MD17G1268900.v1.1

Condensin complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0006579
Physical Location & Seq
Forward (+)
32891785 .. 32898982
7198 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1268900.v1.1.491

Sequence Viewer

Length: 3102 bp
ATGGCGGGATTGACGGCAGAAGAAGAGAACCCCTTGATGCTCAAAATCGCTCAAATCCTCGACGACGCTCGGGCTTCCAACGCCAGCCACACCCGCAAGCTCAAGGAGCTCGCCGCCCTCCGCTCCAAAACGTCGTCCTCCTCCCTCTTCTTCTCTGCATTCTGTAAAACTCTACTTCCCCTCTTCGCCTTCCAGAGGCGCACCGCCTCCGCCGAACGCATCGTCCGGTTCATCTCCGCCTTCGCAACTGCCCGAGACTCCGGCAATGCCTCCCAATCCGACGCTTTCTTGGAGGAATTTCTCAGGTTCCTTTTGCCGGCGTCATCAGCCGCTAAAAAGACTCCGAGGTCACGAGCCTGCCAGATTGTTTCTGAGATCATCGTGCAATTACCTGATGATGCGGAAGTGAGCAGTGATCTCTGGGATGAAGTAATAGATTGTATGAAGTTGCGTGCGGGGGACAAGGTCCCTGTAATCCGTACATGTGCAGTTAGAGCTCTTTCACGTTTTGCAAGTGATTGCGAGAACAGTGATATCCTTGATTTATTTCTTGAGATGCTTCCTGCAGAGCAAACTGTGGTTCGGAAGGCAATAGTGCTATCTTTGCCTCCTTCAAATGCAACCGCACAAGCAATCATTGATTGTACATTAGATGTCAGTGAATCAGTGCGCAAAGCAGCATACCGTGTTCTAGCTAGTAAATTTCCTCTTCAAAGTCTAAGTATCAAGCATAGAACATTAATTCTTCAGAGGGGACTTGCTGATCGTTCTGTTGCTGTTTCAAATGAGTGTCTAAAGTTAATGAAAGATGAATGGTTAAATAAATGCTGCAAAGGAGACCCTTTAGAACTACTCAAGTATCTCGATGTTGAAACCTATGAATTGGTTGGGGAGTCAGTGGCTTGTGCGTTGTTAAAAGATGGTTTAATTAAATTACATGATGGTGAAAGTATTCGGCACTACATATCATCTGCGGATGAGAGAACTGAAGGCGGTTCAGAACGTTGCACGCCAAGCATTCAACTAATGGAAGCGGAGGTAGCCCTTTATTGGAGGATGATATGTAGGCACCTGCAGATGGAAGCACAAGCTAAAGGCTCTGACGCTGCTTCAACAATGGGCACTGAAGCAGCAGTATATGCGGCAGAAGCTTCAGACACCAGTGACCTTCTTGAGCAAATTCTACCAGCAACAATTTCTGATTATATAGATTTAGTCAAAGCTCACATTGATGCTGGACCAAATTATCGCTTTGCATGTCGGCAGCTACTATTGCTTGGTGCAATGCTTGATTTTTCAGATGTTACAACCCGGAAGGTTGCTAGTACATTTGTGCTGGAGCTTCTGCATAAGCCTTTTGATCATGAAGTTGATGAGTGTGGGAACATGGTTGTTATAGGAGATGGAATAAATCTTGGTGGTGATAGAGATTGGGCTGAAGCAGTGTTTGGGTTAGCAAGCAAGGTGCATGCTGCTAGTGGTGAATTTGAAGAAGTTGTTCTTGGGGTTGTAGAGGAACTTGCTCGTTCTTGCAGGGAAAGAACAGCGGATTTTCTGCAATGGATGCACTGCCTTGCTGTTTTCGGCCTTTGCTTGGAGAAGGCAAGGTCATATCATTGGATTCAAGGGAAAGCTATTGAACCTACTGAACTACTGCAATCGTTGTTGCTTCCAGCGGCAAAACATTCTCACTTGGAAGTCCAAGGGATTGCAGTCAGGTGTCTTGGGCTTTTTGGATTGTTAGAGAAAAAGCCAAGCCAGGAACTAGTAAAGCAGTTAAAGCTTTCATTTATTAAGGGACCAGCTCCAATTAGCATAGTTGCTTGCAAGGCATTATTTGATCTCGGGATGTGGCATAATCCTCAGGAAGTTGATAGGGTGATGGGCGTGGACATTTCACCACAATGTCAAGATTATGATATAACTTCTAGTCCTTTAAACCTTTCTGATACAGATGGGATATCGAGCATTAAATTGCTAGATCTTTTGTATGCTGGAATCATGAAAGATGATTGGGACAGTTCTTTAGCAAATGATGAAAATGAGTCCATTCACTGTGCTCTTGGTGAGGGGTTTGCAAAAATTCTTCTTCTAAGTGAGAATTACCAAGGCATGCCTGCTTCTTTACATCCATTACTTTTATCCAAGCTCATTACCTTGTACTTCAGCAACGAATCTAAAGACTTGCAGAGGTTGAAACAGTGCTTATCTGTGTTCTTTGAGAATTACCCTTCCCTCGCAGTTAATCACAAGAAGTGTATATCCAAGGCTTTCCTTCCAGTCATGCATTCTCTGTGGCCGGGTATCAATGGCACTGCTGGAGGTTCTGCTACCATGGTTTCTAATATGCGTAAGCGTGCAGTCCAAGTATCACGTTTTATGCTGCACATCATGCAGGCTCCCTTATATAAAAATGGGACAGAGAAAGGAAATGATACCGGGGAACTACCAGAAGTGATAGAAGAACCTCCACTTGAGTGTGGTGAGGAGGGGCTTGCCATACGCATAGCCGCAGAGGTTGCTACTTTCGGTACAAAGAAGACACCTGCAGAGAAGGCATACGTGTCAGCATTATGCAGAGTACTTGTCATGCTCCATTTCCGGTTATCAGAGCAAGAGGCAATTCAGTTAATGAGGAGGCTTTTAATTCTTGTGGTTGAATCTGTATCAGCAGAGAAGGATCTTGTCAAAGAGTTAAGGCGGATGGCTGACCATCTCAAGGCACAAGATAGGCATCCAGATCAGGAAATGTCGCAAGATCAAGCTAATCTTATATTTGGTAAGTTAGAACTAGACTTCAACTTGGATTTCAATGTTTCTGTTGAAATGCCGCAAACCCCAGCTCCTCGCTCAACCAAACCAGCCCGTTCCAGAAGACGAGTGGCGCTTGAAGAGGCATCTTCAGACGATGAAGATAGTTCTCCCACCTCGGTGGTTCCTAATAATCTTGTCACAATAAGCGCTCGCTCACAGAGAGCAAGCAAGACCGCAGCACTATCGAAGATGACTGCTAATAAAGCCTTGAGGATCGATGAAGATGATGAAGAGGAGGAAGAAGGCTCGGAGGTTATATCTGATGAAGACTCCGATGGATCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cnd3

Protein Analysis

1034

Amino Acids

113.98

Weight (kDa)

5.2

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cnd3 PF12719 523 - 867 5.8e-52 Nuclear condensing complex subunits, C-term domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1080, 2554
AasI GACNNNNNNGTC 1 cut(s) 346
Acc16I TGCGCA 1 cut(s) 671
Acc36I ACCTGC 2 cut(s) 1080, 2554
AccB1I GGYRCC 1 cut(s) 1068
AccBSI CCGCTC 1 cut(s) 123
AclI AACGTT 1 cut(s) 1003
AclWI GGATC 3 cut(s) 2688, 3035, 3100
AcoI YGGCCR 1 cut(s) 2297
AcsI RAATTY 5 cut(s) 296, 701, 1179, 1484, 2082
AcuI CTGAAG 7 cut(s) 731, 1008, 1137, 1146, 1458, 2149, 2886
AcyI GRCGYC 1 cut(s) 320
AfaI GTAC 6 cut(s) 481, 646, 1327, 2162, 2533, 2583
AfeI AGCGCT 1 cut(s) 2962
AfiI CCNNNNNNNGG 6 cut(s) 195, 316, 1050, 1078, 1594, 2719
AflIII ACRYGT 2 cut(s) 482, 2562
AhlI ACTAGT 1 cut(s) 1765
AjnI CCWGG 1 cut(s) 1758
AjuI GAANNNNNNNTTGG 4 cut(s) 1431, 1463, 1485, 1517
AleI CACNNNNGTG 2 cut(s) 2476, 2930
AloI GAACNNNNNNTCC 2 cut(s) 207, 239
Alw21I GWGCWC 3 cut(s) 111, 499, 2062
Alw26I GTCTC 2 cut(s) 249, 831
AlwI GGATC 3 cut(s) 2688, 3035, 3100
Ama87I CYCGRG 3 cut(s) 69, 252, 1844
Aor51HI AGCGCT 1 cut(s) 2962
AoxI GGCC 2 cut(s) 1585, 2297
ApeKI GCWGC 8 cut(s) 677, 828, 1106, 1130, 1264, 1472, 2383, 2990
ApoI RAATTY 5 cut(s) 296, 701, 1179, 1484, 2082
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AseI ATTAAT 1 cut(s) 740
Asp700I GAANNNNTTC 2 cut(s) 951, 1497
AspLEI GCGC 4 cut(s) 201, 672, 2887, 2963
AspS9I GGNCC 3 cut(s) 466, 1238, 1799
AsuC2I CCSGG 3 cut(s) 1312, 2301, 2440
AsuHPI GGTGA 7 cut(s) 956, 1433, 1493, 1890, 1891, 2078, 2495
AvaI CYCGRG 3 cut(s) 69, 252, 1844
AvaII GGWCC 3 cut(s) 466, 1238, 1799
AxyI CCTNAGG 1 cut(s) 1863
BaeGI GKGCMC 1 cut(s) 1124
BaeI ACNNNNGTAYC 2 cut(s) 842, 875
BanI GGYRCC 1 cut(s) 1068
BanII GRGCYC 2 cut(s) 111, 499
BauI CACGAG 1 cut(s) 351
BbsI GAAGAC 3 cut(s) 2546, 2881, 3087
Bbv12I GWGCWC 3 cut(s) 111, 499, 2062
BbvI GCAGC 8 cut(s) 689, 815, 1093, 1142, 1276, 1459, 2370, 3002
BccI CCATC 9 cut(s) 914, 935, 1072, 1397, 1876, 1949, 2698, 2721, 3083
BceAI ACGGC 1 cut(s) 30
BcgI CGANNNNNNTGC 2 cut(s) 2979, 3013
BciT130I CCWGG 1 cut(s) 1760
BclI TGATCA 1 cut(s) 1360
BcnI CCSGG 3 cut(s) 1312, 2301, 2440
BcoDI GTCTC 2 cut(s) 249, 831
BcuI ACTAGT 1 cut(s) 1765
BfaI CTAG 8 cut(s) 692, 696, 1323, 1476, 1766, 1929, 1979, 2792
BfmI CTRYAG 3 cut(s) 564, 1073, 2547
BfoI RGCGCY 2 cut(s) 2888, 2964
BfuAI ACCTGC 2 cut(s) 1080, 2554
BglII AGATCT 1 cut(s) 1981
BmcAI AGTACT 1 cut(s) 2583
Bme1390I CCNGG 4 cut(s) 1312, 1760, 2301, 2440
Bme18I GGWCC 3 cut(s) 466, 1238, 1799
BmeT110I CYCGRG 3 cut(s) 69, 252, 1844
BmgT120I GGNCC 3 cut(s) 466, 1238, 1799
BmiI GGNNCC 6 cut(s) 308, 468, 1070, 1800, 2400, 2937
BmrFI CCNGG 4 cut(s) 1312, 1760, 2301, 2440
BmsI GCATC 8 cut(s) 27, 228, 388, 546, 1222, 1554, 2743, 2906
BpiI GAAGAC 3 cut(s) 2546, 2881, 3087
BpmI CTGGAG 2 cut(s) 1358, 2340
BpuEI CTTGAG 7 cut(s) 86, 572, 839, 1193, 2495, 2702, 3043
BpuMI CCSGG 3 cut(s) 1312, 2301, 2440
Bsa29I ATCGAT 1 cut(s) 3030
BsaAI YACGTR 1 cut(s) 2563
BsaBI GATNNNNATC 1 cut(s) 2733
BsaHI GRCGYC 1 cut(s) 320
BsaI GGTCTC 1 cut(s) 831
BsaJI CCNNGG 7 cut(s) 344, 1702, 2107, 2265, 2334, 2439, 2928
BsaWI WCCGGW 2 cut(s) 225, 2601
BsaXI ACNNNNNCTCC 2 cut(s) 2827, 2857
Bsc4I CCNNNNNNNGG 6 cut(s) 195, 316, 1050, 1078, 1594, 2719
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 1161, 2279
Bse21I CCTNAGG 1 cut(s) 1863
Bse3DI GCAATG 3 cut(s) 271, 1290, 1565
Bse8I GATNNNNATC 1 cut(s) 2733
BseBI CCWGG 1 cut(s) 1760
BseCI ATCGAT 1 cut(s) 3030
BseDI CCNNGG 7 cut(s) 344, 1702, 2107, 2265, 2334, 2439, 2928
BseGI GGATG 8 cut(s) 430, 982, 1062, 1569, 1854, 2128, 2709, 2734
BseJI GATNNNNATC 1 cut(s) 2733
BseLI CCNNNNNNNGG 6 cut(s) 195, 316, 1050, 1078, 1594, 2719
BseMI GCAATG 3 cut(s) 271, 1290, 1565
BseMII CTCAG 3 cut(s) 316, 363, 1877
BseNI ACTGG 2 cut(s) 1161, 2279
BseRI GAGGAG 5 cut(s) 130, 2501, 2650, 2835, 3062
BseSI GKGCMC 1 cut(s) 1124
BseXI GCAGC 8 cut(s) 689, 815, 1093, 1142, 1276, 1459, 2370, 3002
BseYI CCCAGC 1 cut(s) 2839
BsgI GTGCAG 3 cut(s) 507, 2369, 2379
BshFI GGCC 2 cut(s) 1587, 2299
BshNI GGYRCC 1 cut(s) 1068
BshVI ATCGAT 1 cut(s) 3030
BsiHKAI GWGCWC 3 cut(s) 111, 499, 2062
BsiHKCI CYCGRG 3 cut(s) 69, 252, 1844
BsiSI CCGG 7 cut(s) 226, 261, 317, 1312, 2300, 2439, 2602
BslFI GGGAC 6 cut(s) 452, 473, 768, 1812, 2030, 2431
BslI CCNNNNNNNGG 6 cut(s) 195, 316, 1050, 1078, 1594, 2719
BsmAI GTCTC 2 cut(s) 249, 831
BsmFI GGGAC 6 cut(s) 452, 473, 768, 1812, 2030, 2431
BsmI GAATGC 3 cut(s) 158, 1017, 2287
BsnI GGCC 2 cut(s) 1587, 2299
Bso31I GGTCTC 1 cut(s) 831
BsoBI CYCGRG 3 cut(s) 69, 252, 1844
Bsp1286I GDGCHC 4 cut(s) 111, 499, 1124, 2062
Bsp1407I TGTACA 1 cut(s) 644
Bsp19I CCATGG 1 cut(s) 2334
BspANI GGCC 2 cut(s) 1587, 2299
BspCNI CTCAG 3 cut(s) 315, 364, 1876
BspDI ATCGAT 1 cut(s) 3030
BspHI TCATGA 2 cut(s) 1363, 2001
BspLI GGNNCC 6 cut(s) 308, 468, 1070, 1800, 2400, 2937
BspMAI CTGCAG 3 cut(s) 568, 1077, 2551
BspMI ACCTGC 2 cut(s) 1080, 2554
BspPI GGATC 3 cut(s) 2688, 3035, 3100
BspT107I GGYRCC 1 cut(s) 1068
BspTNI GGTCTC 1 cut(s) 831
BsrBI CCGCTC 1 cut(s) 123
BsrDI GCAATG 3 cut(s) 271, 1290, 1565
BsrFI RCCGGY 1 cut(s) 316
BsrGI TGTACA 1 cut(s) 644
BsrI ACTGG 2 cut(s) 1161, 2279
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 7 cut(s) 344, 1702, 2107, 2265, 2334, 2439, 2928
BssNI GRCGYC 1 cut(s) 320
BssSI CACGAG 1 cut(s) 351
BssT1I CCWWGG 4 cut(s) 1702, 2107, 2265, 2334
Bst2BI CACGAG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 1760
Bst4CI ACNGT 6 cut(s) 530, 577, 686, 2021, 2057, 2202
Bst6I CTCTTC 6 cut(s) 18, 152, 188, 714, 2886, 3039
BstACI GRCGYC 1 cut(s) 320
BstAPI GCANNNNNTGC 4 cut(s) 1139, 1564, 2392, 2519
BstAUI TGTACA 1 cut(s) 644
BstBAI YACGTR 1 cut(s) 2563
BstDEI CTNAG 5 cut(s) 302, 372, 719, 1863, 2093
BstDSI CCRYGG 1 cut(s) 2334
BstENI CCTNNNNNAGG 1 cut(s) 193
BstF5I GGATG 8 cut(s) 430, 982, 1062, 1569, 1854, 2128, 2709, 2734
BstH2I RGCGCY 2 cut(s) 2888, 2964
BstHHI GCGC 4 cut(s) 201, 672, 2887, 2963
BstMAI GTCTC 2 cut(s) 249, 831
BstNI CCWGG 1 cut(s) 1760
BstNSI RCATGY 4 cut(s) 486, 1260, 1472, 2116
BstSCI CCNGG 4 cut(s) 1310, 1758, 2299, 2438
BstSFI CTRYAG 3 cut(s) 564, 1073, 2547
BstSLI GKGCMC 1 cut(s) 1124
BstV1I GCAGC 8 cut(s) 689, 815, 1093, 1142, 1276, 1459, 2370, 3002
BstV2I GAAGAC 3 cut(s) 2546, 2881, 3087
BstX2I RGATCY 3 cut(s) 1981, 2680, 3092
BstXI CCANNNNNNTGG 1 cut(s) 2932
BstYI RGATCY 3 cut(s) 1981, 2680, 3092
Bsu15I ATCGAT 1 cut(s) 3030
Bsu36I CCTNAGG 1 cut(s) 1863
BsuRI GGCC 2 cut(s) 1587, 2299
BsuTUI ATCGAT 1 cut(s) 3030
BtgI CCRYGG 1 cut(s) 2334
BtsCI GGATG 8 cut(s) 430, 982, 1062, 1569, 1854, 2128, 2709, 2734
BtsI GCAGTG 4 cut(s) 418, 1449, 1567, 2313
BveI ACCTGC 2 cut(s) 1080, 2554
CciI TCATGA 2 cut(s) 1363, 2001
CfoI GCGC 4 cut(s) 201, 672, 2887, 2963
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 3 cut(s) 466, 1238, 1799
ClaI ATCGAT 1 cut(s) 3030
CseI GACGC 4 cut(s) 74, 290, 309, 1112
Csp6I GTAC 6 cut(s) 480, 645, 1326, 2161, 2532, 2582
CviQI GTAC 6 cut(s) 480, 645, 1326, 2161, 2532, 2582
DdeI CTNAG 5 cut(s) 302, 372, 719, 1863, 2093
DraI TTTAAA 1 cut(s) 1938
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 2297
Eam1104I CTCTTC 6 cut(s) 18, 152, 188, 714, 2886, 3039
EarI CTCTTC 6 cut(s) 18, 152, 188, 714, 2886, 3039
EciI GGCGGA 3 cut(s) 199, 226, 2716
Ecl136II GAGCTC 2 cut(s) 109, 497
Eco130I CCWWGG 4 cut(s) 1702, 2107, 2265, 2334
Eco24I GRGCYC 2 cut(s) 111, 499
Eco31I GGTCTC 1 cut(s) 831
Eco32I GATATC 2 cut(s) 535, 1962
Eco47I GGWCC 3 cut(s) 466, 1238, 1799
Eco47III AGCGCT 1 cut(s) 2962
Eco53kI GAGCTC 2 cut(s) 109, 497
Eco57I CTGAAG 7 cut(s) 731, 1008, 1137, 1146, 1458, 2149, 2886
Eco81I CCTNAGG 1 cut(s) 1863
Eco88I CYCGRG 3 cut(s) 69, 252, 1844
EcoICRI GAGCTC 2 cut(s) 109, 497
EcoNI CCTNNNNNAGG 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 1758
EcoRV GATATC 2 cut(s) 535, 1962
EcoT14I CCWWGG 4 cut(s) 1702, 2107, 2265, 2334
EcoT22I ATGCAT 1 cut(s) 2289
EcoT38I GRGCYC 2 cut(s) 111, 499
ErhI CCWWGG 4 cut(s) 1702, 2107, 2265, 2334
FalI AAGNNNNNCTT 4 cut(s) 1485, 1517, 2754, 2786
FaqI GGGAC 6 cut(s) 452, 473, 768, 1812, 2030, 2431
FauI CCCGC 2 cut(s) 101, 448
FbaI TGATCA 1 cut(s) 1360
FokI GGATG 8 cut(s) 437, 989, 1069, 1576, 1861, 2115, 2716, 2721
FriOI GRGCYC 2 cut(s) 111, 499
FspBI CTAG 8 cut(s) 692, 696, 1323, 1476, 1766, 1929, 1979, 2792
FspI TGCGCA 1 cut(s) 671
GlaI GCGC 4 cut(s) 200, 671, 2886, 2962
GsaI CCCAGC 1 cut(s) 2843
GsuI CTGGAG 2 cut(s) 1358, 2340
HaeII RGCGCY 2 cut(s) 2888, 2964
HaeIII GGCC 2 cut(s) 1587, 2299
HapII CCGG 7 cut(s) 226, 261, 317, 1312, 2300, 2439, 2602
HgaI GACGC 4 cut(s) 74, 290, 309, 1112
HhaI GCGC 4 cut(s) 201, 672, 2887, 2963
Hin1I GRCGYC 1 cut(s) 320
Hin6I GCGC 4 cut(s) 199, 670, 2885, 2961
HinP1I GCGC 4 cut(s) 199, 670, 2885, 2961
HindIII AAGCTT 2 cut(s) 1149, 1781
HpaII CCGG 7 cut(s) 226, 261, 317, 1312, 2300, 2439, 2602
HphI GGTGA 7 cut(s) 956, 1433, 1493, 1890, 1891, 2078, 2495
Hpy166II GTNNAC 1 cut(s) 1891
Hpy8I GTNNAC 1 cut(s) 1891
Hpy99I CGWCG 4 cut(s) 65, 68, 136, 284
HpyCH4III ACNGT 6 cut(s) 530, 577, 686, 2021, 2057, 2202
HpyCH4IV ACGT 5 cut(s) 131, 505, 1003, 2374, 2562
HpyF3I CTNAG 5 cut(s) 302, 372, 719, 1863, 2093
HpySE526I ACGT 5 cut(s) 131, 505, 1003, 2374, 2562
Hsp92I GRCGYC 1 cut(s) 320
HspAI GCGC 4 cut(s) 199, 670, 2885, 2961
KroI GCCGGC 1 cut(s) 316
KroNI GCCGGC 1 cut(s) 318
Ksp22I TGATCA 1 cut(s) 1360
LmnI GCTCC 7 cut(s) 106, 128, 1339, 1810, 2404, 2598, 2848
Lsp1109I GCAGC 8 cut(s) 689, 815, 1093, 1142, 1276, 1459, 2370, 3002
LweI GCATC 8 cut(s) 27, 228, 388, 546, 1222, 1554, 2743, 2906
MaeI CTAG 8 cut(s) 692, 696, 1323, 1476, 1766, 1929, 1979, 2792
MaeII ACGT 5 cut(s) 131, 505, 1003, 2374, 2562
MaeIII GTNAC 4 cut(s) 348, 1163, 1303, 2950
MbiI CCGCTC 1 cut(s) 123
MflI RGATCY 3 cut(s) 1981, 2680, 3092
MhlI GDGCHC 4 cut(s) 111, 499, 1124, 2062
MlyI GAGTC 5 cut(s) 251, 334, 902, 2054, 3077
MmeI TCCRAC 2 cut(s) 102, 303
Mph1103I ATGCAT 1 cut(s) 2289
MroNI GCCGGC 1 cut(s) 316
MroXI GAANNNNTTC 2 cut(s) 951, 1497
MslI CAYNNNNRTG 5 cut(s) 942, 1230, 1903, 2476, 2930
MspA1I CMGCKG 2 cut(s) 1547, 1676
MspI CCGG 7 cut(s) 226, 261, 317, 1312, 2300, 2439, 2602
MspR9I CCNGG 4 cut(s) 1312, 1760, 2301, 2440
Mva1269I GAATGC 3 cut(s) 158, 1017, 2287
MvaI CCWGG 1 cut(s) 1760
NaeI GCCGGC 1 cut(s) 318
NciI CCSGG 3 cut(s) 1312, 2301, 2440
NcoI CCATGG 1 cut(s) 2334
NgoMIV GCCGGC 1 cut(s) 316
NlaIV GGNNCC 6 cut(s) 308, 468, 1070, 1800, 2400, 2937
NmuCI GTSAC 3 cut(s) 348, 1163, 2950
NsbI TGCGCA 1 cut(s) 671
NsiI ATGCAT 1 cut(s) 2289
NspI RCATGY 4 cut(s) 486, 1260, 1472, 2116
OliI CACNNNNGTG 2 cut(s) 2476, 2930
PacI TTAATTAA 1 cut(s) 930
PaeI GCATGC 2 cut(s) 1472, 2116
PagI TCATGA 2 cut(s) 1363, 2001
PaqCI CACCTGC 2 cut(s) 1080, 2554
PciI ACATGT 1 cut(s) 482
PctI GAATGC 3 cut(s) 158, 1017, 2287
PdiI GCCGGC 1 cut(s) 318
PdmI GAANNNNTTC 2 cut(s) 951, 1497
PfeI GAWTC 5 cut(s) 662, 1621, 1998, 2174, 2660
PflFI GACNNNGTC 1 cut(s) 464
PleI GAGTC 5 cut(s) 251, 334, 901, 2053, 3077
PpsI GAGTC 5 cut(s) 251, 334, 901, 2053, 3077
Ppu21I YACGTR 1 cut(s) 2563
PpuMI RGGWCCY 1 cut(s) 466
PscI ACATGT 1 cut(s) 482
PshBI ATTAAT 1 cut(s) 740
Psp124BI GAGCTC 2 cut(s) 111, 499
Psp1406I AACGTT 1 cut(s) 1003
Psp5II RGGWCCY 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 1758
PspFI CCCAGC 1 cut(s) 2839
PspGI CCWGG 1 cut(s) 1758
PspN4I GGNNCC 6 cut(s) 308, 468, 1070, 1800, 2400, 2937
PspPI GGNCC 3 cut(s) 466, 1238, 1799
PspPPI RGGWCCY 1 cut(s) 466
PstI CTGCAG 3 cut(s) 568, 1077, 2551
PsuI RGATCY 3 cut(s) 1981, 2680, 3092
PsyI GACNNNGTC 1 cut(s) 464
RsaI GTAC 6 cut(s) 481, 646, 1327, 2162, 2533, 2583
RsaNI GTAC 6 cut(s) 480, 645, 1326, 2161, 2532, 2582
RseI CAYNNNNRTG 5 cut(s) 942, 1230, 1903, 2476, 2930
SacI GAGCTC 2 cut(s) 111, 499
Sau96I GGNCC 3 cut(s) 466, 1238, 1799
ScaI AGTACT 1 cut(s) 2583
SchI GAGTC 5 cut(s) 251, 334, 902, 2054, 3077
ScrFI CCNGG 4 cut(s) 1312, 1760, 2301, 2440
SduI GDGCHC 4 cut(s) 111, 499, 1124, 2062
SfaNI GCATC 8 cut(s) 27, 228, 388, 546, 1222, 1554, 2743, 2906
SfcI CTRYAG 3 cut(s) 564, 1073, 2547
SinI GGWCC 3 cut(s) 466, 1238, 1799
SmiMI CAYNNNNRTG 5 cut(s) 942, 1230, 1903, 2476, 2930
SmlI CTYRAG 7 cut(s) 101, 551, 854, 1172, 2474, 2717, 3022
SmoI CTYRAG 7 cut(s) 101, 551, 854, 1172, 2474, 2717, 3022
SpeI ACTAGT 1 cut(s) 1765
SphI GCATGC 2 cut(s) 1472, 2116
SspMI CTAG 8 cut(s) 692, 696, 1323, 1476, 1766, 1929, 1979, 2792
SstI GAGCTC 2 cut(s) 111, 499
StyD4I CCNGG 4 cut(s) 1310, 1758, 2299, 2438
StyI CCWWGG 4 cut(s) 1702, 2107, 2265, 2334
TaaI ACNGT 6 cut(s) 530, 577, 686, 2021, 2057, 2202
TaiI ACGT 5 cut(s) 134, 508, 1006, 2377, 2565
TaqI TCGA 5 cut(s) 60, 864, 1964, 2999, 3030
TatI WGTACW 4 cut(s) 644, 1325, 2160, 2581
TauI GCSGC 6 cut(s) 116, 332, 1145, 1679, 2513, 2833
TfiI GAWTC 5 cut(s) 662, 1621, 1998, 2174, 2660
TseFI GTSAC 3 cut(s) 348, 1163, 2950
TseI GCWGC 8 cut(s) 677, 828, 1106, 1130, 1264, 1472, 2383, 2990
Tsp45I GTSAC 3 cut(s) 348, 1163, 2950
TspGWI ACGGA 1 cut(s) 467
Tth111I GACNNNGTC 1 cut(s) 464
VpaK11BI GGWCC 3 cut(s) 466, 1238, 1799
VspI ATTAAT 1 cut(s) 740
XagI CCTNNNNNAGG 1 cut(s) 193
XapI RAATTY 5 cut(s) 296, 701, 1179, 1484, 2082
XceI RCATGY 4 cut(s) 486, 1260, 1472, 2116
XcmI CCANNNNNNNNNTGG 1 cut(s) 2878
XmnI GAANNNNTTC 2 cut(s) 951, 1497
XspI CTAG 8 cut(s) 692, 696, 1323, 1476, 1766, 1929, 1979, 2792
ZrmI AGTACT 1 cut(s) 2583
Zsp2I ATGCAT 1 cut(s) 2289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.