Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000202.1

Orthogroup ID

OG0006579

Physical Location & Seq

Genomic Coordinates Reverse (-)

1403 .. 2107

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000202.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgaggaggcttttagttcgtgtggctgaatctgtattggcagagaaagatcttgtgaaggagttgaggcgaatggctgagcgtctcaaggcattagataaacatcctgacctggaaatatcacaagatcaagctaatcttatatttggaaggttagaactagacttcaacttggaattcaatatatctgctgaaatgccgcaaacaccagctccttgctcaagcagaccaacacgtaccagaagaagagtcaggcaagaggaggaatcttctgatgaagatagttcgcccacctctgttgttcctaatagtgttggccctatgagctctcgttcacagagagcaagcaagactgcagcactgaccaagataacgactgccattacagcccccacgattgatgaagatgatgaagaggaagaaagctcaggggtaacatctgatgacgattctgatggctctgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cnd3

Protein Analysis

155

Amino Acids

17.21

Weight (kDa)

4.65

Isoelectric Point (pI)

78.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37630
fragaria_vesca	FvH4_1g30230 FvH4_1g30230
malus_domestica	MD09G1270700.v1.1 MD17G1268900.v1.1
prunus_persica	Prupe.3G017700_v2.0.a1 Prupe.3G017700_v2.0.a1
pyrus_communis	pycom09g18180 pycom17g26750 pycom17g26760
rosa_chinensis	RchiOBHm_Chr3g0491161
rosa_laevigata	RLG00000022858
rosa_multiflora	Rmu_co8352689.1_g000001 Rmu_sc0024833.1_g000001 Rmu_ssc0000202.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393110
rosa_rugosa	Rorug03G0246600
rosa_samantha	Rh3AG297000 Rh3AG297100 Rh3BG333000 Rh3BG333100 Rh3CG330100 Rh3CG330200 Rh3DG330700 Rh3DG330800
rosa_wichuraiana	Rw3G026200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	169, 181
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	4 cut(s)	134, 212, 327, 426
AluI	AGCT	4 cut(s)	134, 212, 327, 426
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	89
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	1 cut(s)	449
BciT130I	CCWGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	354
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	2 cut(s)	200, 357
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	2 cut(s)	201, 358
Bme1390I	CCNGG	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	427
Bpu1102I	GCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	71, 205
BsaAI	YACGTR	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	103
BseJI	GATNNNNATC	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	69, 441
BseRI	GAGGAG	2 cut(s)	19, 275
BseXI	GCAGC	1 cut(s)	368
BshFI	GGCC	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	49, 127
Bsp1720I	GCTNAGC	1 cut(s)	78
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	70, 440
BspMAI	CTGCAG	1 cut(s)	358
BssMI	GATC	2 cut(s)	49, 127
Bst2UI	CCWGG	1 cut(s)	113
Bst6I	CTCTTC	2 cut(s)	241, 408
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	2 cut(s)	78, 427
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	2 cut(s)	52, 130
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	2 cut(s)	49, 127
BstMWI	GCNNNNNNNGC	2 cut(s)	324, 386
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	317
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	237
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	2 cut(s)	78, 427
DpnI	GATC	2 cut(s)	51, 129
DpnII	GATC	2 cut(s)	49, 127
Eam1104I	CTCTTC	2 cut(s)	241, 408
EarI	CTCTTC	2 cut(s)	241, 408
Ecl136II	GAGCTC	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	329
Eco53kI	GAGCTC	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	89
FaiI	YATR	3 cut(s)	143, 185, 323
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
Fnu4HI	GCNGC	2 cut(s)	200, 357
FokI	GGATG	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	200, 357
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	2 cut(s)	200, 357
HaeIII	GGCC	1 cut(s)	318
HgaI	GACGC	1 cut(s)	71
HinfI	GANTC	4 cut(s)	29, 249, 266, 449
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	4 cut(s)	274, 442, 454, 463
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	335
HpyAV	CCTTC	2 cut(s)	52, 144
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	324, 386
HpyF3I	CTNAG	2 cut(s)	78, 427
HpySE526I	ACGT	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	49, 127
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	7 cut(s)	98, 120, 125, 222, 238, 253, 414
Lsp1109I	GCAGC	1 cut(s)	368
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	2 cut(s)	51, 129
MboI	GATC	2 cut(s)	49, 127
MboII	GAAGA	7 cut(s)	255, 258, 261, 290, 416, 425, 431
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	258
MnlI	CCTC	5 cut(s)	60, 253, 256, 304, 409
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	324, 386
NdeII	GATC	2 cut(s)	49, 127
PfeI	GAWTC	3 cut(s)	29, 266, 449
PkrI	GCNGC	2 cut(s)	201, 358
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	317
PstI	CTGCAG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SacI	GAGCTC	1 cut(s)	329
SatI	GCNGC	2 cut(s)	200, 357
Sau3AI	GATC	2 cut(s)	49, 127
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	8 cut(s)	114, 136, 155, 214, 238, 296, 329, 428
SfcI	CTRYAG	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	86, 220
SmoI	CTYRAG	2 cut(s)	86, 220
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	1 cut(s)	200
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	111
TaiI	ACGT	1 cut(s)	238
TasI	AATT	1 cut(s)	176
TauI	GCSGC	1 cut(s)	202
TfiI	GAWTC	3 cut(s)	29, 266, 449
TscAI	CASTG	1 cut(s)	366
TseI	GCWGC	1 cut(s)	356
TspDTI	ATGAA	3 cut(s)	291, 417, 426
TspRI	CASTG	1 cut(s)	366
XapI	RAATTY	1 cut(s)	176
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.