI ACNGT 7 cut(s) 332, 491, 1376, 1687, 2007, 2233, 2486
TaiI ACGT 4 cut(s) 310, 2122, 2140, 2641
TaqI TCGA 5 cut(s) 553, 1066, 1164, 1231, 1769
TatI WGTACW 4 cut(s) 652, 765, 1130, 1965
TauI GCSGC 2 cut(s) 1484, 2605
TseFI GTSAC 1 cut(s) 2836
TseI GCWGC 9 cut(s) 236, 482, 633, 911, 935, 947, 1277, 2294, 2759
Tsp45I GTSAC 1 cut(s) 2836
Vha464I CTTAAG 1 cut(s) 1808
VpaK11BI GGWCC 2 cut(s) 2155, 2206
VspI ATTAAT 2 cut(s) 545, 605
XagI CCTNNNNNAGG 1 cut(s) 26
XapI RAATTY 4 cut(s) 252, 506, 1289, 1887
XceI RCATGY 3 cut(s) 1065, 1277, 1702
XmaJI CCTAGG 1 cut(s) 1528
XmiI GTMKAC 2 cut(s) 1066, 2105
XmnI GAANNNNTTC 1 cut(s) 1302
XspI CTAG 9 cut(s) 23, 497, 1128, 1529, 1571, 1734, 1836, 2202, 2564
ZrmI AGTACT 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.