Rh3DG330700

Condensin complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0006579
Physical Location & Seq
Reverse (-)
36693143 .. 36695287
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG330700.1

Sequence Viewer

Length: 816 bp
ATGTGGCCCGGTGTCAATGGCAATGCTGGAGGTTCTGCGTCTGTGGTGTCTAATATGCGTAAACGTGCAGTCCAAGTATTACGTTTCATGCTGCAGATGATCCAGGCCCCTCTATATGCAAAGGCGACCGAGGATGACAGAAACACTAGGGACCAACCAGAAGTTATAGATGGTACCGTGGAACCTCCACTTGAGAGTGGGGAGGAAGGGCTTGCAATACGCATAGCCACAGAGGTGGCAGCCTTCCCTACAAAGAAGACTCCTGCAGAGAGGTCATATGTGTCAGCATTATGTAGAATACTTGTTTTACTCCAATTTCGGGTATCAGAGCAAGAAGCAATCCAGTTAATGAGGAGGCTTTTAGTTCGTGTGGCTGAATCTGTATTGGCAGAGAAAGATCTTGTGAAGGAGTTGAGGCGAATGGCTGAGCGTCTCAAGGCATTAGATAAACATCCTGACCTGGAAATATCACAAGATCAAGCTAATCTTATATTTGGAAGGTTAGAACTAGACTTCAACTTGGAATTCAATATATCTGCTGAAATGCCGCAAACACCAGCTCCTTGCTCAAGCAGACCAACACGTACCAGAAGAAGAGTCAGGCAAGAGGAGGAATCTTCTGATGAAGATAGTTCGCCCACCTCTGTTGTTCCTAGTAGTGTTGGTCCTATGAGCTCTCGTTCACAGAGAGCAAGCAAGACTGCAGCACTGACCAAGATAACGACTGCCATTACAGCCCCCACGATTGATGAAGATGATGAAGAGGAAGAAAGCTCAGGGGTAACATCTGATGACGATTCTGATGGCTCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cnd3

Protein Analysis

271

Amino Acids

29.9

Weight (kDa)

4.83

Isoelectric Point (pI)

67.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 1 cut(s) 548
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 524
AfaI GTAC 2 cut(s) 175, 586
AfiI CCNNNNNNNGG 1 cut(s) 319
AflIII ACRYGT 1 cut(s) 581
AgsI TTSAA 2 cut(s) 517, 529
AjnI CCWGG 2 cut(s) 102, 459
AleI CACNNNNGTG 1 cut(s) 233
AluBI AGCT 4 cut(s) 482, 560, 675, 774
AluI AGCT 4 cut(s) 482, 560, 675, 774
Alw21I GWGCWC 1 cut(s) 677
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 1 cut(s) 94
AoxI GGCC 2 cut(s) 5, 105
ApeKI GCWGC 3 cut(s) 91, 239, 704
ApoI RAATTY 1 cut(s) 524
Asp718I GGTACC 1 cut(s) 173
AspS9I GGNCC 4 cut(s) 6, 106, 151, 665
AsuC2I CCSGG 1 cut(s) 9
AvaII GGWCC 2 cut(s) 151, 665
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 677
BbsI GAAGAC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 677
BbvI GCAGC 3 cut(s) 78, 251, 716
BccI CCATC 2 cut(s) 164, 797
BciT130I CCWGG 2 cut(s) 104, 461
BcnI CCSGG 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 3 cut(s) 147, 509, 654
BfmI CTRYAG 3 cut(s) 92, 264, 702
BglII AGATCT 1 cut(s) 397
BisI GCNGC 4 cut(s) 92, 240, 548, 705
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 4 cut(s) 93, 241, 549, 706
Bme1390I CCNGG 3 cut(s) 9, 104, 461
Bme18I GGWCC 2 cut(s) 151, 665
BmgT120I GGNCC 4 cut(s) 6, 106, 151, 665
BmiI GGNNCC 4 cut(s) 108, 152, 175, 183
BmrFI CCNGG 3 cut(s) 9, 104, 461
BpiI GAAGAC 1 cut(s) 263
BpmI CTGGAG 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 775
Bpu1102I GCTNAGC 1 cut(s) 426
BpuEI CTTGAG 3 cut(s) 212, 419, 553
BpuMI CCSGG 1 cut(s) 9
BsaAI YACGTR 1 cut(s) 584
BsaBI GATNNNNATC 1 cut(s) 450
BsaJI CCNNGG 2 cut(s) 129, 177
BsaXI ACNNNNNCTCC 2 cut(s) 544, 574
Bsc4I CCNNNNNNNGG 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 2 cut(s) 104, 461
BseDI CCNNGG 2 cut(s) 129, 177
BseGI GGATG 2 cut(s) 139, 451
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 319
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 2 cut(s) 417, 789
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 2 cut(s) 367, 623
BseXI GCAGC 3 cut(s) 78, 251, 716
BsgI GTGCAG 1 cut(s) 87
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 2 cut(s) 7, 107
BshNI GGYRCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 677
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 437
BsmBI CGTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 2 cut(s) 7, 107
Bsp1286I GDGCHC 1 cut(s) 677
Bsp143I GATC 3 cut(s) 99, 397, 475
Bsp1720I GCTNAGC 1 cut(s) 426
BspACI CCGC 1 cut(s) 548
BspANI GGCC 2 cut(s) 7, 107
BspCNI CTCAG 2 cut(s) 418, 788
BspLI GGNNCC 4 cut(s) 108, 152, 175, 183
BspMAI CTGCAG 3 cut(s) 96, 268, 706
BspPI GGATC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 28
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 129, 177
BssMI GATC 3 cut(s) 99, 397, 475
Bst2UI CCWGG 2 cut(s) 104, 461
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 2 cut(s) 589, 756
BstBAI YACGTR 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 213, 694
BstDEI CTNAG 2 cut(s) 426, 775
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 2 cut(s) 139, 451
BstKTI GATC 3 cut(s) 102, 400, 478
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 3 cut(s) 99, 397, 475
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 734
BstNI CCWGG 2 cut(s) 104, 461
BstSCI CCNGG 3 cut(s) 7, 102, 459
BstSFI CTRYAG 3 cut(s) 92, 264, 702
BstV1I GCAGC 3 cut(s) 78, 251, 716
BstV2I GAAGAC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 397
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 2 cut(s) 7, 107
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 139, 451
BtsIMutI CAGTG 1 cut(s) 707
Cac8I GCNNGC 2 cut(s) 213, 694
Cfr13I GGNCC 4 cut(s) 6, 106, 151, 665
CseI GACGC 2 cut(s) 27, 419
Csp6I GTAC 2 cut(s) 174, 585
CspCI CAANNNNNGTGG 2 cut(s) 628, 663
CviAII CATG 1 cut(s) 88
CviQI GTAC 2 cut(s) 174, 585
DdeI CTNAG 2 cut(s) 426, 775
DpnI GATC 3 cut(s) 101, 399, 477
DpnII GATC 3 cut(s) 99, 397, 475
Eam1104I CTCTTC 2 cut(s) 589, 756
EarI CTCTTC 2 cut(s) 589, 756
Ecl136II GAGCTC 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 677
Eco47I GGWCC 2 cut(s) 151, 665
Eco53kI GAGCTC 1 cut(s) 675
EcoICRI GAGCTC 1 cut(s) 675
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 524
EcoRII CCWGG 2 cut(s) 102, 459
EcoT38I GRGCYC 1 cut(s) 677
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 1 cut(s) 91
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 87
FauNDI CATATG 1 cut(s) 277
Fnu4HI GCNGC 4 cut(s) 92, 240, 548, 705
FokI GGATG 2 cut(s) 146, 438
FriOI GRGCYC 1 cut(s) 677
Fsp4HI GCNGC 4 cut(s) 92, 240, 548, 705
FspBI CTAG 3 cut(s) 147, 509, 654
GluI GCNGC 4 cut(s) 92, 240, 548, 705
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 2 cut(s) 7, 107
HapII CCGG 1 cut(s) 9
HgaI GACGC 2 cut(s) 27, 419
Hin1II CATG 1 cut(s) 91
HinfI GANTC 5 cut(s) 259, 377, 597, 614, 797
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 2 cut(s) 62, 683
Hpy188I TCNGA 5 cut(s) 328, 622, 790, 802, 811
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 2 cut(s) 62, 683
HpyAV CCTTC 4 cut(s) 200, 253, 400, 492
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 3 cut(s) 64, 82, 583
HpyCH4V TGCA 6 cut(s) 68, 94, 119, 215, 266, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 734
HpyF3I CTNAG 2 cut(s) 426, 775
HpySE526I ACGT 3 cut(s) 64, 82, 583
Hsp92II CATG 1 cut(s) 91
KpnI GGTACC 1 cut(s) 177
Kzo9I GATC 3 cut(s) 99, 397, 475
LmnI GCTCC 1 cut(s) 565
Lsp1109I GCAGC 3 cut(s) 78, 251, 716
MaeI CTAG 3 cut(s) 147, 509, 654
MaeII ACGT 3 cut(s) 64, 82, 583
MaeIII GTNAC 1 cut(s) 781
MalI GATC 3 cut(s) 101, 399, 477
MboI GATC 3 cut(s) 99, 397, 475
MboII GAAGA 8 cut(s) 268, 603, 606, 609, 638, 764, 773, 779
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 677
MluCI AATT 2 cut(s) 314, 524
MlyI GAGTC 2 cut(s) 253, 606
MseI TTAA 1 cut(s) 347
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 3 cut(s) 9, 104, 461
MvaI CCWGG 2 cut(s) 104, 461
MwoI GCNNNNNNNGC 1 cut(s) 734
NciI CCSGG 1 cut(s) 9
NdeI CATATG 1 cut(s) 277
NdeII GATC 3 cut(s) 99, 397, 475
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 4 cut(s) 108, 152, 175, 183
OliI CACNNNNGTG 1 cut(s) 233
PfeI GAWTC 3 cut(s) 377, 614, 797
PkrI GCNGC 4 cut(s) 93, 241, 549, 706
PleI GAGTC 2 cut(s) 253, 605
PpsI GAGTC 2 cut(s) 253, 605
Ppu21I YACGTR 1 cut(s) 584
Psp124BI GAGCTC 1 cut(s) 677
Psp6I CCWGG 2 cut(s) 102, 459
PspGI CCWGG 2 cut(s) 102, 459
PspN4I GGNNCC 4 cut(s) 108, 152, 175, 183
PspPI GGNCC 4 cut(s) 6, 106, 151, 665
PstI CTGCAG 3 cut(s) 96, 268, 706
PsuI RGATCY 1 cut(s) 397
RsaI GTAC 2 cut(s) 175, 586
RsaNI GTAC 2 cut(s) 174, 585
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 677
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 4 cut(s) 92, 240, 548, 705
Sau3AI GATC 3 cut(s) 99, 397, 475
Sau96I GGNCC 4 cut(s) 6, 106, 151, 665
SchI GAGTC 2 cut(s) 253, 606
ScrFI CCNGG 3 cut(s) 9, 104, 461
SduI GDGCHC 1 cut(s) 677
SfcI CTRYAG 3 cut(s) 92, 264, 702
SinI GGWCC 2 cut(s) 151, 665
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 3 cut(s) 191, 434, 568
SmoI CTYRAG 3 cut(s) 191, 434, 568
Sse9I AATT 2 cut(s) 314, 524
SsiI CCGC 1 cut(s) 548
SspMI CTAG 3 cut(s) 147, 509, 654
SstI GAGCTC 1 cut(s) 677
StyD4I CCNGG 3 cut(s) 7, 102, 459
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 3 cut(s) 67, 85, 586
TaqII GACCGA 1 cut(s) 143
TasI AATT 2 cut(s) 314, 524
TauI GCSGC 1 cut(s) 550
TfiI GAWTC 3 cut(s) 377, 614, 797
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TscAI CASTG 1 cut(s) 714
TseI GCWGC 3 cut(s) 91, 239, 704
TspDTI ATGAA 4 cut(s) 76, 639, 765, 774
TspRI CASTG 1 cut(s) 714
VpaK11BI GGWCC 2 cut(s) 151, 665
XapI RAATTY 1 cut(s) 524
XspI CTAG 3 cut(s) 147, 509, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.