Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006579

Physical Location & Seq

Genomic Coordinates Forward (+)

25053412 .. 25055793

Gene Structure 2382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g26760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGCACTGCCTTGCTGTTTTCGGCCTTTGCTTGGAGAAGGCAAGGTCATATCATTGGATTCAAGGGAAAGCTATTGAGCCTACTGAACTACTGCAATCGTTATTGCTTCCAGCGGCAAAACATTCTCACTTGGAAGTCCAAAGGATTGCAGTCAGGTGTCTTGGGCTTTTTGGGTTGTTAGAGAAAAAGCCAAGCCAGGAACTAGTAAAGCAGTTAAAGCTTTCATTTATTAAGGGACCAGGTCCAATTAGCATAGGTGCTTGCAAGGCATTATTTGATCTTGGGATGTGGCATAATCCTCAGGAAGTTGATAGGGTGATGGGCGGCTCACCACAATGTCAAGATTATGATATAACTTCTAGTCCTTTAAACCTTTCTGATACAGATGGGATATCGAACATTAAATTGCTAGATCTTTTGTATGCTGGAATCATGAAAGATGATTGGGACAATTCTTTAGCAAGTGATGAAAATGAGTCGATTCATTGTGCTCTTGGTGAGGGGTTTGCGAAAATTCTTCTTCTAAGTGAGAATTACCAAGGCATGCCTGCTTCTTTACATCCATTACTTTTATCCAAGCTCATTACCTTGTACTTCAGCAATGAATCTAAAGACTTGCAGAGGTTGAAACAGTGTTTATCTGTGTTCTTTGAGAATTACCCTTCCCTCGCAGTTAATCACAAGAAGTGTATATCCAAGGCTTTCCTTCCAGTCATGCGTTCTATGTGGCCGGGTATCAATGGCACTGCTGGAGGTTCTGCTACCGTGGTTTCTAATATGCGTAAGCGTGCAGTCCAAGTATCACTTTTTATGCTGCACATCATGCAGGCTCCCTTGTATAAAAATGGGACAGAGAAAGGAAATGATACCGGGGAACTACCAGAAGTGATAGAAGAACCTCCACTTGAGTGTGGTGAGGAGGGGCTTGCCATACGCATAGCCGCAGAGGTTGCTACTTTCGGTACAAAGAAGACACCTGCAGAGAAGGCATATGTGTCGGCATTATGCAGAGTACTTGTCATGCTTCATTTCCGGTTATCAGAGCAAGAGGCAATCCAGTTAATGAGGAGGCTTTTAATTCGTGTGGTCGAATCTGTATCAGCAGAGAAAGATCTTGTCAAAGAGTTAAGGCGGATGGCTGACCATCTCAAGGCACAAGATAGGCATCCAGATCAGGAAATGTCGCAAGATCAAGCTAATCTTATATTTGGTAAGTTAGAACTAGAGTTCAACTTGGATTTCAATGTTTCTGTTGAAATGCCGCAAACCCCAGCTCCTCGCTCAACCAAACCAGCCCGTTCCAGAAGACGAGTGGCGCTTGAAGAGGCATCTTCTGATGATGAAGATAGTTCTCCCACCTCGGTGGTTCCTAATAATCTTGTCAAAATAAGCGCTCGCTCACAGAGAGCAAGCAAGACTGCAGCACTATCGAAGATGACTGCTAATAAAGCCTTGAGGATCCATGAAGATGATGAAGAGGAGGAAGAAGGCTCGGAGGTTACATCTGATGAAGACTCAGATGGACCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cnd3

Protein Analysis

511

Amino Acids

56.55

Weight (kDa)

5.59

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37630
fragaria_vesca	FvH4_1g30230 FvH4_1g30230
malus_domestica	MD09G1270700.v1.1 MD17G1268900.v1.1
prunus_persica	Prupe.3G017700_v2.0.a1 Prupe.3G017700_v2.0.a1
pyrus_communis	pycom09g18180 pycom17g26750 pycom17g26760
rosa_chinensis	RchiOBHm_Chr3g0491161
rosa_laevigata	RLG00000022858
rosa_multiflora	Rmu_co8352689.1_g000001 Rmu_sc0024833.1_g000001 Rmu_ssc0000202.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393110
rosa_rugosa	Rorug03G0246600
rosa_samantha	Rh3AG297000 Rh3AG297100 Rh3BG333000 Rh3BG333100 Rh3CG330100 Rh3CG330200 Rh3DG330700 Rh3DG330800
rosa_wichuraiana	Rw3G026200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	985
Acc36I	ACCTGC	1 cut(s)	985
AciI	CCGC	5 cut(s)	113, 324, 942, 1132, 1262
AclWI	GGATC	2 cut(s)	1453, 1466
AcoI	YGGCCR	1 cut(s)	728
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	1 cut(s)	580
AfaI	GTAC	3 cut(s)	593, 964, 1014
AfeI	AGCGCT	1 cut(s)	1393
AfiI	CCNNNNNNNGG	2 cut(s)	31, 1150
AgsI	TTSAA	6 cut(s)	62, 628, 1231, 1243, 1256, 1322
AhlI	ACTAGT	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	195, 238
AleI	CACNNNNGTG	2 cut(s)	907, 1361
AluBI	AGCT	5 cut(s)	71, 220, 580, 1196, 1274
AluI	AGCT	5 cut(s)	71, 220, 580, 1196, 1274
Alw21I	GWGCWC	1 cut(s)	493
AlwI	GGATC	2 cut(s)	1453, 1466
Aor51HI	AGCGCT	1 cut(s)	1393
AoxI	GGCC	2 cut(s)	22, 728
ApeKI	GCWGC	2 cut(s)	814, 1421
ApoI	RAATTY	1 cut(s)	513
AspLEI	GCGC	2 cut(s)	1318, 1394
AspS9I	GGNCC	3 cut(s)	236, 242, 1523
AsuC2I	CCSGG	2 cut(s)	732, 871
AsuHPI	GGTGA	4 cut(s)	321, 328, 509, 926
AvaII	GGWCC	3 cut(s)	236, 242, 1523
AxyI	CCTNAGG	1 cut(s)	300
BamHI	GGATCC	1 cut(s)	1458
BbsI	GAAGAC	3 cut(s)	977, 1312, 1518
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	2 cut(s)	801, 1433
BccI	CCATC	5 cut(s)	313, 380, 1129, 1152, 1514
BcgI	CGANNNNNNTGC	4 cut(s)	978, 1012, 1410, 1444
BciT130I	CCWGG	2 cut(s)	197, 240
BcnI	CCSGG	2 cut(s)	732, 871
BcuI	ACTAGT	1 cut(s)	202
BfaI	CTAG	4 cut(s)	203, 360, 410, 1223
BfmI	CTRYAG	2 cut(s)	978, 1419
BfoI	RGCGCY	2 cut(s)	1319, 1395
BfuAI	ACCTGC	1 cut(s)	985
BglII	AGATCT	2 cut(s)	412, 1111
BisI	GCNGC	6 cut(s)	114, 325, 815, 942, 1262, 1422
BlsI	GCNGC	6 cut(s)	115, 326, 816, 943, 1263, 1423
BmcAI	AGTACT	1 cut(s)	1014
Bme1390I	CCNGG	4 cut(s)	197, 240, 732, 871
Bme18I	GGWCC	3 cut(s)	236, 242, 1523
BmgT120I	GGNCC	3 cut(s)	236, 242, 1523
BmiI	GGNNCC	4 cut(s)	237, 831, 1368, 1460
BmrFI	CCNGG	4 cut(s)	197, 240, 732, 871
BmsI	GCATC	2 cut(s)	1174, 1337
BpiI	GAAGAC	3 cut(s)	977, 1312, 1518
BpmI	CTGGAG	1 cut(s)	771
BpuEI	CTTGAG	3 cut(s)	926, 1133, 1474
BpuMI	CCSGG	2 cut(s)	732, 871
BsaBI	GATNNNNATC	1 cut(s)	1164
BsaJI	CCNNGG	5 cut(s)	538, 696, 765, 870, 1359
BsaWI	WCCGGW	1 cut(s)	1032
BsaXI	ACNNNNNCTCC	2 cut(s)	1258, 1288
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 1150
Bse1I	ACTGG	2 cut(s)	710, 1057
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	607
Bse8I	GATNNNNATC	1 cut(s)	1164
BseBI	CCWGG	2 cut(s)	197, 240
BseDI	CCNNGG	5 cut(s)	538, 696, 765, 870, 1359
BseGI	GGATG	4 cut(s)	291, 559, 1140, 1165
BseJI	GATNNNNATC	1 cut(s)	1164
BseLI	CCNNNNNNNGG	2 cut(s)	31, 1150
BseMI	GCAATG	1 cut(s)	607
BseMII	CTCAG	2 cut(s)	314, 1530
BseNI	ACTGG	2 cut(s)	710, 1057
BseRI	GAGGAG	4 cut(s)	932, 1081, 1266, 1493
BseXI	GCAGC	2 cut(s)	801, 1433
BseYI	CCCAGC	1 cut(s)	1270
BsgI	GTGCAG	2 cut(s)	800, 810
BshFI	GGCC	2 cut(s)	24, 730
BsiHKAI	GWGCWC	1 cut(s)	493
BsiSI	CCGG	3 cut(s)	731, 870, 1033
BslFI	GGGAC	3 cut(s)	249, 461, 862
BslI	CCNNNNNNNGG	2 cut(s)	31, 1150
BsmFI	GGGAC	3 cut(s)	249, 461, 862
BsnI	GGCC	2 cut(s)	24, 730
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp143I	GATC	6 cut(s)	277, 412, 1111, 1171, 1189, 1458
BspACI	CCGC	5 cut(s)	113, 324, 942, 1132, 1262
BspANI	GGCC	2 cut(s)	24, 730
BspCNI	CTCAG	2 cut(s)	313, 1529
BspHI	TCATGA	1 cut(s)	432
BspLI	GGNNCC	4 cut(s)	237, 831, 1368, 1460
BspMAI	CTGCAG	2 cut(s)	982, 1423
BspMI	ACCTGC	1 cut(s)	985
BspPI	GGATC	2 cut(s)	1453, 1466
BsrDI	GCAATG	1 cut(s)	607
BsrI	ACTGG	2 cut(s)	710, 1057
BssECI	CCNNGG	5 cut(s)	538, 696, 765, 870, 1359
BssMI	GATC	6 cut(s)	277, 412, 1111, 1171, 1189, 1458
BssT1I	CCWWGG	2 cut(s)	538, 696
Bst2UI	CCWGG	2 cut(s)	197, 240
Bst4CI	ACNGT	2 cut(s)	633, 766
Bst6I	CTCTTC	2 cut(s)	1317, 1470
BstAPI	GCANNNNNTGC	2 cut(s)	823, 950
BstC8I	GCNNGC	8 cut(s)	262, 545, 549, 789, 828, 927, 1396, 1411
BstDEI	CTNAG	3 cut(s)	300, 524, 1516
BstDSI	CCRYGG	1 cut(s)	765
BstF5I	GGATG	4 cut(s)	291, 559, 1140, 1165
BstH2I	RGCGCY	2 cut(s)	1319, 1395
BstHHI	GCGC	2 cut(s)	1318, 1394
BstKTI	GATC	6 cut(s)	280, 415, 1114, 1174, 1192, 1461
BstMBI	GATC	6 cut(s)	277, 412, 1111, 1171, 1189, 1458
BstMWI	GCNNNNNNNGC	6 cut(s)	217, 266, 823, 950, 986, 1448
BstNI	CCWGG	2 cut(s)	197, 240
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	4 cut(s)	195, 238, 730, 869
BstSFI	CTRYAG	2 cut(s)	978, 1419
BstV1I	GCAGC	2 cut(s)	801, 1433
BstV2I	GAAGAC	3 cut(s)	977, 1312, 1518
BstX2I	RGATCY	3 cut(s)	412, 1111, 1458
BstXI	CCANNNNNNTGG	1 cut(s)	1363
BstYI	RGATCY	3 cut(s)	412, 1111, 1458
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	24, 730
BtgI	CCRYGG	1 cut(s)	765
BtsCI	GGATG	4 cut(s)	291, 559, 1140, 1165
BtsI	GCAGTG	2 cut(s)	4, 744
BtsIMutI	CAGTG	3 cut(s)	4, 638, 744
BveI	ACCTGC	1 cut(s)	985
Cac8I	GCNNGC	8 cut(s)	262, 545, 549, 789, 828, 927, 1396, 1411
CciI	TCATGA	1 cut(s)	432
CfoI	GCGC	2 cut(s)	1318, 1394
Cfr13I	GGNCC	3 cut(s)	236, 242, 1523
CsiI	ACCWGGT	1 cut(s)	238
Csp6I	GTAC	3 cut(s)	592, 963, 1013
CviAII	CATG	6 cut(s)	433, 544, 715, 823, 1021, 1463
CviQI	GTAC	3 cut(s)	592, 963, 1013
DdeI	CTNAG	3 cut(s)	300, 524, 1516
DpnI	GATC	6 cut(s)	279, 414, 1113, 1173, 1191, 1460
DpnII	GATC	6 cut(s)	277, 412, 1111, 1171, 1189, 1458
DraI	TTTAAA	1 cut(s)	369
EaeI	YGGCCR	1 cut(s)	728
Eam1104I	CTCTTC	2 cut(s)	1317, 1470
EarI	CTCTTC	2 cut(s)	1317, 1470
EciI	GGCGGA	1 cut(s)	1147
Eco130I	CCWWGG	2 cut(s)	538, 696
Eco32I	GATATC	1 cut(s)	393
Eco47I	GGWCC	3 cut(s)	236, 242, 1523
Eco47III	AGCGCT	1 cut(s)	1393
Eco57I	CTGAAG	1 cut(s)	580
Eco81I	CCTNAGG	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	195, 238
EcoRV	GATATC	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	538, 696
ErhI	CCWWGG	2 cut(s)	538, 696
FaeI	CATG	6 cut(s)	436, 547, 718, 826, 1024, 1466
FalI	AAGNNNNNCTT	4 cut(s)	789, 821, 1185, 1217
FaqI	GGGAC	3 cut(s)	249, 461, 862
FatI	CATG	6 cut(s)	432, 543, 714, 822, 1020, 1462
FauNDI	CATATG	1 cut(s)	991
Fnu4HI	GCNGC	6 cut(s)	114, 325, 815, 942, 1262, 1422
FokI	GGATG	4 cut(s)	298, 546, 1147, 1152
Fsp4HI	GCNGC	6 cut(s)	114, 325, 815, 942, 1262, 1422
FspBI	CTAG	4 cut(s)	203, 360, 410, 1223
GlaI	GCGC	2 cut(s)	1317, 1393
GluI	GCNGC	6 cut(s)	114, 325, 815, 942, 1262, 1422
GsaI	CCCAGC	1 cut(s)	1274
GsuI	CTGGAG	1 cut(s)	771
HaeII	RGCGCY	2 cut(s)	1319, 1395
HaeIII	GGCC	2 cut(s)	24, 730
HapII	CCGG	3 cut(s)	731, 870, 1033
HhaI	GCGC	2 cut(s)	1318, 1394
Hin1II	CATG	6 cut(s)	436, 547, 718, 826, 1024, 1466
Hin6I	GCGC	2 cut(s)	1316, 1392
HinP1I	GCGC	2 cut(s)	1316, 1392
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	7 cut(s)	58, 429, 476, 481, 605, 1091, 1514
HpaII	CCGG	3 cut(s)	731, 870, 1033
HphI	GGTGA	4 cut(s)	321, 328, 509, 926
Hpy188I	TCNGA	6 cut(s)	379, 1042, 1336, 1495, 1507, 1519
Hpy188III	TCNNGA	6 cut(s)	302, 341, 433, 1169, 1175, 1302
HpyAV	CCTTC	5 cut(s)	31, 672, 716, 979, 1481
HpyCH4III	ACNGT	2 cut(s)	633, 766
HpyF10VI	GCNNNNNNNGC	6 cut(s)	217, 266, 823, 950, 986, 1448
HpyF3I	CTNAG	3 cut(s)	300, 524, 1516
Hsp92II	CATG	6 cut(s)	436, 547, 718, 826, 1024, 1466
HspAI	GCGC	2 cut(s)	1316, 1392
Kzo9I	GATC	6 cut(s)	277, 412, 1111, 1171, 1189, 1458
LmnI	GCTCC	2 cut(s)	835, 1279
Lsp1109I	GCAGC	2 cut(s)	801, 1433
LweI	GCATC	2 cut(s)	1174, 1337
MabI	ACCWGGT	1 cut(s)	238
MaeI	CTAG	4 cut(s)	203, 360, 410, 1223
MaeIII	GTNAC	1 cut(s)	1498
MalI	GATC	6 cut(s)	279, 414, 1113, 1173, 1191, 1460
MboI	GATC	6 cut(s)	277, 412, 1111, 1171, 1189, 1458
MflI	RGATCY	3 cut(s)	412, 1111, 1458
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	7 cut(s)	246, 404, 451, 513, 532, 655, 1077
MlyI	GAGTC	2 cut(s)	485, 1508
MseI	TTAA	8 cut(s)	215, 231, 368, 402, 675, 1061, 1076, 1127
MslI	CAYNNNNRTG	4 cut(s)	334, 907, 1361, 1467
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	3 cut(s)	731, 870, 1033
MspR9I	CCNGG	4 cut(s)	197, 240, 732, 871
MvaI	CCWGG	2 cut(s)	197, 240
MwoI	GCNNNNNNNGC	6 cut(s)	217, 266, 823, 950, 986, 1448
NciI	CCSGG	2 cut(s)	732, 871
NdeI	CATATG	1 cut(s)	991
NdeII	GATC	6 cut(s)	277, 412, 1111, 1171, 1189, 1458
NlaIII	CATG	6 cut(s)	436, 547, 718, 826, 1024, 1466
NlaIV	GGNNCC	4 cut(s)	237, 831, 1368, 1460
NspI	RCATGY	1 cut(s)	547
OliI	CACNNNNGTG	2 cut(s)	907, 1361
PaeI	GCATGC	1 cut(s)	547
PagI	TCATGA	1 cut(s)	432
PaqCI	CACCTGC	1 cut(s)	985
PfeI	GAWTC	5 cut(s)	58, 429, 481, 605, 1091
PflFI	GACNNNGTC	1 cut(s)	240
PkrI	GCNGC	6 cut(s)	115, 326, 816, 943, 1263, 1423
PleI	GAGTC	2 cut(s)	484, 1508
PpsI	GAGTC	2 cut(s)	484, 1508
Psp6I	CCWGG	2 cut(s)	195, 238
PspFI	CCCAGC	1 cut(s)	1270
PspGI	CCWGG	2 cut(s)	195, 238
PspN4I	GGNNCC	4 cut(s)	237, 831, 1368, 1460
PspPI	GGNCC	3 cut(s)	236, 242, 1523
PstI	CTGCAG	2 cut(s)	982, 1423
PsuI	RGATCY	3 cut(s)	412, 1111, 1458
PsyI	GACNNNGTC	1 cut(s)	240
RsaI	GTAC	3 cut(s)	593, 964, 1014
RsaNI	GTAC	3 cut(s)	592, 963, 1013
RseI	CAYNNNNRTG	4 cut(s)	334, 907, 1361, 1467
SaqAI	TTAA	8 cut(s)	215, 231, 368, 402, 675, 1061, 1076, 1127
SatI	GCNGC	6 cut(s)	114, 325, 815, 942, 1262, 1422
Sau3AI	GATC	6 cut(s)	277, 412, 1111, 1171, 1189, 1458
Sau96I	GGNCC	3 cut(s)	236, 242, 1523
ScaI	AGTACT	1 cut(s)	1014
SchI	GAGTC	2 cut(s)	485, 1508
ScrFI	CCNGG	4 cut(s)	197, 240, 732, 871
SduI	GDGCHC	1 cut(s)	493
SexAI	ACCWGGT	1 cut(s)	238
SfaNI	GCATC	2 cut(s)	1174, 1337
SfcI	CTRYAG	2 cut(s)	978, 1419
SinI	GGWCC	3 cut(s)	236, 242, 1523
SmiMI	CAYNNNNRTG	4 cut(s)	334, 907, 1361, 1467
SmlI	CTYRAG	3 cut(s)	905, 1148, 1453
SmoI	CTYRAG	3 cut(s)	905, 1148, 1453
SpeI	ACTAGT	1 cut(s)	202
SphI	GCATGC	1 cut(s)	547
Sse9I	AATT	7 cut(s)	246, 404, 451, 513, 532, 655, 1077
SsiI	CCGC	5 cut(s)	113, 324, 942, 1132, 1262
SspMI	CTAG	4 cut(s)	203, 360, 410, 1223
StyD4I	CCNGG	4 cut(s)	195, 238, 730, 869
StyI	CCWWGG	2 cut(s)	538, 696
TaaI	ACNGT	2 cut(s)	633, 766
TaqI	TCGA	4 cut(s)	395, 479, 1089, 1430
TasI	AATT	7 cut(s)	246, 404, 451, 513, 532, 655, 1077
TatI	WGTACW	2 cut(s)	591, 1012
TauI	GCSGC	4 cut(s)	116, 327, 944, 1264
TfiI	GAWTC	5 cut(s)	58, 429, 481, 605, 1091
Tru1I	TTAA	8 cut(s)	215, 231, 368, 402, 675, 1061, 1076, 1127
Tru9I	TTAA	8 cut(s)	215, 231, 368, 402, 675, 1061, 1076, 1127
TscAI	CASTG	2 cut(s)	638, 751
TseI	GCWGC	2 cut(s)	814, 1421
TspRI	CASTG	2 cut(s)	638, 751
Tth111I	GACNNNGTC	1 cut(s)	240
VpaK11BI	GGWCC	3 cut(s)	236, 242, 1523
XapI	RAATTY	1 cut(s)	513
XceI	RCATGY	1 cut(s)	547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1309
XspI	CTAG	4 cut(s)	203, 360, 410, 1223
ZrmI	AGTACT	1 cut(s)	1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.