Rh5CG017100

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003193
Physical Location & Seq
Forward (+)
1127960 .. 1132497
4538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG017100.1

Sequence Viewer

Length: 1425 bp
ATGTATCCGGCTGTTTTGGCTGGTTTGATTGGACTTGGAGGTCTGGAGGTGGCTTATGCAGATGCTGAGGAGGCTGCTTCCGTGCAGGGTTTGCCGGCTGATGCCTTGGGGAATAATGTGGAGGAAATTGCCAAGAAACAAAGACAGGAAATTGAAGACTTGCTCAAGAGTAAAGGGATCCAGCATGGTTCTTATCCCAACTTTAGTGTTTCTGTCAAGGGGCAAAAGTTAGCCATCAAGTTCCAAATTCCTCCTGCATGTGAAGCTTCACAAGTGATTGCAAATATTGCTTCTGATCTTGGCTTGAAAGTTGAAGCGCATGGTGGTGGTTCAGATATATCATTACGCGCTTGGGACAGTGTCCTAAATTGGAGTTGCTTGGCAACTAATGCTTATGACACCCAGAGAAACAGAAGGAAACTGAAGTTGATCAAGGGTGATCGAGATCTGCACATCCTCGTTTTCCGTTCAGTCATTACCTCAACAGAAAAAGCTGAAATTGAATTTATGCAGCAGGGCAGCTTGAGTCCTGAAGAGCTTGATGCTCTGGTATCTGCTTTACAATTAGCTGGGACAAAAAAGAGCTTAATCCACAAGAAAAAATCTACTGCAGAGCGAAGAGTGAGGGAAGATAGCGCGCAGACTTCATCTATAGAGAAATTAATAACCAGTCTTGAGTCCATGGGAGTGAGAGTTTATGGAGTTGATGAACCCAATATGAGTTCTACAAGCAAAGATATTTCATGGGATAATCTTGCTGGATATGATCTGCAAAAGGGACAGATAGAAGACACGATACTACTGGCTTTGCTTAGTCCTGAAACATATGATGAAATTGCCCATGGAACTCGTCGCAAATTTGAGTCGAACAAACCTCGAGCTGTACTCTTCGAAGGCCCACCAGGTACAGGGAAAACTTCTTCTGCTCGTGTCATTGCTAATCAAGCGGCCGTCCCAATGTTATATGTTCCCCTTGAGGTTATCTTGTCCAAGTACTATGGTGAGAGTGAACGATTATTAGGGAAGGTGTTTTCACTTGCTAATGAACTCCCAGATGGTGCTATCATTTTTCTAGATGAGGTTGATTCTTTTGCTATTTCGCGAGATAGTGATTTGCATGAAGCCACATGGAGAGTTTTGTCAGTTTTGCTGCGACAGATTGATGGATTTGAACAGGATAAGAAAGTGGTTGTAATTGCTGCAACAAATAGGAAGCAAGACCTCGACCCGGCCTTGATCAGTCGGTTCGATTCAATTATCCCATTTGGCCTACCTGATCATCAAAATCGTAAGGAAATAGCAGCTGAGTATGCAAAGCATCTAACCGAAACTGAATTAGATGAATTGGCAACAGTAACAGAAGAGATGTCTGGAAGGGATATCAGAGATGTCAACAAGCAGCGAGGTCGTGGGCATCAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
AAA

Protein Analysis

474

Amino Acids

52.11

Weight (kDa)

5.42

Isoelectric Point (pI)

49.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 295 - 423 2.2e-34 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 39
AccII CGCG 3 cut(s) 348, 638, 1102
AciI CCGC 1 cut(s) 947
AclWI GGATC 2 cut(s) 172, 185
AcoI YGGCCR 1 cut(s) 948
AcsI RAATTY 3 cut(s) 246, 503, 857
AcuI CTGAAG 2 cut(s) 443, 552
AfaI GTAC 3 cut(s) 885, 907, 995
AfiI CCNNNNNNNGG 2 cut(s) 908, 1228
AgsI TTSAA 6 cut(s) 155, 307, 314, 503, 1172, 1254
AjnI CCWGG 1 cut(s) 901
AluBI AGCT 9 cut(s) 266, 494, 522, 538, 569, 585, 881, 1304, 1422
AluI AGCT 9 cut(s) 266, 494, 522, 538, 569, 585, 881, 1304, 1422
AlwI GGATC 2 cut(s) 172, 185
AlwNI CAGNNNCTG 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 876
AoxI GGCC 4 cut(s) 895, 948, 1230, 1267
ApeKI GCWGC 7 cut(s) 74, 511, 519, 1150, 1199, 1301, 1399
ApoI RAATTY 3 cut(s) 246, 503, 857
AseI ATTAAT 1 cut(s) 662
AspLEI GCGC 4 cut(s) 319, 350, 638, 640
AspS9I GGNCC 1 cut(s) 896
AsuC2I CCSGG 1 cut(s) 1229
AsuHPI GGTGA 2 cut(s) 449, 1013
AsuII TTCGAA 1 cut(s) 891
AvaI CYCGRG 1 cut(s) 876
BamHI GGATCC 1 cut(s) 177
BarI GAAGNNNNNNTAC 2 cut(s) 780, 812
BauI CACGAG 1 cut(s) 927
BbsI GAAGAC 2 cut(s) 162, 795
BbvCI CCTCAGC 1 cut(s) 66
BbvI GCAGC 7 cut(s) 61, 523, 531, 1137, 1186, 1313, 1411
BccI CCATC 3 cut(s) 242, 1049, 1157
BceAI ACGGC 1 cut(s) 935
BcgI CGANNNNNNTGC 2 cut(s) 1388, 1422
BciT130I CCWGG 1 cut(s) 903
BciVI GTATCC 1 cut(s) 15
BclI TGATCA 3 cut(s) 429, 1236, 1276
BcnI CCSGG 1 cut(s) 1229
BfaI CTAG 1 cut(s) 1073
BfmI CTRYAG 2 cut(s) 609, 651
BfuI GTATCC 1 cut(s) 15
BglII AGATCT 1 cut(s) 445
BisI GCNGC 8 cut(s) 75, 512, 520, 948, 1151, 1200, 1302, 1400
BlsI GCNGC 8 cut(s) 76, 513, 521, 949, 1152, 1201, 1303, 1401
BmcAI AGTACT 1 cut(s) 995
Bme1390I CCNGG 2 cut(s) 903, 1229
BmeT110I CYCGRG 1 cut(s) 876
BmgT120I GGNCC 1 cut(s) 896
BmiI GGNNCC 1 cut(s) 179
BmrFI CCNGG 2 cut(s) 903, 1229
BmsI GCATC 4 cut(s) 52, 91, 532, 1327
BpiI GAAGAC 2 cut(s) 162, 795
BplI GAGNNNNNCTC 2 cut(s) 870, 902
BpmI CTGGAG 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 66
Bpu14I TTCGAA 1 cut(s) 891
BpuEI CTTGAG 4 cut(s) 149, 544, 695, 995
BpuMI CCSGG 1 cut(s) 1229
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 3 cut(s) 105, 681, 841
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 2 cut(s) 908, 1228
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 669, 807
Bse3DI GCAATG 1 cut(s) 933
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 1 cut(s) 903
BseDI CCNNGG 3 cut(s) 105, 681, 841
BseGI GGATG 1 cut(s) 453
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 908, 1228
BseMI GCAATG 1 cut(s) 933
BseMII CTCAG 2 cut(s) 57, 1296
BseNI ACTGG 2 cut(s) 669, 807
BsePI GCGCGC 1 cut(s) 636
BseRI GAGGAG 1 cut(s) 83
BseX3I CGGCCG 1 cut(s) 948
BseXI GCAGC 7 cut(s) 61, 523, 531, 1137, 1186, 1313, 1411
BseYI CCCAGC 1 cut(s) 569
BsgI GTGCAG 2 cut(s) 104, 434
Bsh1236I CGCG 3 cut(s) 348, 638, 1102
Bsh1285I CGRYCG 1 cut(s) 951
BshFI GGCC 4 cut(s) 897, 950, 1232, 1269
BsiEI CGRYCG 1 cut(s) 951
BsiHKCI CYCGRG 1 cut(s) 876
BsiSI CCGG 3 cut(s) 8, 95, 1229
BslFI GGGAC 4 cut(s) 368, 586, 792, 938
BslI CCNNNNNNNGG 2 cut(s) 908, 1228
BsmFI GGGAC 4 cut(s) 368, 586, 792, 938
BsnI GGCC 4 cut(s) 897, 950, 1232, 1269
BsoBI CYCGRG 1 cut(s) 876
Bsp119I TTCGAA 1 cut(s) 891
Bsp143I GATC 8 cut(s) 177, 295, 429, 439, 445, 766, 1236, 1276
Bsp19I CCATGG 2 cut(s) 681, 841
Bsp68I TCGCGA 1 cut(s) 1102
BspACI CCGC 1 cut(s) 947
BspANI GGCC 4 cut(s) 897, 950, 1232, 1269
BspCNI CTCAG 2 cut(s) 58, 1297
BspFNI CGCG 3 cut(s) 348, 638, 1102
BspLI GGNNCC 1 cut(s) 179
BspMAI CTGCAG 1 cut(s) 613
BspPI GGATC 2 cut(s) 172, 185
BspQI GCTCTTC 1 cut(s) 528
BspT104I TTCGAA 1 cut(s) 891
BsrDI GCAATG 1 cut(s) 933
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 2 cut(s) 669, 807
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 3 cut(s) 105, 681, 841
BssHII GCGCGC 1 cut(s) 636
BssMI GATC 8 cut(s) 177, 295, 429, 439, 445, 766, 1236, 1276
BssSI CACGAG 1 cut(s) 927
BssT1I CCWWGG 3 cut(s) 105, 681, 841
Bst2BI CACGAG 1 cut(s) 927
Bst2UI CCWGG 1 cut(s) 903
Bst4CI ACNGT 2 cut(s) 359, 1354
Bst6I CTCTTC 4 cut(s) 528, 613, 893, 1356
BstAPI GCANNNNNTGC 3 cut(s) 91, 287, 389
BstBI TTCGAA 1 cut(s) 891
BstC8I GCNNGC 2 cut(s) 96, 638
BstDEI CTNAG 3 cut(s) 66, 812, 1305
BstDSI CCRYGG 2 cut(s) 681, 841
BstF5I GGATG 1 cut(s) 453
BstFNI CGCG 3 cut(s) 348, 638, 1102
BstHHI GCGC 4 cut(s) 319, 350, 638, 640
BstKTI GATC 8 cut(s) 180, 298, 432, 442, 448, 769, 1239, 1279
BstMBI GATC 8 cut(s) 177, 295, 429, 439, 445, 766, 1236, 1276
BstMCI CGRYCG 1 cut(s) 951
BstMWI GCNNNNNNNGC 8 cut(s) 17, 71, 91, 263, 287, 389, 944, 1310
BstNI CCWGG 1 cut(s) 903
BstNSI RCATGY 1 cut(s) 261
BstSCI CCNGG 2 cut(s) 901, 1227
BstSFI CTRYAG 2 cut(s) 609, 651
BstUI CGCG 3 cut(s) 348, 638, 1102
BstV1I GCAGC 7 cut(s) 61, 523, 531, 1137, 1186, 1313, 1411
BstV2I GAAGAC 2 cut(s) 162, 795
BstX2I RGATCY 2 cut(s) 177, 445
BstYI RGATCY 2 cut(s) 177, 445
BstZI CGGCCG 1 cut(s) 948
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 4 cut(s) 897, 950, 1232, 1269
BtgI CCRYGG 2 cut(s) 681, 841
BtsCI GGATG 1 cut(s) 453
BtsIMutI CAGTG 1 cut(s) 364
BtuMI TCGCGA 1 cut(s) 1102
Cac8I GCNNGC 2 cut(s) 96, 638
CaiI CAGNNNCTG 1 cut(s) 65
CfoI GCGC 4 cut(s) 319, 350, 638, 640
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 896
CsiI ACCWGGT 1 cut(s) 901
Csp6I GTAC 3 cut(s) 884, 906, 994
CviAII CATG 8 cut(s) 185, 258, 320, 682, 744, 842, 1118, 1128
CviQI GTAC 3 cut(s) 884, 906, 994
DdeI CTNAG 3 cut(s) 66, 812, 1305
DpnI GATC 8 cut(s) 179, 297, 431, 441, 447, 768, 1238, 1278
DpnII GATC 8 cut(s) 177, 295, 429, 439, 445, 766, 1236, 1276
DrdI GACNNNNNNGTC 1 cut(s) 39
DseDI GACNNNNNNGTC 1 cut(s) 39
EaeI YGGCCR 1 cut(s) 948
EagI CGGCCG 1 cut(s) 948
Eam1104I CTCTTC 4 cut(s) 528, 613, 893, 1356
EarI CTCTTC 4 cut(s) 528, 613, 893, 1356
EclXI CGGCCG 1 cut(s) 948
Eco130I CCWWGG 3 cut(s) 105, 681, 841
Eco32I GATATC 1 cut(s) 1381
Eco52I CGGCCG 1 cut(s) 948
Eco57I CTGAAG 2 cut(s) 443, 552
Eco88I CYCGRG 1 cut(s) 876
EcoRII CCWGG 1 cut(s) 901
EcoRV GATATC 1 cut(s) 1381
EcoT14I CCWWGG 3 cut(s) 105, 681, 841
ErhI CCWWGG 3 cut(s) 105, 681, 841
FaeI CATG 8 cut(s) 188, 261, 323, 685, 747, 845, 1121, 1131
FaqI GGGAC 4 cut(s) 368, 586, 792, 938
FatI CATG 8 cut(s) 184, 257, 319, 681, 743, 841, 1117, 1127
FauNDI CATATG 1 cut(s) 826
FbaI TGATCA 3 cut(s) 429, 1236, 1276
Fnu4HI GCNGC 8 cut(s) 75, 512, 520, 948, 1151, 1200, 1302, 1400
FokI GGATG 1 cut(s) 440
Fsp4HI GCNGC 8 cut(s) 75, 512, 520, 948, 1151, 1200, 1302, 1400
FspBI CTAG 1 cut(s) 1073
GlaI GCGC 4 cut(s) 318, 349, 637, 639
GluI GCNGC 8 cut(s) 75, 512, 520, 948, 1151, 1200, 1302, 1400
GsaI CCCAGC 1 cut(s) 573
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 4 cut(s) 897, 950, 1232, 1269
HapII CCGG 3 cut(s) 8, 95, 1229
HhaI GCGC 4 cut(s) 319, 350, 638, 640
Hin1II CATG 8 cut(s) 188, 261, 323, 685, 747, 845, 1121, 1131
Hin6I GCGC 4 cut(s) 317, 348, 636, 638
HinP1I GCGC 4 cut(s) 317, 348, 636, 638
HincII GTYRAC 1 cut(s) 1393
HindII GTYRAC 1 cut(s) 1393
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 5 cut(s) 526, 677, 863, 1085, 1250
HpaII CCGG 3 cut(s) 8, 95, 1229
HphI GGTGA 2 cut(s) 449, 1013
Hpy166II GTNNAC 2 cut(s) 1010, 1393
Hpy188I TCNGA 3 cut(s) 295, 334, 1385
Hpy188III TCNNGA 9 cut(s) 44, 166, 443, 530, 674, 818, 1073, 1101, 1371
Hpy8I GTNNAC 2 cut(s) 1010, 1393
Hpy99I CGWCG 1 cut(s) 855
HpyAV CCTTC 4 cut(s) 408, 887, 1018, 1368
HpyCH4III ACNGT 2 cut(s) 359, 1354
HpyF10VI GCNNNNNNNGC 8 cut(s) 17, 71, 91, 263, 287, 389, 944, 1310
HpyF3I CTNAG 3 cut(s) 66, 812, 1305
Hsp92II CATG 8 cut(s) 188, 261, 323, 685, 747, 845, 1121, 1131
HspAI GCGC 4 cut(s) 317, 348, 636, 638
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
Ksp22I TGATCA 3 cut(s) 429, 1236, 1276
Kzo9I GATC 8 cut(s) 177, 295, 429, 439, 445, 766, 1236, 1276
LguI GCTCTTC 1 cut(s) 528
Lsp1109I GCAGC 7 cut(s) 61, 523, 531, 1137, 1186, 1313, 1411
LweI GCATC 4 cut(s) 52, 91, 532, 1327
MabI ACCWGGT 1 cut(s) 901
MaeI CTAG 1 cut(s) 1073
MaeIII GTNAC 1 cut(s) 1354
MalI GATC 8 cut(s) 179, 297, 431, 441, 447, 768, 1238, 1278
MboI GATC 8 cut(s) 177, 295, 429, 439, 445, 766, 1236, 1276
MboII GAAGA 8 cut(s) 167, 545, 630, 641, 800, 880, 912, 1373
MflI RGATCY 2 cut(s) 177, 445
MlyI GAGTC 3 cut(s) 535, 686, 872
MroNI GCCGGC 1 cut(s) 94
MseI TTAA 2 cut(s) 587, 662
MslI CAYNNNNRTG 2 cut(s) 324, 686
MspA1I CMGCKG 1 cut(s) 1304
MspI CCGG 3 cut(s) 8, 95, 1229
MspR9I CCNGG 2 cut(s) 903, 1229
MvaI CCWGG 1 cut(s) 903
MvnI CGCG 3 cut(s) 348, 638, 1102
MwoI GCNNNNNNNGC 8 cut(s) 17, 71, 91, 263, 287, 389, 944, 1310
NaeI GCCGGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 1229
NcoI CCATGG 2 cut(s) 681, 841
NdeI CATATG 1 cut(s) 826
NdeII GATC 8 cut(s) 177, 295, 429, 439, 445, 766, 1236, 1276
NgoMIV GCCGGC 1 cut(s) 94
NlaIII CATG 8 cut(s) 188, 261, 323, 685, 747, 845, 1121, 1131
NlaIV GGNNCC 1 cut(s) 179
NruI TCGCGA 1 cut(s) 1102
NspI RCATGY 1 cut(s) 261
NspV TTCGAA 1 cut(s) 891
PaeR7I CTCGAG 1 cut(s) 876
PauI GCGCGC 1 cut(s) 636
PciSI GCTCTTC 1 cut(s) 528
PdiI GCCGGC 1 cut(s) 96
PfeI GAWTC 2 cut(s) 1085, 1250
PflFI GACNNNGTC 1 cut(s) 359
PkrI GCNGC 8 cut(s) 76, 513, 521, 949, 1152, 1201, 1303, 1401
PleI GAGTC 3 cut(s) 534, 685, 871
PpsI GAGTC 3 cut(s) 534, 685, 871
PshBI ATTAAT 1 cut(s) 662
Psp6I CCWGG 1 cut(s) 901
PspFI CCCAGC 1 cut(s) 569
PspGI CCWGG 1 cut(s) 901
PspN4I GGNNCC 1 cut(s) 179
PspPI GGNCC 1 cut(s) 896
PspXI VCTCGAGB 1 cut(s) 876
PstI CTGCAG 1 cut(s) 613
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 2 cut(s) 177, 445
PsyI GACNNNGTC 1 cut(s) 359
PteI GCGCGC 1 cut(s) 636
PvuII CAGCTG 1 cut(s) 1304
RruI TCGCGA 1 cut(s) 1102
RsaI GTAC 3 cut(s) 885, 907, 995
RsaNI GTAC 3 cut(s) 884, 906, 994
RseI CAYNNNNRTG 2 cut(s) 324, 686
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 2 cut(s) 587, 662
SatI GCNGC 8 cut(s) 75, 512, 520, 948, 1151, 1200, 1302, 1400
Sau3AI GATC 8 cut(s) 177, 295, 429, 439, 445, 766, 1236, 1276
Sau96I GGNCC 1 cut(s) 896
ScaI AGTACT 1 cut(s) 995
SchI GAGTC 3 cut(s) 535, 686, 872
ScrFI CCNGG 2 cut(s) 903, 1229
SexAI ACCWGGT 1 cut(s) 901
SfaNI GCATC 4 cut(s) 52, 91, 532, 1327
SfcI CTRYAG 2 cut(s) 609, 651
Sfr274I CTCGAG 1 cut(s) 876
SfuI TTCGAA 1 cut(s) 891
SlaI CTCGAG 1 cut(s) 876
SmiMI CAYNNNNRTG 2 cut(s) 324, 686
SmlI CTYRAG 5 cut(s) 164, 523, 674, 876, 974
SmoI CTYRAG 5 cut(s) 164, 523, 674, 876, 974
SsiI CCGC 1 cut(s) 947
SspI AATATT 1 cut(s) 286
SspMI CTAG 1 cut(s) 1073
StyD4I CCNGG 2 cut(s) 901, 1227
StyI CCWWGG 3 cut(s) 105, 681, 841
TaaI ACNGT 2 cut(s) 359, 1354
TaqI TCGA 6 cut(s) 442, 866, 877, 891, 1224, 1248
TatI WGTACW 2 cut(s) 883, 993
TauI GCSGC 1 cut(s) 950
TfiI GAWTC 2 cut(s) 1085, 1250
Tru1I TTAA 2 cut(s) 587, 662
Tru9I TTAA 2 cut(s) 587, 662
TscAI CASTG 1 cut(s) 364
TseI GCWGC 7 cut(s) 74, 511, 519, 1150, 1199, 1301, 1399
TspDTI ATGAA 7 cut(s) 636, 723, 732, 846, 1059, 1134, 1356
TspGWI ACGGA 2 cut(s) 70, 455
TspRI CASTG 1 cut(s) 364
Tth111I GACNNNGTC 1 cut(s) 359
VspI ATTAAT 1 cut(s) 662
XapI RAATTY 3 cut(s) 246, 503, 857
XbaI TCTAGA 1 cut(s) 1072
XceI RCATGY 1 cut(s) 261
XhoI CTCGAG 1 cut(s) 876
XspI CTAG 1 cut(s) 1073
ZrmI AGTACT 1 cut(s) 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.