Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006579

Physical Location & Seq

Genomic Coordinates Forward (+)

23103037 .. 23104221

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0246600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGACCTCAAGCTCTCCACCCTCCTCTGCTTCACTCTATTATTGTGCACCATTCTTATCCCAACTCTCTCCGAACTCTGCAACCCACAGGACAAGAAAGTCCTCCTTGAAATCAAGACAGCCTTCAACAATCCCTACACCTTAACTTCATGGAACCCCGATGTCGACTGCTGTACTACCTGGTACAACGTCGAATGTGATCCCATCACCAACCGCATCAACTCCCTCACCATCTTATCCTACGATCGCATCTCCGGCCAAATCCCTCCCCAAGTTGGTGATTTGCCATACCTCGAAACCCTCGTGATTCGCAAGCAACCAAATATAACCGGTCCTATCCAACCCTCCATTGCCAAGCTCAAACATCTCAAGACGCTTAGACTTGGCTGGAACAACCTCTCAGGCTCAGTCCCGGACTTCATCAGCCAACTCAAGAACCTGACCTTCCTTGAACTCTACTACAACAACCTCACTGGCTCTATCCCCAGCTCACTTTCTCAGCTACCAAATTTGGCTTCTCTTCGTCTAGACCGTAACAAGCTCACAGGTCATATTCCGAGCTCATTCGGACAATTCGTTGGTGTCATTCCAGATCTCTACCTCTCCCACAACCAGCTCACAGGCAAGATACCAACCTCATTGGGCAAAATGGACTTCAATCGCATAGACTTGTCACGTAACCTGCTCGAAGGTGATGCATCCTTCCTATTCGGGTTGAACAAGACAACCGAGATTGTAGATTTGTCCAGGAACATGCTGGAATTTGATCTGTCAAAGGCGGAGTTCACAAACAGCCTGATTTTACTAGATCTGAATCACAACAGGCTTACAGGGAGTATTCCGGAGGAGTTGACTGAAGTTAAGTTGCAGTTCTTCAATGTGAGCTATAACAGGTTGTGTGGTCAGATTCCGGTGGGTGGGAACTTGCAGAAATTCGACAACACGTCGTATTTCCATAACCGGTGCCTCTGCGGTACTCCACTCCCAAGCTGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cnd3

Protein Analysis

332

Amino Acids

37.27

Weight (kDa)

6.93

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 67	9.1e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	83 - 180	1.6e-08	Leucine-rich repeat region
LRR_8	PF13855	122 - 181	3.6e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37630
fragaria_vesca	FvH4_1g30230 FvH4_1g30230
malus_domestica	MD09G1270700.v1.1 MD17G1268900.v1.1
prunus_persica	Prupe.3G017700_v2.0.a1 Prupe.3G017700_v2.0.a1
pyrus_communis	pycom09g18180 pycom17g26750 pycom17g26760
rosa_chinensis	RchiOBHm_Chr3g0491161
rosa_laevigata	RLG00000022858
rosa_multiflora	Rmu_co8352689.1_g000001 Rmu_sc0024833.1_g000001 Rmu_ssc0000202.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393110
rosa_rugosa	Rorug03G0246600
rosa_samantha	Rh3AG297000 Rh3AG297100 Rh3BG333000 Rh3BG333100 Rh3CG330100 Rh3CG330200 Rh3DG330700 Rh3DG330800
rosa_wichuraiana	Rw3G026200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	690
AccB1I	GGYRCC	1 cut(s)	963
AccI	GTMKAC	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	841
AciI	CCGC	3 cut(s)	214, 779, 972
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	3 cut(s)	508, 761, 932
AcuI	CTGAAG	1 cut(s)	876
AfaI	GTAC	3 cut(s)	175, 185, 976
AfiI	CCNNNNNNNGG	2 cut(s)	275, 917
AflIII	ACRYGT	1 cut(s)	942
AgeI	ACCGGT	2 cut(s)	329, 960
AgsI	TTSAA	6 cut(s)	110, 127, 452, 658, 718, 877
AhdI	GACNNNNNGTC	1 cut(s)	943
AjiI	CACGTC	1 cut(s)	945
AjnI	CCWGG	2 cut(s)	179, 746
AjuI	GAANNNNNNNTTGG	2 cut(s)	499, 531
AluBI	AGCT	9 cut(s)	13, 358, 489, 502, 541, 561, 616, 885, 990
AluI	AGCT	9 cut(s)	13, 358, 489, 502, 541, 561, 616, 885, 990
Alw21I	GWGCWC	2 cut(s)	50, 563
Alw44I	GTGCAC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	841
AoxI	GGCC	1 cut(s)	256
ApaLI	GTGCAC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	990
ApoI	RAATTY	3 cut(s)	508, 761, 932
AsiGI	ACCGGT	2 cut(s)	329, 960
AspS9I	GGNCC	2 cut(s)	4, 332
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	4 cut(s)	199, 220, 290, 704
AvaII	GGWCC	2 cut(s)	4, 332
BaeGI	GKGCMC	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	963
BanII	GRGCYC	1 cut(s)	563
BauI	CACGAG	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	50, 563
BbvI	GCAGC	1 cut(s)	977
BccI	CCATC	2 cut(s)	212, 239
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BciT130I	CCWGG	2 cut(s)	181, 748
BcnI	CCSGG	1 cut(s)	413
BfaI	CTAG	2 cut(s)	527, 806
BfuAI	ACCTGC	1 cut(s)	690
BglII	AGATCT	2 cut(s)	592, 808
BisI	GCNGC	1 cut(s)	991
BlsI	GCNGC	1 cut(s)	992
Bme1390I	CCNGG	3 cut(s)	181, 413, 748
Bme18I	GGWCC	2 cut(s)	4, 332
BmeRI	GACNNNNNGTC	1 cut(s)	943
BmgBI	CACGTC	1 cut(s)	945
BmgT120I	GGNCC	2 cut(s)	4, 332
BmiI	GGNNCC	2 cut(s)	155, 965
BmrFI	CCNGG	3 cut(s)	181, 413, 748
BmsI	GCATC	4 cut(s)	225, 258, 685, 707
BpuEI	CTTGAG	2 cut(s)	353, 416
BpuMI	CCSGG	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	813
BsaWI	WCCGGW	4 cut(s)	329, 841, 910, 960
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 917
Bse118I	RCCGGY	2 cut(s)	329, 960
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	813
BseAI	TCCGGA	1 cut(s)	841
BseBI	CCWGG	2 cut(s)	181, 748
BseGI	GGATG	1 cut(s)	698
BseJI	GATNNNNATC	1 cut(s)	813
BseLI	CCNNNNNNNGG	2 cut(s)	275, 917
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	3 cut(s)	414, 420, 512
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	2 cut(s)	14, 860
BseSI	GKGCMC	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	977
BseYI	CCCAGC	1 cut(s)	485
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	1 cut(s)	963
BshTI	ACCGGT	2 cut(s)	329, 960
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	2 cut(s)	50, 563
BsiSI	CCGG	6 cut(s)	255, 330, 413, 842, 911, 961
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	275, 917
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	50, 563
Bsp13I	TCCGGA	1 cut(s)	841
Bsp143I	GATC	5 cut(s)	199, 244, 592, 766, 808
BspACI	CCGC	3 cut(s)	214, 779, 972
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	3 cut(s)	413, 419, 511
BspEI	TCCGGA	1 cut(s)	841
BspLI	GGNNCC	2 cut(s)	155, 965
BspMI	ACCTGC	1 cut(s)	690
BspPI	GGATC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	963
BsrDI	GCAATG	1 cut(s)	348
BsrFI	RCCGGY	2 cut(s)	329, 960
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	2 cut(s)	329, 960
BssMI	GATC	5 cut(s)	199, 244, 592, 766, 808
BssSI	CACGAG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	181, 748
Bst4CI	ACNGT	1 cut(s)	533
Bst6I	CTCTTC	1 cut(s)	525
BstBAI	YACGTR	1 cut(s)	677
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	4 cut(s)	377, 400, 406, 498
BstF5I	GGATG	1 cut(s)	698
BstKTI	GATC	5 cut(s)	202, 247, 595, 769, 811
BstMBI	GATC	5 cut(s)	199, 244, 592, 766, 808
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNI	CCWGG	2 cut(s)	181, 748
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	3 cut(s)	179, 411, 746
BstSLI	GKGCMC	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	977
BstX2I	RGATCY	2 cut(s)	592, 808
BstYI	RGATCY	2 cut(s)	592, 808
BsuRI	GGCC	1 cut(s)	258
BtrI	CACGTC	1 cut(s)	945
BtsCI	GGATG	1 cut(s)	698
BtsIMutI	CAGTG	1 cut(s)	471
BveI	ACCTGC	1 cut(s)	690
Cac8I	GCNNGC	1 cut(s)	314
Cfr10I	RCCGGY	2 cut(s)	329, 960
Cfr13I	GGNCC	2 cut(s)	4, 332
CseI	GACGC	1 cut(s)	382
CsiI	ACCWGGT	1 cut(s)	179
Csp6I	GTAC	3 cut(s)	174, 184, 975
CspAI	ACCGGT	2 cut(s)	329, 960
CviAII	CATG	2 cut(s)	150, 754
CviQI	GTAC	3 cut(s)	174, 184, 975
DdeI	CTNAG	4 cut(s)	377, 400, 406, 498
DpnI	GATC	5 cut(s)	201, 246, 594, 768, 810
DpnII	GATC	5 cut(s)	199, 244, 592, 766, 808
DrdI	GACNNNNNNGTC	1 cut(s)	98
DriI	GACNNNNNGTC	1 cut(s)	943
DseDI	GACNNNNNNGTC	1 cut(s)	98
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	525
Eam1105I	GACNNNNNGTC	1 cut(s)	943
EarI	CTCTTC	1 cut(s)	525
EciI	GGCGGA	1 cut(s)	794
Ecl136II	GAGCTC	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	563
Eco47I	GGWCC	2 cut(s)	4, 332
Eco53kI	GAGCTC	1 cut(s)	561
Eco57I	CTGAAG	1 cut(s)	876
EcoICRI	GAGCTC	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	179, 746
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	1 cut(s)	563
FaeI	CATG	2 cut(s)	153, 757
FaiI	YATR	8 cut(s)	151, 289, 326, 552, 665, 755, 888, 957
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 107, 139
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	2 cut(s)	149, 753
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	991
FokI	GGATG	1 cut(s)	685
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	1 cut(s)	991
FspBI	CTAG	2 cut(s)	527, 806
GluI	GCNGC	1 cut(s)	991
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	6 cut(s)	255, 330, 413, 842, 911, 961
HgaI	GACGC	1 cut(s)	382
Hin1II	CATG	2 cut(s)	153, 757
HincII	GTYRAC	2 cut(s)	166, 852
HindII	GTYRAC	2 cut(s)	166, 852
HinfI	GANTC	3 cut(s)	307, 814, 907
HpaII	CCGG	6 cut(s)	255, 330, 413, 842, 911, 961
HphI	GGTGA	4 cut(s)	199, 220, 290, 704
Hpy166II	GTNNAC	4 cut(s)	48, 166, 786, 852
Hpy188I	TCNGA	5 cut(s)	73, 558, 569, 813, 906
Hpy188III	TCNNGA	7 cut(s)	115, 304, 370, 433, 527, 590, 842
Hpy8I	GTNNAC	4 cut(s)	48, 166, 786, 852
Hpy99I	CGWCG	2 cut(s)	194, 949
HpyAV	CCTTC	4 cut(s)	133, 454, 683, 712
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4IV	ACGT	3 cut(s)	189, 676, 944
HpyCH4V	TGCA	6 cut(s)	48, 81, 698, 868, 928, 993
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	4 cut(s)	377, 400, 406, 498
HpySE526I	ACGT	3 cut(s)	189, 676, 944
Hsp92II	CATG	2 cut(s)	153, 757
Kpn2I	TCCGGA	1 cut(s)	841
Kzo9I	GATC	5 cut(s)	199, 244, 592, 766, 808
Lsp1109I	GCAGC	1 cut(s)	977
LweI	GCATC	4 cut(s)	225, 258, 685, 707
MabI	ACCWGGT	1 cut(s)	179
MaeI	CTAG	2 cut(s)	527, 806
MaeII	ACGT	3 cut(s)	189, 676, 944
MaeIII	GTNAC	3 cut(s)	533, 672, 677
MalI	GATC	5 cut(s)	201, 246, 594, 768, 810
MboI	GATC	5 cut(s)	199, 244, 592, 766, 808
MboII	GAAGA	2 cut(s)	512, 865
MflI	RGATCY	2 cut(s)	592, 808
MhlI	GDGCHC	2 cut(s)	50, 563
MluCI	AATT	4 cut(s)	508, 572, 761, 932
MmeI	TCCRAC	1 cut(s)	364
Mph1103I	ATGCAT	1 cut(s)	700
MroI	TCCGGA	1 cut(s)	841
MseI	TTAA	2 cut(s)	143, 861
MspI	CCGG	6 cut(s)	255, 330, 413, 842, 911, 961
MspR9I	CCNGG	3 cut(s)	181, 413, 748
MvaI	CCWGG	2 cut(s)	181, 748
MwoI	GCNNNNNNNGC	1 cut(s)	255
NciI	CCSGG	1 cut(s)	413
NdeII	GATC	5 cut(s)	199, 244, 592, 766, 808
NlaIII	CATG	2 cut(s)	153, 757
NlaIV	GGNNCC	2 cut(s)	155, 965
NmuCI	GTSAC	1 cut(s)	672
NsiI	ATGCAT	1 cut(s)	700
NspI	RCATGY	1 cut(s)	757
PcsI	WCGNNNNNNNCGW	3 cut(s)	300, 529, 573
PfeI	GAWTC	3 cut(s)	307, 814, 907
PfoI	TCCNGGA	2 cut(s)	411, 746
PinAI	ACCGGT	2 cut(s)	329, 960
PkrI	GCNGC	1 cut(s)	992
Ple19I	CGATCG	1 cut(s)	247
Ppu21I	YACGTR	1 cut(s)	677
Psp124BI	GAGCTC	1 cut(s)	563
Psp6I	CCWGG	2 cut(s)	179, 746
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	2 cut(s)	179, 746
PspN4I	GGNNCC	2 cut(s)	155, 965
PspPI	GGNCC	2 cut(s)	4, 332
PsuI	RGATCY	2 cut(s)	592, 808
PvuI	CGATCG	1 cut(s)	247
RsaI	GTAC	3 cut(s)	175, 185, 976
RsaNI	GTAC	3 cut(s)	174, 184, 975
SacI	GAGCTC	1 cut(s)	563
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	143, 861
SatI	GCNGC	1 cut(s)	991
Sau3AI	GATC	5 cut(s)	199, 244, 592, 766, 808
Sau96I	GGNCC	2 cut(s)	4, 332
ScrFI	CCNGG	3 cut(s)	181, 413, 748
SduI	GDGCHC	2 cut(s)	50, 563
SexAI	ACCWGGT	1 cut(s)	179
SfaNI	GCATC	4 cut(s)	225, 258, 685, 707
SinI	GGWCC	2 cut(s)	4, 332
SmlI	CTYRAG	3 cut(s)	8, 368, 431
SmoI	CTYRAG	3 cut(s)	8, 368, 431
Sse9I	AATT	4 cut(s)	508, 572, 761, 932
SsiI	CCGC	3 cut(s)	214, 779, 972
SspMI	CTAG	2 cut(s)	527, 806
SstI	GAGCTC	1 cut(s)	563
StyD4I	CCNGG	3 cut(s)	179, 411, 746
TaaI	ACNGT	1 cut(s)	533
TaiI	ACGT	3 cut(s)	192, 679, 947
TaqI	TCGA	5 cut(s)	165, 192, 294, 687, 936
TasI	AATT	4 cut(s)	508, 572, 761, 932
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	307, 814, 907
Tru1I	TTAA	2 cut(s)	143, 861
Tru9I	TTAA	2 cut(s)	143, 861
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	672
TseI	GCWGC	1 cut(s)	990
Tsp45I	GTSAC	1 cut(s)	672
TspDTI	ATGAA	2 cut(s)	138, 409
TspRI	CASTG	1 cut(s)	478
VneI	GTGCAC	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	4, 332
XapI	RAATTY	3 cut(s)	508, 761, 932
XbaI	TCTAGA	1 cut(s)	526
XceI	RCATGY	1 cut(s)	757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	2 cut(s)	527, 806
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.