Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003193

Physical Location & Seq

Genomic Coordinates Forward (+)

45591821 .. 45592295

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025404

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAAAAATGCAGGGTGTTTTGAGCAACCATATCATTCCAATGCATCTGAAATTGAGGTGGTGAAAGCTGTGCCAAGCCGGGGCGGTGCCGCCAGCGGGCAGTATCTTATGTATCTAGCTGTTTTCGCTGGTTTGGTTGGACTTGGAGGTGTTGAGGTGGCTTATGCAGATGCTGAGGAGGCTGCTCCCAAGCAGGGTTTGCGGGCTGATACCCCTGTGAATAACGTGGAGGAAATTGCCAAGAAACAAAGACAGGAGATTGAAGACTTGCTTGAGAAAAGAGGGATCCGGCGTGGTTCTTATCCCAACTTTACTGTTTCTGTCAAGGGGCAAAAGGTTCGCGAAATGCTACAGCCTTACATGTCTGTTGGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

AAA

Protein Analysis

126

Amino Acids

13.58

Weight (kDa)

6.59

Isoelectric Point (pI)

64.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04180 AT4G04180
fragaria_vesca	FvH4_3g01380 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890
malus_domestica	MD10G1327000.v1.1 MD10G1327200.v1.1
prunus_persica	Prupe.4G014800_v2.0.a1 Prupe.4G015000_v2.0.a1 Prupe.4G015000_v2.0.a1
pyrus_communis	pycom10g27670
rosa_chinensis	RchiOBHm_Chr5g0002011 RchiOBHm_Chr5g0002051
rosa_laevigata	RLG00000025404 RLG00000030988 RLG00000030992
rosa_multiflora	Rmu_sc0000378.1_g000019 Rmu_sc0012328.1_g000001 Rmu_sc0017901.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074350 Rroxscaffold_6G00424700
rosa_rugosa	Rorug04G0394300
rosa_samantha	Rh3DG064500 Rh5AG015500 Rh5AG015700 Rh5AG015800 Rh5BG019100 Rh5CG016800 Rh5CG017100 Rh5DG017400
rosa_wichuraiana	Rw5G001520 Rw5G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccII	CGCG	1 cut(s)	342
AciI	CCGC	4 cut(s)	84, 90, 96, 202
AclWI	GGATC	2 cut(s)	280, 293
AfiI	CCNNNNNNNGG	3 cut(s)	80, 96, 194
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	1 cut(s)	263
AluBI	AGCT	2 cut(s)	68, 119
AluI	AGCT	2 cut(s)	68, 119
AlwI	GGATC	2 cut(s)	280, 293
AlwNI	CAGNNNCTG	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	73
BaeI	ACNNNNGTAYC	2 cut(s)	201, 234
BamHI	GGATCC	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	350
BisI	GCNGC	2 cut(s)	90, 183
BlsI	GCNGC	2 cut(s)	91, 184
Bme1390I	CCNGG	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	88, 287
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	2 cut(s)	53, 160
BpiI	GAAGAC	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 96, 194
BseDI	CCNNGG	1 cut(s)	79
BseLI	CCNNNNNNNGG	3 cut(s)	80, 96, 194
BseMII	CTCAG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	342
BshNI	GGYRCC	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	79, 289
BslI	CCNNNNNNNGG	3 cut(s)	80, 96, 194
Bsp143I	GATC	1 cut(s)	285
Bsp68I	TCGCGA	1 cut(s)	342
BspACI	CCGC	4 cut(s)	84, 90, 96, 202
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	88, 287
BspPI	GGATC	2 cut(s)	280, 293
BspT107I	GGYRCC	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	316
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	94, 98, 204
BstDEI	CTNAG	1 cut(s)	174
BstFNI	CGCG	1 cut(s)	342
BstKTI	GATC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 179, 199
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	350
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BtuMI	TCGCGA	1 cut(s)	342
Cac8I	GCNNGC	3 cut(s)	94, 98, 204
CaiI	CAGNNNCTG	1 cut(s)	173
CviAII	CATG	1 cut(s)	361
CviJI	RGCY	7 cut(s)	68, 78, 119, 161, 182, 206, 355
CviKI_1	RGCY	7 cut(s)	68, 78, 119, 161, 182, 206, 355
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	46
FaeI	CATG	1 cut(s)	364
FaiI	YATR	4 cut(s)	31, 110, 165, 362
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	1 cut(s)	360
FauI	CCCGC	2 cut(s)	89, 195
Fnu4HI	GCNGC	2 cut(s)	90, 183
Fsp4HI	GCNGC	2 cut(s)	90, 183
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	2 cut(s)	90, 183
HapII	CCGG	2 cut(s)	79, 289
Hin1II	CATG	1 cut(s)	364
HpaII	CCGG	2 cut(s)	79, 289
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	11, 44, 167
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 179, 199
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	364
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	7 cut(s)	92, 106, 114, 179, 228, 239, 302
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	2 cut(s)	53, 160
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	225
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	1 cut(s)	275
MflI	RGATCY	1 cut(s)	285
MluCI	AATT	2 cut(s)	51, 234
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	7 cut(s)	49, 140, 148, 169, 172, 223, 275
Mph1103I	ATGCAT	1 cut(s)	46
MslI	CAYNNNNRTG	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	2 cut(s)	79, 289
MspR9I	CCNGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	3 cut(s)	125, 179, 199
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	1 cut(s)	364
NlaIV	GGNNCC	2 cut(s)	88, 287
NruI	TCGCGA	1 cut(s)	342
NsiI	ATGCAT	1 cut(s)	46
NspI	RCATGY	1 cut(s)	364
PciI	ACATGT	1 cut(s)	360
PkrI	GCNGC	2 cut(s)	91, 184
PscI	ACATGT	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	88, 287
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	285
RruI	TCGCGA	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	39
SatI	GCNGC	2 cut(s)	90, 183
Sau3AI	GATC	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	7 cut(s)	60, 70, 121, 151, 159, 228, 339
SfaNI	GCATC	2 cut(s)	53, 160
SfcI	CTRYAG	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	51, 234
SsiI	CCGC	4 cut(s)	84, 90, 96, 202
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	1 cut(s)	228
TasI	AATT	2 cut(s)	51, 234
TauI	GCSGC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	364
XspI	CTAG	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.