Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003193

Physical Location & Seq

Genomic Coordinates Forward (+)

1127961 .. 1129119

Gene Structure 1159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG015700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTATCCGGCTGTTTTGGCTGGTTTGATTGGACTTGGAGGTCTGGAGGTGGCTTATGCAGATGCTGAGGAGGCTGCTTCCGTGCAGGGTTTGCCGGCTGATGCCTTGGGGAATAATGTGGAGGAAATTGCCAAGAAACAAAGACAGGAAATTGAAGACTTGCTCAAGAGTAAAGGGATCCAGCATGGTTCTTATCCCAACTTTAGTGTTTCTGTCAAGGGGCAAAAGTTAGCCATCAAGTTCCAAATTCCTCCTGCATGTGAAGCTTCACAAGTGATTGCAAATATTGCTTCTGATCTTGGCTTGAAAGTTGAAGCGCATGGTGGTGGTTCAGATATATCATTACGCGCTTGGGACAGTGGAGTTGCTTGGCAACTAATGCTTATGACACCCAGAGAAACAGAAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

AAA

Protein Analysis

137

Amino Acids

14.43

Weight (kDa)

4.83

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04180 AT4G04180
fragaria_vesca	FvH4_3g01380 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890
malus_domestica	MD10G1327000.v1.1 MD10G1327200.v1.1
prunus_persica	Prupe.4G014800_v2.0.a1 Prupe.4G015000_v2.0.a1 Prupe.4G015000_v2.0.a1
pyrus_communis	pycom10g27670
rosa_chinensis	RchiOBHm_Chr5g0002011 RchiOBHm_Chr5g0002051
rosa_laevigata	RLG00000025404 RLG00000030988 RLG00000030992
rosa_multiflora	Rmu_sc0000378.1_g000019 Rmu_sc0012328.1_g000001 Rmu_sc0017901.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074350 Rroxscaffold_6G00424700
rosa_rugosa	Rorug04G0394300
rosa_samantha	Rh3DG064500 Rh5AG015500 Rh5AG015700 Rh5AG015800 Rh5BG019100 Rh5CG016800 Rh5CG017100 Rh5DG017400
rosa_wichuraiana	Rw5G001520 Rw5G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	39
AccII	CGCG	1 cut(s)	348
AclWI	GGATC	2 cut(s)	172, 185
AcsI	RAATTY	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	155, 307, 314
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
AlwI	GGATC	2 cut(s)	172, 185
AlwNI	CAGNNNCTG	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	246
AspLEI	GCGC	2 cut(s)	319, 350
BamHI	GGATCC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	1 cut(s)	242
BciVI	GTATCC	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	179
BmsI	GCATC	2 cut(s)	52, 91
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	105
Bse118I	RCCGGY	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	8, 95
BslFI	GGGAC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	368
Bsp143I	GATC	2 cut(s)	177, 295
BspCNI	CTCAG	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	179
BspPI	GGATC	2 cut(s)	172, 185
BsrFI	RCCGGY	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	177, 295
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	359
BstAPI	GCANNNNNTGC	3 cut(s)	91, 287, 379
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	348
BstHHI	GCGC	2 cut(s)	319, 350
BstKTI	GATC	2 cut(s)	180, 298
BstMBI	GATC	2 cut(s)	177, 295
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 71, 91, 263, 287, 379
BstNSI	RCATGY	1 cut(s)	261
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	96
CaiI	CAGNNNCTG	1 cut(s)	65
CfoI	GCGC	2 cut(s)	319, 350
Cfr10I	RCCGGY	1 cut(s)	94
CviAII	CATG	3 cut(s)	185, 258, 320
CviJI	RGCY	8 cut(s)	11, 20, 53, 74, 98, 233, 266, 303
CviKI_1	RGCY	8 cut(s)	11, 20, 53, 74, 98, 233, 266, 303
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	179, 297
DpnII	GATC	2 cut(s)	177, 295
DrdI	GACNNNNNNGTC	1 cut(s)	39
DseDI	GACNNNNNNGTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	3 cut(s)	188, 261, 323
FaiI	YATR	6 cut(s)	57, 186, 259, 321, 338, 386
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	3 cut(s)	184, 257, 319
Fnu4HI	GCNGC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	75
GlaI	GCGC	2 cut(s)	318, 349
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	65
HapII	CCGG	2 cut(s)	8, 95
HhaI	GCGC	2 cut(s)	319, 350
Hin1II	CATG	3 cut(s)	188, 261, 323
Hin6I	GCGC	2 cut(s)	317, 348
HinP1I	GCGC	2 cut(s)	317, 348
HindIII	AAGCTT	1 cut(s)	264
HpaII	CCGG	2 cut(s)	8, 95
Hpy188I	TCNGA	2 cut(s)	295, 334
Hpy188III	TCNNGA	2 cut(s)	44, 166
HpyAV	CCTTC	1 cut(s)	398
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	4 cut(s)	59, 85, 257, 281
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 71, 91, 263, 287, 379
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	188, 261, 323
HspAI	GCGC	2 cut(s)	317, 348
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	177, 295
LpnPI	CCDG	9 cut(s)	6, 21, 29, 71, 108, 131, 194, 267, 406
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	52, 91
MalI	GATC	2 cut(s)	179, 297
MboI	GATC	2 cut(s)	177, 295
MboII	GAAGA	1 cut(s)	167
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	3 cut(s)	126, 150, 246
MnlI	CCTC	6 cut(s)	32, 40, 61, 64, 115, 261
MroNI	GCCGGC	1 cut(s)	94
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	2 cut(s)	8, 95
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	6 cut(s)	17, 71, 91, 263, 287, 379
NaeI	GCCGGC	1 cut(s)	96
NdeII	GATC	2 cut(s)	177, 295
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	3 cut(s)	188, 261, 323
NlaIV	GGNNCC	1 cut(s)	179
NspI	RCATGY	1 cut(s)	261
PdiI	GCCGGC	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	324
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	177, 295
SetI	ASST	3 cut(s)	43, 51, 268
SfaNI	GCATC	2 cut(s)	52, 91
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	3 cut(s)	126, 150, 246
SspI	AATATT	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	359
TasI	AATT	3 cut(s)	126, 150, 246
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	364
XapI	RAATTY	1 cut(s)	246
XceI	RCATGY	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.