Rmu_sc0024833.1_g000001

Condensin complex subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024833.1
Physical Location & Seq
Forward (+)
5269 .. 10386
5118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024833.1_g000001.1.cds

Sequence Viewer

Length: 1686 bp
atggagaaagccacagacgaagaagagaagcctgtaatgctcagaatcgctcaaatcctagacgaggctcgcgcctccaacgccatccacaaccggaaatgcaaggagctctacgccctccgctccaaaacggcgtcgtcttccgtgttcttcacatccttctgcaagaccctgctcccgctgttcgccttccagagacgcgccgcctccgccgagcgcatcgttcgcttcgtctccgccttcgccaccggcagaggccctgaccaaagcgacgctgctttcttggacgaattcctcaggttccttttgactgcttctactgcttctaatcggacggcgaggttccgggcctgccagattatttctgagatcattatgcaattaccggatgatgcagaagtaagcagtgaactttgggatgaagtaatagactgtatgatgttgcgtgcgggggacaagatccctgtgattcgtacagttgcagttagggcgctttcacgttttgcaagtgattgtgagaacagtgatatcgttgatttatttcttgagatgcttcctgtagaacaaattgtggaggttcggaagacaatagtgctctctctacctccttcaaatgcaaccgcacaagcaatcattgattgcacattagatgtcagtgaatcagtgcgaaaagcagcatactgtgttctagccagtaaatttcctcttcaaagcctcagtatcaagcatagaacattaattcttcggaggggacttgccgatcgttctcttgctgtttcaaaggagtgtcttaaattaatgaaagatgaatggctgaacaagtgctgcaatggagatcctttagtacttctcaagtatcttgatgtggaaacctatgaaatggtcggggagtctgtagcaggggccttgttaaaaggtggtgaaattagagtacctgaaggtgaaagtatccggcagtacatattgtctaacagtgaaagagctgaagaagactcagaacgttgcacaccaaacatccaactgatggaagcggaggttgcactttactggaggatgatatgtaggcacctgcagatggaggcacaagagaaaggctctgatgctgcttctactatgggcaccgaggcagcagtgtatgctgcagaagctacagacaacaatgaccttcttgagagaatcctgccagcaacaatttcggattatatagatctagtcaaatctcacattgatgctggttccaattatcgctttgcatgtcgacagctactattgcttggtgcaatgcttgatttttcggatacatcaaacaggaaggttgctagtgcatttgtgctggaactgctccataagcctttcgatcatgaagtagatgagtatgggaacatggttgttataggagatggaataaatcttggtggtgatcgagattggtctgatgcggtgtatgggttggcaagcaaggtgcatgctgccagtggtgaatttgaagaagttgttcttagggttgtagaggagctcgctctcccttgcagggagagaacagcagattttatgcagtggatgcactgtcttgctgtttttggcctttgcttagagaaggcaaaatcacatcagtcgatcaaagggagagctattgaacctgttgaactactgcaatctctgttgcttccggcggtattgaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

561

Amino Acids

62.45

Weight (kDa)

5.08

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1077
Acc36I ACCTGC 1 cut(s) 1077
AccB1I GGYRCC 2 cut(s) 1065, 1118
AccB7I CCANNNNNTGG 1 cut(s) 1024
AccBSI CCGCTC 1 cut(s) 123
AccI GTMKAC 1 cut(s) 1258
AccII CGCG 2 cut(s) 72, 201
AclI AACGTT 1 cut(s) 1000
AclWI GGATC 2 cut(s) 454, 830
AcsI RAATTY 3 cut(s) 290, 698, 1481
AcuI CTGAAG 2 cut(s) 957, 1005
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 4 cut(s) 475, 846, 933, 959
AfiI CCNNNNNNNGG 4 cut(s) 64, 1024, 1075, 1531
AgsI TTSAA 7 cut(s) 612, 710, 780, 1487, 1637, 1646, 1681
AluBI AGCT 6 cut(s) 109, 983, 1148, 1264, 1516, 1631
AluI AGCT 6 cut(s) 109, 983, 1148, 1264, 1516, 1631
Alw21I GWGCWC 3 cut(s) 111, 597, 1518
Alw26I GTCTC 2 cut(s) 190, 238
AlwI GGATC 2 cut(s) 454, 830
AoxI GGCC 4 cut(s) 256, 348, 903, 1582
ApeKI GCWGC 7 cut(s) 275, 674, 825, 1103, 1127, 1139, 1469
ApoI RAATTY 3 cut(s) 290, 698, 1481
AseI ATTAAT 2 cut(s) 737, 797
Asp700I GAANNNNTTC 1 cut(s) 1494
AspLEI GCGC 4 cut(s) 74, 203, 219, 493
AspS9I GGNCC 3 cut(s) 257, 348, 903
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 4 cut(s) 932, 953, 1430, 1490
AxyI CCTNAGG 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 1121
BanI GGYRCC 2 cut(s) 1065, 1118
BanII GRGCYC 2 cut(s) 111, 1518
BbsI GAAGAC 3 cut(s) 132, 590, 996
Bbv12I GWGCWC 3 cut(s) 111, 597, 1518
BbvI GCAGC 7 cut(s) 262, 686, 812, 1090, 1126, 1139, 1456
BccI CCATC 4 cut(s) 92, 1018, 1069, 1394
BceAI ACGGC 2 cut(s) 147, 351
BcgI CGANNNNNNTGC 2 cut(s) 1176, 1210
BciVI GTATCC 2 cut(s) 959, 1291
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 2 cut(s) 190, 238
BfaI CTAG 4 cut(s) 59, 689, 1211, 1320
BfmI CTRYAG 5 cut(s) 558, 894, 1070, 1140, 1149
BfoI RGCGCY 1 cut(s) 494
BfuAI ACCTGC 1 cut(s) 1077
BfuI GTATCC 2 cut(s) 959, 1291
BglII AGATCT 1 cut(s) 1207
BisI GCNGC 8 cut(s) 204, 276, 675, 826, 1104, 1128, 1140, 1470
BlsI GCNGC 8 cut(s) 205, 277, 676, 827, 1105, 1129, 1141, 1471
BmcAI AGTACT 1 cut(s) 846
Bme1390I CCNGG 1 cut(s) 347
BmgT120I GGNCC 3 cut(s) 257, 348, 903
BmiI GGNNCC 6 cut(s) 302, 344, 904, 1067, 1120, 1237
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 7 cut(s) 228, 382, 540, 1090, 1219, 1426, 1551
BpiI GAAGAC 3 cut(s) 132, 590, 996
BplI GAGNNNNNCTC 2 cut(s) 1079, 1111
BpmI CTGGAG 1 cut(s) 1069
BpuEI CTTGAG 3 cut(s) 566, 836, 1190
BpuMI CCSGG 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 1122
BsaWI WCCGGW 2 cut(s) 93, 385
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 1024, 1075, 1531
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 3 cut(s) 693, 1052, 1473
Bse21I CCTNAGG 1 cut(s) 296
Bse3DI GCAATG 2 cut(s) 835, 1287
BseDI CCNNGG 1 cut(s) 1122
BseGI GGATG 7 cut(s) 84, 155, 394, 424, 1014, 1059, 1566
BseLI CCNNNNNNNGG 4 cut(s) 64, 1024, 1075, 1531
BseMI GCAATG 2 cut(s) 835, 1287
BseMII CTCAG 5 cut(s) 55, 310, 357, 730, 1008
BseNI ACTGG 3 cut(s) 693, 1052, 1473
BseRI GAGGAG 1 cut(s) 1526
BseSI GKGCMC 1 cut(s) 1121
BseXI GCAGC 7 cut(s) 262, 686, 812, 1090, 1126, 1139, 1456
Bsh1236I CGCG 2 cut(s) 72, 201
Bsh1285I CGRYCG 1 cut(s) 763
BshFI GGCC 4 cut(s) 258, 350, 905, 1584
BshNI GGYRCC 2 cut(s) 1065, 1118
BsiEI CGRYCG 1 cut(s) 763
BsiHKAI GWGCWC 3 cut(s) 111, 597, 1518
BsiSI CCGG 6 cut(s) 94, 249, 346, 386, 952, 1670
BslFI GGGAC 2 cut(s) 467, 765
BslI CCNNNNNNNGG 4 cut(s) 64, 1024, 1075, 1531
BsmAI GTCTC 2 cut(s) 190, 238
BsmBI CGTCTC 2 cut(s) 190, 238
BsmFI GGGAC 2 cut(s) 467, 765
BsnI GGCC 4 cut(s) 258, 350, 905, 1584
Bsp1286I GDGCHC 4 cut(s) 111, 597, 1121, 1518
Bsp143I GATC 8 cut(s) 369, 459, 760, 835, 1207, 1357, 1420, 1617
BspANI GGCC 4 cut(s) 258, 350, 905, 1584
BspCNI CTCAG 5 cut(s) 54, 309, 358, 729, 1007
BspFNI CGCG 2 cut(s) 72, 201
BspHI TCATGA 1 cut(s) 1360
BspLI GGNNCC 6 cut(s) 302, 344, 904, 1067, 1120, 1237
BspMAI CTGCAG 2 cut(s) 1074, 1144
BspMI ACCTGC 1 cut(s) 1077
BspPI GGATC 2 cut(s) 454, 830
BspT107I GGYRCC 2 cut(s) 1065, 1118
BsrBI CCGCTC 1 cut(s) 123
BsrDI GCAATG 2 cut(s) 835, 1287
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 3 cut(s) 693, 1052, 1473
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 1122
BssMI GATC 8 cut(s) 369, 459, 760, 835, 1207, 1357, 1420, 1617
BssNI GRCGYC 1 cut(s) 134
Bst4CI ACNGT 6 cut(s) 434, 478, 524, 683, 974, 1568
Bst6I CTCTTC 2 cut(s) 18, 711
BstACI GRCGYC 1 cut(s) 134
BstAPI GCANNNNNTGC 2 cut(s) 1136, 1561
BstC8I GCNNGC 7 cut(s) 70, 352, 447, 1185, 1456, 1467, 1518
BstDEI CTNAG 7 cut(s) 41, 296, 366, 716, 994, 1499, 1591
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 7 cut(s) 84, 155, 394, 424, 1014, 1059, 1566
BstFNI CGCG 2 cut(s) 72, 201
BstH2I RGCGCY 1 cut(s) 494
BstHHI GCGC 4 cut(s) 74, 203, 219, 493
BstKTI GATC 8 cut(s) 372, 462, 763, 838, 1210, 1360, 1423, 1620
BstMAI GTCTC 2 cut(s) 190, 238
BstMBI GATC 8 cut(s) 369, 459, 760, 835, 1207, 1357, 1420, 1617
BstMCI CGRYCG 1 cut(s) 763
BstNSI RCATGY 2 cut(s) 1257, 1469
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 5 cut(s) 558, 894, 1070, 1140, 1149
BstSLI GKGCMC 1 cut(s) 1121
BstUI CGCG 2 cut(s) 72, 201
BstV1I GCAGC 7 cut(s) 262, 686, 812, 1090, 1126, 1139, 1456
BstV2I GAAGAC 3 cut(s) 132, 590, 996
BstX2I RGATCY 3 cut(s) 459, 835, 1207
BstYI RGATCY 3 cut(s) 459, 835, 1207
Bsu36I CCTNAGG 1 cut(s) 296
BsuI GTATCC 2 cut(s) 959, 1291
BsuRI GGCC 4 cut(s) 258, 350, 905, 1584
BtsCI GGATG 7 cut(s) 84, 155, 394, 424, 1014, 1059, 1566
BtsI GCAGTG 3 cut(s) 412, 1137, 1562
BtsIMutI CAGTG 9 cut(s) 412, 529, 661, 669, 979, 1137, 1480, 1562, 1564
BveI ACCTGC 1 cut(s) 1077
Cac8I GCNNGC 7 cut(s) 70, 352, 447, 1185, 1456, 1467, 1518
CciI TCATGA 1 cut(s) 1360
CfoI GCGC 4 cut(s) 74, 203, 219, 493
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 3 cut(s) 257, 348, 903
CseI GACGC 3 cut(s) 123, 207, 281
Csp6I GTAC 4 cut(s) 474, 845, 932, 958
CviAII CATG 4 cut(s) 1254, 1361, 1384, 1466
CviQI GTAC 4 cut(s) 474, 845, 932, 958
DdeI CTNAG 7 cut(s) 41, 296, 366, 716, 994, 1499, 1591
DpnI GATC 8 cut(s) 371, 461, 762, 837, 1209, 1359, 1422, 1619
DpnII GATC 8 cut(s) 369, 459, 760, 835, 1207, 1357, 1420, 1617
Eam1104I CTCTTC 2 cut(s) 18, 711
EarI CTCTTC 2 cut(s) 18, 711
EciI GGCGGA 2 cut(s) 199, 226
Ecl136II GAGCTC 2 cut(s) 109, 1516
Eco24I GRGCYC 2 cut(s) 111, 1518
Eco32I GATATC 1 cut(s) 529
Eco53kI GAGCTC 2 cut(s) 109, 1516
Eco57I CTGAAG 2 cut(s) 957, 1005
Eco81I CCTNAGG 1 cut(s) 296
EcoICRI GAGCTC 2 cut(s) 109, 1516
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 2 cut(s) 257, 903
EcoRI GAATTC 1 cut(s) 290
EcoRV GATATC 1 cut(s) 529
EcoT38I GRGCYC 2 cut(s) 111, 1518
Esp3I CGTCTC 2 cut(s) 190, 238
FaeI CATG 4 cut(s) 1257, 1364, 1387, 1469
FalI AAGNNNNNCTT 2 cut(s) 1482, 1514
FaqI GGGAC 2 cut(s) 467, 765
FatI CATG 4 cut(s) 1253, 1360, 1383, 1465
FauI CCCGC 2 cut(s) 186, 442
FblI GTMKAC 1 cut(s) 1258
Fnu4HI GCNGC 8 cut(s) 204, 276, 675, 826, 1104, 1128, 1140, 1470
FokI GGATG 7 cut(s) 71, 142, 401, 431, 1001, 1066, 1573
FriOI GRGCYC 2 cut(s) 111, 1518
Fsp4HI GCNGC 8 cut(s) 204, 276, 675, 826, 1104, 1128, 1140, 1470
FspBI CTAG 4 cut(s) 59, 689, 1211, 1320
GlaI GCGC 4 cut(s) 73, 202, 218, 492
GluI GCNGC 8 cut(s) 204, 276, 675, 826, 1104, 1128, 1140, 1470
GsuI CTGGAG 1 cut(s) 1069
HaeII RGCGCY 1 cut(s) 494
HaeIII GGCC 4 cut(s) 258, 350, 905, 1584
HapII CCGG 6 cut(s) 94, 249, 346, 386, 952, 1670
HgaI GACGC 3 cut(s) 123, 207, 281
HhaI GCGC 4 cut(s) 74, 203, 219, 493
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 4 cut(s) 1257, 1364, 1387, 1469
Hin6I GCGC 4 cut(s) 72, 201, 217, 491
HinP1I GCGC 4 cut(s) 72, 201, 217, 491
HincII GTYRAC 1 cut(s) 1259
HindII GTYRAC 1 cut(s) 1259
HinfI GANTC 6 cut(s) 45, 469, 659, 890, 992, 1176
HpaII CCGG 6 cut(s) 94, 249, 346, 386, 952, 1670
HphI GGTGA 4 cut(s) 932, 953, 1430, 1490
Hpy166II GTNNAC 2 cut(s) 410, 1259
Hpy188III TCNNGA 6 cut(s) 193, 545, 860, 1169, 1361, 1424
Hpy8I GTNNAC 2 cut(s) 410, 1259
Hpy99I CGWCG 2 cut(s) 139, 275
HpyAV CCTTC 8 cut(s) 169, 199, 250, 618, 932, 1175, 1306, 1591
HpyCH4III ACNGT 6 cut(s) 434, 478, 524, 683, 974, 1568
HpyCH4IV ACGT 2 cut(s) 499, 1000
HpyF3I CTNAG 7 cut(s) 41, 296, 366, 716, 994, 1499, 1591
HpySE526I ACGT 2 cut(s) 499, 1000
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 4 cut(s) 1257, 1364, 1387, 1469
HspAI GCGC 4 cut(s) 72, 201, 217, 491
Kzo9I GATC 8 cut(s) 369, 459, 760, 835, 1207, 1357, 1420, 1617
LmnI GCTCC 5 cut(s) 106, 128, 180, 1347, 1513
Lsp1109I GCAGC 7 cut(s) 262, 686, 812, 1090, 1126, 1139, 1456
LweI GCATC 7 cut(s) 228, 382, 540, 1090, 1219, 1426, 1551
MaeI CTAG 4 cut(s) 59, 689, 1211, 1320
MaeII ACGT 2 cut(s) 499, 1000
MalI GATC 8 cut(s) 371, 461, 762, 837, 1209, 1359, 1422, 1619
MbiI CCGCTC 1 cut(s) 123
MboI GATC 8 cut(s) 369, 459, 760, 835, 1207, 1357, 1420, 1617
MflI RGATCY 3 cut(s) 459, 835, 1207
MhlI GDGCHC 4 cut(s) 111, 597, 1121, 1518
MlyI GAGTC 2 cut(s) 899, 986
MmeI TCCRAC 2 cut(s) 102, 1042
MroXI GAANNNNTTC 1 cut(s) 1494
MseI TTAA 4 cut(s) 737, 792, 797, 911
MslI CAYNNNNRTG 1 cut(s) 1227
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 6 cut(s) 94, 249, 346, 386, 952, 1670
MspR9I CCNGG 1 cut(s) 347
MvnI CGCG 2 cut(s) 72, 201
NciI CCSGG 1 cut(s) 347
NdeII GATC 8 cut(s) 369, 459, 760, 835, 1207, 1357, 1420, 1617
NlaIII CATG 4 cut(s) 1257, 1364, 1387, 1469
NlaIV GGNNCC 6 cut(s) 302, 344, 904, 1067, 1120, 1237
NmeAIII GCCGAG 1 cut(s) 238
NspI RCATGY 2 cut(s) 1257, 1469
PaeI GCATGC 1 cut(s) 1469
PagI TCATGA 1 cut(s) 1360
PaqCI CACCTGC 1 cut(s) 1077
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 1494
PfeI GAWTC 4 cut(s) 45, 469, 659, 1176
PflMI CCANNNNNTGG 1 cut(s) 1024
PkrI GCNGC 8 cut(s) 205, 277, 676, 827, 1105, 1129, 1141, 1471
Ple19I CGATCG 1 cut(s) 763
PleI GAGTC 2 cut(s) 898, 986
PpsI GAGTC 2 cut(s) 898, 986
PshBI ATTAAT 2 cut(s) 737, 797
Psp124BI GAGCTC 2 cut(s) 111, 1518
Psp1406I AACGTT 1 cut(s) 1000
PspN4I GGNNCC 6 cut(s) 302, 344, 904, 1067, 1120, 1237
PspPI GGNCC 3 cut(s) 257, 348, 903
PstI CTGCAG 2 cut(s) 1074, 1144
PsuI RGATCY 3 cut(s) 459, 835, 1207
PvuI CGATCG 1 cut(s) 763
RsaI GTAC 4 cut(s) 475, 846, 933, 959
RsaNI GTAC 4 cut(s) 474, 845, 932, 958
RseI CAYNNNNRTG 1 cut(s) 1227
SacI GAGCTC 2 cut(s) 111, 1518
SalI GTCGAC 1 cut(s) 1257
SaqAI TTAA 4 cut(s) 737, 792, 797, 911
SatI GCNGC 8 cut(s) 204, 276, 675, 826, 1104, 1128, 1140, 1470
Sau3AI GATC 8 cut(s) 369, 459, 760, 835, 1207, 1357, 1420, 1617
Sau96I GGNCC 3 cut(s) 257, 348, 903
ScaI AGTACT 1 cut(s) 846
SchI GAGTC 2 cut(s) 899, 986
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 4 cut(s) 111, 597, 1121, 1518
SfaNI GCATC 7 cut(s) 228, 382, 540, 1090, 1219, 1426, 1551
SfcI CTRYAG 5 cut(s) 558, 894, 1070, 1140, 1149
SmiMI CAYNNNNRTG 1 cut(s) 1227
SmlI CTYRAG 3 cut(s) 545, 851, 1169
SmoI CTYRAG 3 cut(s) 545, 851, 1169
SphI GCATGC 1 cut(s) 1469
SspMI CTAG 4 cut(s) 59, 689, 1211, 1320
SstI GAGCTC 2 cut(s) 111, 1518
StyD4I CCNGG 1 cut(s) 345
TaaI ACNGT 6 cut(s) 434, 478, 524, 683, 974, 1568
TaiI ACGT 2 cut(s) 502, 1003
TaqI TCGA 4 cut(s) 1258, 1356, 1423, 1616
TatI WGTACW 2 cut(s) 844, 957
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 4 cut(s) 45, 469, 659, 1176
Tru1I TTAA 4 cut(s) 737, 792, 797, 911
Tru9I TTAA 4 cut(s) 737, 792, 797, 911
TscAI CASTG 9 cut(s) 412, 529, 661, 669, 979, 1137, 1480, 1562, 1571
TseI GCWGC 7 cut(s) 275, 674, 825, 1103, 1127, 1139, 1469
TspDTI ATGAA 5 cut(s) 435, 815, 822, 891, 1377
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 9 cut(s) 412, 529, 661, 669, 979, 1137, 1480, 1562, 1571
Van91I CCANNNNNTGG 1 cut(s) 1024
VspI ATTAAT 2 cut(s) 737, 797
XagI CCTNNNNNAGG 1 cut(s) 62
XapI RAATTY 3 cut(s) 290, 698, 1481
XceI RCATGY 2 cut(s) 1257, 1469
XmiI GTMKAC 1 cut(s) 1258
XmnI GAANNNNTTC 1 cut(s) 1494
XspI CTAG 4 cut(s) 59, 689, 1211, 1320
ZrmI AGTACT 1 cut(s) 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.