Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003193

Physical Location & Seq

Genomic Coordinates Reverse (-)

40696114 .. 40697247

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1327200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCAATTTTGAGGCGAGCACTGACAGCTGGTCGAACCTGGCGATCCGTCCCCGTCCGTCAAACCCTAAACCCTAATCCTCCTCCGCGCGCTTTCTCACCTCACCTCCCATTTCCTAGCCTTCTCTGCCACCGCACTTTGGAGCACCAATTTCATACCACTGCGTCTGAGATTGTGTTGGTTGGTTTGGCAGCTGGTTTGACCGCACTTGGGGTCAGAGGTCTGGCTCAAACGTCTGCAAACTTGGCTAAATTGTCTGCGTTTCTAGAGAGCGTAGTGGGAAGAGAGTTGAGACTACAAGCAACTGACAGAACGTTGGCCCATGCACTAAATGACTCCTACCTGGACAGTAAAGATATTGATATTTCTAAACCCGCTTTGCGCTTCATTCCTAGTGCTGCTGAGGGACAAAAGGTTTTAATCAAGTTCCAAACTCCTGCGACTCGTGACGTTGCACAACTGATTGCAAATATTGCTTCTGATCGTGGATTAATAATAAAAAGTGGTAGTGGTTTACATGCGCGCATCCACTATTTTTTTCCTTCTCGCAGGTATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

AAA

Protein Analysis

187

Amino Acids

20.37

Weight (kDa)

10.64

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04180 AT4G04180
fragaria_vesca	FvH4_3g01380 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890
malus_domestica	MD10G1327000.v1.1 MD10G1327200.v1.1
prunus_persica	Prupe.4G014800_v2.0.a1 Prupe.4G015000_v2.0.a1 Prupe.4G015000_v2.0.a1
pyrus_communis	pycom10g27670
rosa_chinensis	RchiOBHm_Chr5g0002011 RchiOBHm_Chr5g0002051
rosa_laevigata	RLG00000025404 RLG00000030988 RLG00000030992
rosa_multiflora	Rmu_sc0000378.1_g000019 Rmu_sc0012328.1_g000001 Rmu_sc0017901.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074350 Rroxscaffold_6G00424700
rosa_rugosa	Rorug04G0394300
rosa_samantha	Rh3DG064500 Rh5AG015500 Rh5AG015700 Rh5AG015800 Rh5BG019100 Rh5CG016800 Rh5CG017100 Rh5DG017400
rosa_wichuraiana	Rw5G001520 Rw5G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	540
AccII	CGCG	3 cut(s)	88, 90, 523
AciI	CCGC	4 cut(s)	86, 133, 204, 375
AclI	AACGTT	1 cut(s)	314
AclWI	GGATC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	139, 210
AhdI	GACNNNNNGTC	1 cut(s)	30
AjnI	CCWGG	2 cut(s)	38, 342
AluBI	AGCT	2 cut(s)	29, 194
AluI	AGCT	2 cut(s)	29, 194
Alw21I	GWGCWC	2 cut(s)	22, 147
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	2 cut(s)	191, 398
AseI	ATTAAT	1 cut(s)	491
AspLEI	GCGC	5 cut(s)	90, 92, 384, 523, 525
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	2 cut(s)	90, 95
BauI	CACGAG	1 cut(s)	444
Bbv12I	GWGCWC	2 cut(s)	22, 147
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	203, 385
BciT130I	CCWGG	2 cut(s)	40, 344
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	3 cut(s)	117, 266, 393
BfuAI	ACCTGC	1 cut(s)	540
BisI	GCNGC	2 cut(s)	192, 399
BlsI	GCNGC	2 cut(s)	193, 400
Bme1390I	CCNGG	2 cut(s)	40, 344
BmeRI	GACNNNNNGTC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	319
BmrFI	CCNGG	2 cut(s)	40, 344
BmsI	GCATC	1 cut(s)	534
Bpu10I	CCTNAGC	1 cut(s)	402
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 210
BseBI	CCWGG	2 cut(s)	40, 344
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	139, 210
BseMII	CTCAG	2 cut(s)	159, 393
BsePI	GCGCGC	2 cut(s)	88, 521
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	203, 385
Bsh1236I	CGCG	3 cut(s)	88, 90, 523
BshFI	GGCC	1 cut(s)	320
BsiHKAI	GWGCWC	2 cut(s)	22, 147
BslFI	GGGAC	2 cut(s)	35, 420
BslI	CCNNNNNNNGG	2 cut(s)	139, 210
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	2 cut(s)	35, 420
BsnI	GGCC	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	22, 147
Bsp143I	GATC	2 cut(s)	44, 481
BspACI	CCGC	4 cut(s)	86, 133, 204, 375
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	2 cut(s)	160, 394
BspFNI	CGCG	3 cut(s)	88, 90, 523
BspMI	ACCTGC	1 cut(s)	540
BspPI	GGATC	1 cut(s)	39
BssHII	GCGCGC	2 cut(s)	88, 521
BssMI	GATC	2 cut(s)	44, 481
BssSI	CACGAG	1 cut(s)	444
Bst2BI	CACGAG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	40, 344
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	277
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstC8I	GCNNGC	3 cut(s)	18, 90, 523
BstDEI	CTNAG	2 cut(s)	168, 402
BstF5I	GGATG	1 cut(s)	525
BstFNI	CGCG	3 cut(s)	88, 90, 523
BstHHI	GCGC	5 cut(s)	90, 92, 384, 523, 525
BstKTI	GATC	2 cut(s)	47, 484
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	2 cut(s)	44, 481
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 126, 245, 473
BstNI	CCWGG	2 cut(s)	40, 344
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	2 cut(s)	38, 342
BstUI	CGCG	3 cut(s)	88, 90, 523
BstV1I	GCAGC	2 cut(s)	203, 385
BsuRI	GGCC	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	525
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	20, 159
BveI	ACCTGC	1 cut(s)	540
Cac8I	GCNNGC	3 cut(s)	18, 90, 523
CfoI	GCGC	5 cut(s)	90, 92, 384, 523, 525
Cfr13I	GGNCC	1 cut(s)	319
CseI	GACGC	1 cut(s)	153
CviAII	CATG	2 cut(s)	323, 518
CviJI	RGCY	6 cut(s)	29, 120, 194, 227, 248, 320
CviKI_1	RGCY	6 cut(s)	29, 120, 194, 227, 248, 320
DdeI	CTNAG	2 cut(s)	168, 402
DpnI	GATC	2 cut(s)	46, 483
DpnII	GATC	2 cut(s)	44, 481
DriI	GACNNNNNGTC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	277
Eam1105I	GACNNNNNGTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	38, 342
FaeI	CATG	2 cut(s)	326, 521
FaiI	YATR	3 cut(s)	156, 324, 519
FaqI	GGGAC	2 cut(s)	35, 420
FatI	CATG	2 cut(s)	322, 517
FauI	CCCGC	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	192, 399
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	2 cut(s)	192, 399
FspBI	CTAG	3 cut(s)	117, 266, 393
GlaI	GCGC	5 cut(s)	89, 91, 383, 522, 524
GluI	GCNGC	2 cut(s)	192, 399
HaeIII	GGCC	1 cut(s)	320
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	5 cut(s)	90, 92, 384, 523, 525
Hin1II	CATG	2 cut(s)	326, 521
Hin6I	GCGC	5 cut(s)	88, 90, 382, 521, 523
HinP1I	GCGC	5 cut(s)	88, 90, 382, 521, 523
HinfI	GANTC	2 cut(s)	335, 442
HphI	GGTGA	2 cut(s)	90, 95
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	3 cut(s)	169, 218, 481
Hpy188III	TCNNGA	2 cut(s)	266, 446
Hpy8I	GTNNAC	1 cut(s)	515
HpyAV	CCTTC	2 cut(s)	131, 552
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	3 cut(s)	233, 314, 450
HpyCH4V	TGCA	4 cut(s)	239, 326, 455, 467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 126, 245, 473
HpyF3I	CTNAG	2 cut(s)	168, 402
HpySE526I	ACGT	3 cut(s)	233, 314, 450
Hsp92II	CATG	2 cut(s)	326, 521
HspAI	GCGC	5 cut(s)	88, 90, 382, 521, 523
Kzo9I	GATC	2 cut(s)	44, 481
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	9 cut(s)	15, 25, 52, 180, 209, 329, 356, 450, 535
Lsp1109I	GCAGC	2 cut(s)	203, 385
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	3 cut(s)	117, 266, 393
MaeII	ACGT	3 cut(s)	233, 314, 450
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	2 cut(s)	46, 483
MboI	GATC	2 cut(s)	44, 481
MboII	GAAGA	1 cut(s)	294
MhlI	GDGCHC	2 cut(s)	22, 147
MluCI	AATT	3 cut(s)	6, 149, 251
MlyI	GAGTC	2 cut(s)	329, 436
MnlI	CCTC	7 cut(s)	6, 90, 93, 111, 116, 212, 397
MseI	TTAA	2 cut(s)	419, 491
MspA1I	CMGCKG	2 cut(s)	29, 194
MspR9I	CCNGG	2 cut(s)	40, 344
MvaI	CCWGG	2 cut(s)	40, 344
MvnI	CGCG	3 cut(s)	88, 90, 523
MwoI	GCNNNNNNNGC	4 cut(s)	26, 126, 245, 473
NdeII	GATC	2 cut(s)	44, 481
NlaIII	CATG	2 cut(s)	326, 521
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	1 cut(s)	521
PauI	GCGCGC	2 cut(s)	88, 521
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	193, 400
PleI	GAGTC	2 cut(s)	329, 436
PpsI	GAGTC	2 cut(s)	329, 436
PshBI	ATTAAT	1 cut(s)	491
Psp1406I	AACGTT	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	38, 342
PspGI	CCWGG	2 cut(s)	38, 342
PspPI	GGNCC	1 cut(s)	319
PteI	GCGCGC	2 cut(s)	88, 521
PvuII	CAGCTG	2 cut(s)	29, 194
SaqAI	TTAA	2 cut(s)	419, 491
SatI	GCNGC	2 cut(s)	192, 399
Sau3AI	GATC	2 cut(s)	44, 481
Sau96I	GGNCC	1 cut(s)	319
SchI	GAGTC	2 cut(s)	329, 436
ScrFI	CCNGG	2 cut(s)	40, 344
SduI	GDGCHC	2 cut(s)	22, 147
SfaNI	GCATC	1 cut(s)	534
Sse9I	AATT	3 cut(s)	6, 149, 251
SsiI	CCGC	4 cut(s)	86, 133, 204, 375
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	3 cut(s)	117, 266, 393
StyD4I	CCNGG	2 cut(s)	38, 342
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	3 cut(s)	236, 317, 453
TaqI	TCGA	1 cut(s)	34
TasI	AATT	3 cut(s)	6, 149, 251
Tru1I	TTAA	2 cut(s)	419, 491
Tru9I	TTAA	2 cut(s)	419, 491
TscAI	CASTG	2 cut(s)	27, 166
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	191, 398
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	143, 376
TspGWI	ACGGA	2 cut(s)	37, 47
TspRI	CASTG	2 cut(s)	27, 166
VspI	ATTAAT	1 cut(s)	491
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	1 cut(s)	521
XspI	CTAG	3 cut(s)	117, 266, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.