Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017901.1

Orthogroup ID

OG0003193

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 3308

Gene Structure 3307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017901.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgggagcgagagtttatggagttgatgaacccaatatgagttctacaagcaaagatatttcatgggataatcttgctggatatgatctgcaaaagcgacagatagaagacacgatactactggctatgcttagtcctgaaacatatgatgaaattgcccatggaactcgtcgcaaatttgagtcaaacaaacctcgagctgtactcttcgaaggcccaccaggtacagggaaaacttcttctgctcgtgtcattgctaatcaagcggccgtcccaatgttatatgttccccttgaggttatcttgtccaagtactatggtgagagtgaacgattattagggaaggtgttttcacttgctaatgaactcccagatggtgctatcatttttctagatgaggttgattctttcgctattttgcgagatagtgatttgcatgaagccacacggagagttttgtcagttttgctgcgacagattgatggatttgaacaggataagaaagtggttgtaattgctgcaacaaataggaagcaagacctcaacccggccttgatcaggtatattgtcaattcaattatcccatttggcctacctgatcatcaaaatcgtaaggaaatagcagctcagtatgcaaagcatctaaccgaaactgaattagatgaattggcaacagtaacagaagagatgtctggaagggatatcagagatgtgtgtcaacaagcagagaggtcgtgggcatcaaagctgatccgaggaaaagtaccccaaagacggagaccaaacccgtcttccgcctctgcaggactacatagcgagtgccatgaatcgacgcaagggattcct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

AAA

Protein Analysis

282

Amino Acids

31.46

Weight (kDa)

5.77

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04180 AT4G04180
fragaria_vesca	FvH4_3g01380 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890
malus_domestica	MD10G1327000.v1.1 MD10G1327200.v1.1
prunus_persica	Prupe.4G014800_v2.0.a1 Prupe.4G015000_v2.0.a1 Prupe.4G015000_v2.0.a1
pyrus_communis	pycom10g27670
rosa_chinensis	RchiOBHm_Chr5g0002011 RchiOBHm_Chr5g0002051
rosa_laevigata	RLG00000025404 RLG00000030988 RLG00000030992
rosa_multiflora	Rmu_sc0000378.1_g000019 Rmu_sc0012328.1_g000001 Rmu_sc0017901.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074350 Rroxscaffold_6G00424700
rosa_rugosa	Rorug04G0394300
rosa_samantha	Rh3DG064500 Rh5AG015500 Rh5AG015700 Rh5AG015800 Rh5BG019100 Rh5CG016800 Rh5CG017100 Rh5DG017400
rosa_wichuraiana	Rw5G001520 Rw5G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	266, 795
AclWI	GGATC	1 cut(s)	745
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	4 cut(s)	204, 226, 314, 765
AfiI	CCNNNNNNNGG	4 cut(s)	227, 547, 558, 774
AgsI	TTSAA	2 cut(s)	491, 576
AjnI	CCWGG	1 cut(s)	220
AjuI	GAANNNNNNNTTGG	2 cut(s)	775, 807
AluBI	AGCT	3 cut(s)	200, 626, 748
AluI	AGCT	3 cut(s)	200, 626, 748
Alw26I	GTCTC	1 cut(s)	772
AlwI	GGATC	1 cut(s)	745
Ama87I	CYCGRG	1 cut(s)	195
AoxI	GGCC	4 cut(s)	214, 267, 549, 589
ApeKI	GCWGC	3 cut(s)	469, 518, 623
ApoI	RAATTY	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	332
AsuII	TTCGAA	1 cut(s)	210
AvaI	CYCGRG	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	99, 131
BauI	CACGAG	1 cut(s)	246
BbsI	GAAGAC	2 cut(s)	114, 783
BbvI	GCAGC	3 cut(s)	456, 505, 635
BccI	CCATC	2 cut(s)	368, 476
BceAI	ACGGC	1 cut(s)	254
BcgI	CGANNNNNNTGC	2 cut(s)	714, 748
BciT130I	CCWGG	1 cut(s)	222
BclI	TGATCA	2 cut(s)	555, 598
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	1 cut(s)	772
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	801
BisI	GCNGC	4 cut(s)	267, 470, 519, 624
BlsI	GCNGC	4 cut(s)	268, 471, 520, 625
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	2 cut(s)	222, 548
BmeT110I	CYCGRG	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	215
BmrFI	CCNGG	2 cut(s)	222, 548
BmsI	GCATC	2 cut(s)	649, 749
BpiI	GAAGAC	2 cut(s)	114, 783
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
Bpu14I	TTCGAA	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	548
BsaI	GGTCTC	1 cut(s)	772
BsaJI	CCNNGG	2 cut(s)	160, 754
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	4 cut(s)	227, 547, 558, 774
Bse1I	ACTGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	160, 754
BseLI	CCNNNNNNNGG	4 cut(s)	227, 547, 558, 774
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	1 cut(s)	126
BseX3I	CGGCCG	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	456, 505, 635
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	4 cut(s)	216, 269, 551, 591
BsiEI	CGRYCG	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	4 cut(s)	227, 547, 558, 774
BsmAI	GTCTC	1 cut(s)	772
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	4 cut(s)	216, 269, 551, 591
Bso31I	GGTCTC	1 cut(s)	772
BsoBI	CYCGRG	1 cut(s)	195
Bsp119I	TTCGAA	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	85, 555, 598, 750
Bsp19I	CCATGG	1 cut(s)	160
BspACI	CCGC	2 cut(s)	266, 795
BspANI	GGCC	4 cut(s)	216, 269, 551, 591
BspCNI	CTCAG	1 cut(s)	640
BspMAI	CTGCAG	1 cut(s)	805
BspPI	GGATC	1 cut(s)	745
BspT104I	TTCGAA	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	772
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	160, 754
BssMI	GATC	4 cut(s)	85, 555, 598, 750
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	160
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	676
Bst6I	CTCTTC	2 cut(s)	212, 678
BstBI	TTCGAA	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	131, 627
BstDSI	CCRYGG	1 cut(s)	160
BstENI	CCTNNNNNAGG	1 cut(s)	556
BstKTI	GATC	4 cut(s)	88, 558, 601, 753
BstMAI	GTCTC	1 cut(s)	772
BstMBI	GATC	4 cut(s)	85, 555, 598, 750
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 632
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	2 cut(s)	220, 546
BstSFI	CTRYAG	1 cut(s)	801
BstV1I	GCAGC	3 cut(s)	456, 505, 635
BstV2I	GAAGAC	2 cut(s)	114, 783
BstZI	CGGCCG	1 cut(s)	267
BsuRI	GGCC	4 cut(s)	216, 269, 551, 591
BtgI	CCRYGG	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	215
CseI	GACGC	1 cut(s)	841
CsiI	ACCWGGT	1 cut(s)	220
Csp6I	GTAC	4 cut(s)	203, 225, 313, 764
CviAII	CATG	4 cut(s)	63, 161, 437, 824
CviJI	RGCY	9 cut(s)	125, 200, 216, 269, 443, 551, 591, 626, 748
CviKI_1	RGCY	9 cut(s)	125, 200, 216, 269, 443, 551, 591, 626, 748
CviQI	GTAC	4 cut(s)	203, 225, 313, 764
DdeI	CTNAG	2 cut(s)	131, 627
DpnI	GATC	4 cut(s)	87, 557, 600, 752
DpnII	GATC	4 cut(s)	85, 555, 598, 750
EaeI	YGGCCR	1 cut(s)	267
EagI	CGGCCG	1 cut(s)	267
Eam1104I	CTCTTC	2 cut(s)	212, 678
EarI	CTCTTC	2 cut(s)	212, 678
EciI	GGCGGA	1 cut(s)	784
EclXI	CGGCCG	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	772
Eco32I	GATATC	1 cut(s)	703
Eco52I	CGGCCG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	195
EcoNI	CCTNNNNNAGG	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	4 cut(s)	66, 164, 440, 827
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	4 cut(s)	62, 160, 436, 823
FauNDI	CATATG	1 cut(s)	145
FbaI	TGATCA	2 cut(s)	555, 598
Fnu4HI	GCNGC	4 cut(s)	267, 470, 519, 624
Fsp4HI	GCNGC	4 cut(s)	267, 470, 519, 624
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	4 cut(s)	267, 470, 519, 624
HaeIII	GGCC	4 cut(s)	216, 269, 551, 591
HapII	CCGG	1 cut(s)	548
HgaI	GACGC	1 cut(s)	841
Hin1II	CATG	4 cut(s)	66, 164, 440, 827
HincII	GTYRAC	1 cut(s)	719
HindII	GTYRAC	1 cut(s)	719
HinfI	GANTC	4 cut(s)	182, 404, 827, 841
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	329, 719
Hpy188I	TCNGA	2 cut(s)	707, 755
Hpy188III	TCNNGA	3 cut(s)	137, 392, 693
Hpy8I	GTNNAC	2 cut(s)	329, 719
Hpy99I	CGWCG	2 cut(s)	174, 835
HpyAV	CCTTC	3 cut(s)	206, 337, 690
HpyCH4III	ACNGT	1 cut(s)	676
HpyCH4V	TGCA	5 cut(s)	91, 436, 521, 635, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 632
HpyF3I	CTNAG	2 cut(s)	131, 627
Hsp92II	CATG	4 cut(s)	66, 164, 440, 827
Ksp22I	TGATCA	2 cut(s)	555, 598
Kzo9I	GATC	4 cut(s)	85, 555, 598, 750
LmnI	GCTCC	1 cut(s)	5
Lsp1109I	GCAGC	3 cut(s)	456, 505, 635
LweI	GCATC	2 cut(s)	649, 749
MabI	ACCWGGT	1 cut(s)	220
MaeI	CTAG	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	4 cut(s)	87, 557, 600, 752
MboI	GATC	4 cut(s)	85, 555, 598, 750
MboII	GAAGA	5 cut(s)	119, 199, 231, 695, 783
MluCI	AATT	7 cut(s)	153, 176, 513, 571, 576, 656, 665
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	7 cut(s)	204, 289, 391, 551, 723, 749, 808
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	2 cut(s)	222, 548
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	263, 632
NciI	CCSGG	1 cut(s)	548
NcoI	CCATGG	1 cut(s)	160
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	4 cut(s)	85, 555, 598, 750
NlaIII	CATG	4 cut(s)	66, 164, 440, 827
NspV	TTCGAA	1 cut(s)	210
PaeR7I	CTCGAG	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	404, 827, 841
PkrI	GCNGC	4 cut(s)	268, 471, 520, 625
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	215
PspXI	VCTCGAGB	1 cut(s)	195
PstI	CTGCAG	1 cut(s)	805
RsaI	GTAC	4 cut(s)	204, 226, 314, 765
RsaNI	GTAC	4 cut(s)	203, 225, 313, 764
SatI	GCNGC	4 cut(s)	267, 470, 519, 624
Sau3AI	GATC	4 cut(s)	85, 555, 598, 750
Sau96I	GGNCC	1 cut(s)	215
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	222, 548
SexAI	ACCWGGT	1 cut(s)	220
SfaNI	GCATC	2 cut(s)	649, 749
SfcI	CTRYAG	1 cut(s)	801
Sfr274I	CTCGAG	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	210
SlaI	CTCGAG	1 cut(s)	195
SmlI	CTYRAG	2 cut(s)	195, 293
SmoI	CTYRAG	2 cut(s)	195, 293
Sse9I	AATT	7 cut(s)	153, 176, 513, 571, 576, 656, 665
SsiI	CCGC	2 cut(s)	266, 795
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	2 cut(s)	220, 546
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	676
TaqI	TCGA	3 cut(s)	196, 210, 830
TasI	AATT	7 cut(s)	153, 176, 513, 571, 576, 656, 665
TatI	WGTACW	2 cut(s)	202, 312
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	3 cut(s)	404, 827, 841
TseI	GCWGC	3 cut(s)	469, 518, 623
TspDTI	ATGAA	7 cut(s)	42, 51, 165, 378, 453, 678, 840
TspGWI	ACGGA	2 cut(s)	463, 790
XagI	CCTNNNNNAGG	1 cut(s)	556
XapI	RAATTY	1 cut(s)	176
XbaI	TCTAGA	1 cut(s)	391
XhoI	CTCGAG	1 cut(s)	195
XspI	CTAG	1 cut(s)	392
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.