Rh3AG297000

Condensin complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0006579
Physical Location & Seq
Reverse (-)
36288630 .. 36290776
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG297000.1

Sequence Viewer

Length: 816 bp
ATGTGGCCCGGTGTCAATGGCAATGCTGGAGGTTCTGCGTCTGTGGTGTCTAATATGCGTAAACGTGCAGTCCAAGTATCACGTTTCATGCTGCAGATGATCCAGGCCCCTCTATATGCAAAGGCGACCGAGGATGACAGAAACACTAGGGACCAACCAGAAGTTATCGATGGTACCGTGGAACCTCCACTTGAGAGTGGGGAGGAAGGGCTTGCAATACGCATAGCCACAGAGGTGGCAGCCTTCCCTACAAAGAAGACTCCTGCAGAGAGGTCATATGTGTCAGCACTATGTAGAATACTTGTTTTACTCCAATTTCGGGTATCAGAGCAAGAAGCAATCCAGTTAATGAGGAGGCTTTTAGTTCGTGTGGCTGAATCTGTATTGGCAGAGAAAGATCTTGTGAAGGAGTTGAGGCGAATGGCTGACAGTCTCAAGGCATTAGATAAACATCCTGACCTGGAAATATCACAAGATCAAGCTAATCTTATATTTGGAAGGTTAGAACTAGACTTCAACTTGGAATCCAATATATCTGCTGAAATGCCGCAAACACCAGCTCCTTGCTCAAGCAGACCAACACGTACCAGAAGACGAGTCAGGCAAGAGGAGGAATCTTCTGATGAAGATAGTTCGCCCACCTCTGTTGTTCCTAATAGTGTTGGCCCTATGAGCTCTCGTTCACAGAGAGCAAGCAAGACTGCAGCACTGACCAAGATAACGACTGCCATTACAGCCCCCACGATTGATGAAGATGATGAAGAGGAAGAAAGCTCAGGGGTGACATCTGATGACGATTCTGATGGCTCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cnd3

Protein Analysis

271

Amino Acids

29.76

Weight (kDa)

4.77

Isoelectric Point (pI)

66.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 1 cut(s) 548
AclWI GGATC 1 cut(s) 94
AfaI GTAC 2 cut(s) 175, 586
AfiI CCNNNNNNNGG 1 cut(s) 319
AflIII ACRYGT 1 cut(s) 581
AgsI TTSAA 1 cut(s) 517
AjnI CCWGG 2 cut(s) 102, 459
AleI CACNNNNGTG 1 cut(s) 233
AluBI AGCT 4 cut(s) 482, 560, 675, 774
AluI AGCT 4 cut(s) 482, 560, 675, 774
Alw21I GWGCWC 1 cut(s) 677
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 1 cut(s) 94
AoxI GGCC 3 cut(s) 5, 105, 664
ApeKI GCWGC 3 cut(s) 91, 239, 704
Asp718I GGTACC 1 cut(s) 173
AspS9I GGNCC 4 cut(s) 6, 106, 151, 665
AsuC2I CCSGG 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 793
AvaII GGWCC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 677
BbsI GAAGAC 2 cut(s) 263, 598
Bbv12I GWGCWC 1 cut(s) 677
BbvI GCAGC 3 cut(s) 78, 251, 716
BccI CCATC 2 cut(s) 164, 797
BciT130I CCWGG 2 cut(s) 104, 461
BcnI CCSGG 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 2 cut(s) 147, 509
BfmI CTRYAG 3 cut(s) 92, 264, 702
BglII AGATCT 1 cut(s) 397
BisI GCNGC 4 cut(s) 92, 240, 548, 705
BlsI GCNGC 4 cut(s) 93, 241, 549, 706
Bme1390I CCNGG 3 cut(s) 9, 104, 461
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 4 cut(s) 6, 106, 151, 665
BmiI GGNNCC 4 cut(s) 108, 152, 175, 183
BmrFI CCNGG 3 cut(s) 9, 104, 461
BpiI GAAGAC 2 cut(s) 263, 598
BpmI CTGGAG 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 775
BpuEI CTTGAG 3 cut(s) 212, 419, 553
BpuMI CCSGG 1 cut(s) 9
Bsa29I ATCGAT 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 584
BsaBI GATNNNNATC 1 cut(s) 450
BsaJI CCNNGG 2 cut(s) 129, 177
BsaXI ACNNNNNCTCC 2 cut(s) 544, 574
Bsc4I CCNNNNNNNGG 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 2 cut(s) 104, 461
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 129, 177
BseGI GGATG 2 cut(s) 139, 451
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 319
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 789
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 2 cut(s) 367, 623
BseXI GCAGC 3 cut(s) 78, 251, 716
BsgI GTGCAG 1 cut(s) 87
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 3 cut(s) 7, 107, 666
BshNI GGYRCC 1 cut(s) 173
BshVI ATCGAT 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 677
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 3 cut(s) 7, 107, 666
Bsp1286I GDGCHC 1 cut(s) 677
Bsp143I GATC 3 cut(s) 99, 397, 475
BspACI CCGC 1 cut(s) 548
BspANI GGCC 3 cut(s) 7, 107, 666
BspCNI CTCAG 1 cut(s) 788
BspDI ATCGAT 1 cut(s) 168
BspLI GGNNCC 4 cut(s) 108, 152, 175, 183
BspMAI CTGCAG 3 cut(s) 96, 268, 706
BspPI GGATC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 28
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 129, 177
BssMI GATC 3 cut(s) 99, 397, 475
Bst2UI CCWGG 2 cut(s) 104, 461
Bst4CI ACNGT 2 cut(s) 178, 431
Bst6I CTCTTC 1 cut(s) 756
BstBAI YACGTR 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 213, 694
BstDEI CTNAG 1 cut(s) 775
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 2 cut(s) 139, 451
BstKTI GATC 3 cut(s) 102, 400, 478
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 3 cut(s) 99, 397, 475
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 672, 734
BstNI CCWGG 2 cut(s) 104, 461
BstSCI CCNGG 3 cut(s) 7, 102, 459
BstSFI CTRYAG 3 cut(s) 92, 264, 702
BstV1I GCAGC 3 cut(s) 78, 251, 716
BstV2I GAAGAC 2 cut(s) 263, 598
BstX2I RGATCY 1 cut(s) 397
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 1 cut(s) 397
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 3 cut(s) 7, 107, 666
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 139, 451
BtsIMutI CAGTG 1 cut(s) 707
Cac8I GCNNGC 2 cut(s) 213, 694
Cfr13I GGNCC 4 cut(s) 6, 106, 151, 665
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 1 cut(s) 27
Csp6I GTAC 2 cut(s) 174, 585
CspCI CAANNNNNGTGG 2 cut(s) 628, 663
CviAII CATG 1 cut(s) 88
CviQI GTAC 2 cut(s) 174, 585
DdeI CTNAG 1 cut(s) 775
DpnI GATC 3 cut(s) 101, 399, 477
DpnII GATC 3 cut(s) 99, 397, 475
Eam1104I CTCTTC 1 cut(s) 756
EarI CTCTTC 1 cut(s) 756
Ecl136II GAGCTC 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 677
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 675
EcoICRI GAGCTC 1 cut(s) 675
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 102, 459
EcoT38I GRGCYC 1 cut(s) 677
FaeI CATG 1 cut(s) 91
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 87
FauNDI CATATG 1 cut(s) 277
Fnu4HI GCNGC 4 cut(s) 92, 240, 548, 705
FokI GGATG 2 cut(s) 146, 438
FriOI GRGCYC 1 cut(s) 677
Fsp4HI GCNGC 4 cut(s) 92, 240, 548, 705
FspBI CTAG 2 cut(s) 147, 509
GluI GCNGC 4 cut(s) 92, 240, 548, 705
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 3 cut(s) 7, 107, 666
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 27
Hin1II CATG 1 cut(s) 91
HinfI GANTC 6 cut(s) 259, 377, 524, 597, 614, 797
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 793
Hpy166II GTNNAC 2 cut(s) 62, 683
Hpy188I TCNGA 5 cut(s) 328, 622, 790, 802, 811
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 2 cut(s) 62, 683
HpyAV CCTTC 4 cut(s) 200, 253, 400, 492
HpyCH4III ACNGT 2 cut(s) 178, 431
HpyCH4IV ACGT 3 cut(s) 64, 82, 583
HpyCH4V TGCA 6 cut(s) 68, 94, 119, 215, 266, 704
HpyF10VI GCNNNNNNNGC 2 cut(s) 672, 734
HpyF3I CTNAG 1 cut(s) 775
HpySE526I ACGT 3 cut(s) 64, 82, 583
Hsp92II CATG 1 cut(s) 91
KpnI GGTACC 1 cut(s) 177
Kzo9I GATC 3 cut(s) 99, 397, 475
LmnI GCTCC 1 cut(s) 565
Lsp1109I GCAGC 3 cut(s) 78, 251, 716
MaeI CTAG 2 cut(s) 147, 509
MaeII ACGT 3 cut(s) 64, 82, 583
MaeIII GTNAC 1 cut(s) 781
MalI GATC 3 cut(s) 101, 399, 477
MboI GATC 3 cut(s) 99, 397, 475
MboII GAAGA 7 cut(s) 268, 603, 609, 638, 764, 773, 779
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 677
MluCI AATT 1 cut(s) 314
MlyI GAGTC 2 cut(s) 253, 606
MseI TTAA 1 cut(s) 347
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 3 cut(s) 9, 104, 461
MvaI CCWGG 2 cut(s) 104, 461
MwoI GCNNNNNNNGC 2 cut(s) 672, 734
NciI CCSGG 1 cut(s) 9
NdeI CATATG 1 cut(s) 277
NdeII GATC 3 cut(s) 99, 397, 475
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 4 cut(s) 108, 152, 175, 183
NmuCI GTSAC 1 cut(s) 781
OliI CACNNNNGTG 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 4 cut(s) 377, 524, 614, 797
PkrI GCNGC 4 cut(s) 93, 241, 549, 706
PleI GAGTC 2 cut(s) 253, 605
PpsI GAGTC 2 cut(s) 253, 605
Ppu21I YACGTR 1 cut(s) 584
Psp124BI GAGCTC 1 cut(s) 677
Psp6I CCWGG 2 cut(s) 102, 459
PspGI CCWGG 2 cut(s) 102, 459
PspN4I GGNNCC 4 cut(s) 108, 152, 175, 183
PspPI GGNCC 4 cut(s) 6, 106, 151, 665
PstI CTGCAG 3 cut(s) 96, 268, 706
PsuI RGATCY 1 cut(s) 397
RsaI GTAC 2 cut(s) 175, 586
RsaNI GTAC 2 cut(s) 174, 585
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 677
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 4 cut(s) 92, 240, 548, 705
Sau3AI GATC 3 cut(s) 99, 397, 475
Sau96I GGNCC 4 cut(s) 6, 106, 151, 665
SchI GAGTC 2 cut(s) 253, 606
ScrFI CCNGG 3 cut(s) 9, 104, 461
SduI GDGCHC 1 cut(s) 677
SfcI CTRYAG 3 cut(s) 92, 264, 702
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 3 cut(s) 191, 434, 568
SmoI CTYRAG 3 cut(s) 191, 434, 568
Sse9I AATT 1 cut(s) 314
SsiI CCGC 1 cut(s) 548
SspMI CTAG 2 cut(s) 147, 509
SstI GAGCTC 1 cut(s) 677
StyD4I CCNGG 3 cut(s) 7, 102, 459
TaaI ACNGT 2 cut(s) 178, 431
TaiI ACGT 3 cut(s) 67, 85, 586
TaqI TCGA 1 cut(s) 168
TaqII GACCGA 1 cut(s) 143
TasI AATT 1 cut(s) 314
TauI GCSGC 1 cut(s) 550
TfiI GAWTC 4 cut(s) 377, 524, 614, 797
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TscAI CASTG 1 cut(s) 714
TseFI GTSAC 1 cut(s) 781
TseI GCWGC 3 cut(s) 91, 239, 704
Tsp45I GTSAC 1 cut(s) 781
TspDTI ATGAA 4 cut(s) 76, 639, 765, 774
TspRI CASTG 1 cut(s) 714
VpaK11BI GGWCC 1 cut(s) 151
XspI CTAG 2 cut(s) 147, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.