Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003193

Physical Location & Seq

Genomic Coordinates Forward (+)

1129341 .. 1132498

Gene Structure 3158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG015800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCAGCAGGGCAGCTTGAGTCCTGAAGAGCTTGATGCTCTGGTATCTGCTTTACAATTAGCTGGGACAAAAAAGAGCTTAATCCACAAGAAAAAATCTACTGCAGAGCGAAGAGTGAGGGAAGATAGCGCGCAGACTTCATCTATAGAGAAATTAATAACCAGTCTTGAGTCCATGGGAGTGAGAGTTTATGGAGTTGATGAACCCAATATGAGTTCTACAAGCAAAGATATTTCATGGGATAATCTTGCTGGATATGATCTGCAAAAGGGACAGATAGAAGACACGATACTACTGGCTTTGCTTAGTCCTGAAACATATGATGAAATTGCCCATGGAACTCGTCGCAAATTTGAGTCGAACAAACCTCGAGCTGTACTCTTCGAAGGCCCACCAGGTACAGGGAAAACTTCTTCTGCTCGTGTCATTGCTAATCAAGCGGCCGTCCCAATGTTATATGTTCCCCTTGAGGTTATCTTGTCCAAGTACTATGGTGAGAGTGAACGATTATTAGGGAAGGTGTTTTCACTTGCTAATGAACTCCCAGATGGTGCTATCATTTTTCTAGATGAGGTTGATTCTTTTGCTATTTCGCGAGATAGTGATTTGCATGAAGCCACATGGAGAGTTTTGTCAGTTTTGCTGCGACAGATTGATGGATTTGAACAGGATAAGAAAGTGGTTGTAATTGCTGCAACAAATAGGAAGCAAGACCTCGACCCGGCCTTGATCAGTCGGTTCGATTCAATTATCCCATTTGGCCTACCTGATCATCAAAATCGTAAGGAAATAGCAGCTGAGTATGCAAAGCATCTAACCGAAACTGAATTAGATGAATTGGCAACAGTAACAGAAGAGATGTCTGGAAGGGATATCAGAGATGTCAACAAGCAGCGAGGTCGTGGGCATCAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

AAA

Protein Analysis

305

Amino Acids

33.87

Weight (kDa)

5.24

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	126 - 254	9e-35	ATPase family associated with various cellular activities (AAA)
AAA_5	PF07728	126 - 247	5.3e-06	AAA domain (dynein-related subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04180 AT4G04180
fragaria_vesca	FvH4_3g01380 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890
malus_domestica	MD10G1327000.v1.1 MD10G1327200.v1.1
prunus_persica	Prupe.4G014800_v2.0.a1 Prupe.4G015000_v2.0.a1 Prupe.4G015000_v2.0.a1
pyrus_communis	pycom10g27670
rosa_chinensis	RchiOBHm_Chr5g0002011 RchiOBHm_Chr5g0002051
rosa_laevigata	RLG00000025404 RLG00000030988 RLG00000030992
rosa_multiflora	Rmu_sc0000378.1_g000019 Rmu_sc0012328.1_g000001 Rmu_sc0017901.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074350 Rroxscaffold_6G00424700
rosa_rugosa	Rorug04G0394300
rosa_samantha	Rh3DG064500 Rh5AG015500 Rh5AG015700 Rh5AG015800 Rh5BG019100 Rh5CG016800 Rh5CG017100 Rh5DG017400
rosa_wichuraiana	Rw5G001520 Rw5G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	131, 595
AciI	CCGC	1 cut(s)	440
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	3 cut(s)	378, 400, 488
AfiI	CCNNNNNNNGG	2 cut(s)	401, 721
AgsI	TTSAA	2 cut(s)	665, 747
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	7 cut(s)	15, 31, 62, 78, 374, 797, 915
AluI	AGCT	7 cut(s)	15, 31, 62, 78, 374, 797, 915
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	4 cut(s)	388, 441, 723, 760
ApeKI	GCWGC	6 cut(s)	4, 12, 643, 692, 794, 892
ApoI	RAATTY	1 cut(s)	350
AseI	ATTAAT	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	131, 133
AspS9I	GGNCC	1 cut(s)	389
AsuC2I	CCSGG	1 cut(s)	722
AsuHPI	GGTGA	1 cut(s)	506
AsuII	TTCGAA	1 cut(s)	384
AvaI	CYCGRG	1 cut(s)	369
BarI	GAAGNNNNNNTAC	2 cut(s)	273, 305
BauI	CACGAG	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	6 cut(s)	16, 24, 630, 679, 806, 904
BccI	CCATC	2 cut(s)	542, 650
BceAI	ACGGC	1 cut(s)	428
BcgI	CGANNNNNNTGC	2 cut(s)	881, 915
BciT130I	CCWGG	1 cut(s)	396
BclI	TGATCA	2 cut(s)	729, 769
BcnI	CCSGG	1 cut(s)	722
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	2 cut(s)	102, 144
BisI	GCNGC	7 cut(s)	5, 13, 441, 644, 693, 795, 893
BlsI	GCNGC	7 cut(s)	6, 14, 442, 645, 694, 796, 894
BmcAI	AGTACT	1 cut(s)	488
Bme1390I	CCNGG	2 cut(s)	396, 722
BmeT110I	CYCGRG	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	389
BmrFI	CCNGG	2 cut(s)	396, 722
BmsI	GCATC	2 cut(s)	25, 820
BpiI	GAAGAC	1 cut(s)	288
BplI	GAGNNNNNCTC	2 cut(s)	363, 395
Bpu14I	TTCGAA	1 cut(s)	384
BpuEI	CTTGAG	3 cut(s)	37, 188, 488
BpuMI	CCSGG	1 cut(s)	722
BsaJI	CCNNGG	2 cut(s)	174, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 721
Bse1I	ACTGG	2 cut(s)	162, 300
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	174, 334
BseLI	CCNNNNNNNGG	2 cut(s)	401, 721
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	789
BseNI	ACTGG	2 cut(s)	162, 300
BsePI	GCGCGC	1 cut(s)	129
BseX3I	CGGCCG	1 cut(s)	441
BseXI	GCAGC	6 cut(s)	16, 24, 630, 679, 806, 904
BseYI	CCCAGC	1 cut(s)	62
Bsh1236I	CGCG	2 cut(s)	131, 595
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	4 cut(s)	390, 443, 725, 762
BsiEI	CGRYCG	1 cut(s)	444
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	722
BslFI	GGGAC	3 cut(s)	79, 285, 431
BslI	CCNNNNNNNGG	2 cut(s)	401, 721
BsmFI	GGGAC	3 cut(s)	79, 285, 431
BsnI	GGCC	4 cut(s)	390, 443, 725, 762
BsoBI	CYCGRG	1 cut(s)	369
Bsp119I	TTCGAA	1 cut(s)	384
Bsp143I	GATC	3 cut(s)	259, 729, 769
Bsp19I	CCATGG	2 cut(s)	174, 334
Bsp68I	TCGCGA	1 cut(s)	595
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	4 cut(s)	390, 443, 725, 762
BspCNI	CTCAG	1 cut(s)	790
BspFNI	CGCG	2 cut(s)	131, 595
BspMAI	CTGCAG	1 cut(s)	106
BspQI	GCTCTTC	1 cut(s)	21
BspT104I	TTCGAA	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	162, 300
BssECI	CCNNGG	2 cut(s)	174, 334
BssHII	GCGCGC	1 cut(s)	129
BssMI	GATC	3 cut(s)	259, 729, 769
BssSI	CACGAG	1 cut(s)	420
BssT1I	CCWWGG	2 cut(s)	174, 334
Bst2BI	CACGAG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	847
Bst6I	CTCTTC	4 cut(s)	21, 106, 386, 849
BstBI	TTCGAA	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	2 cut(s)	305, 798
BstDSI	CCRYGG	2 cut(s)	174, 334
BstFNI	CGCG	2 cut(s)	131, 595
BstHHI	GCGC	2 cut(s)	131, 133
BstKTI	GATC	3 cut(s)	262, 732, 772
BstMBI	GATC	3 cut(s)	259, 729, 769
BstMCI	CGRYCG	1 cut(s)	444
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 803
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	394, 720
BstSFI	CTRYAG	2 cut(s)	102, 144
BstUI	CGCG	2 cut(s)	131, 595
BstV1I	GCAGC	6 cut(s)	16, 24, 630, 679, 806, 904
BstV2I	GAAGAC	1 cut(s)	288
BstZI	CGGCCG	1 cut(s)	441
BsuRI	GGCC	4 cut(s)	390, 443, 725, 762
BtgI	CCRYGG	2 cut(s)	174, 334
BtuMI	TCGCGA	1 cut(s)	595
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	2 cut(s)	131, 133
Cfr13I	GGNCC	1 cut(s)	389
CsiI	ACCWGGT	1 cut(s)	394
Csp6I	GTAC	3 cut(s)	377, 399, 487
CviAII	CATG	5 cut(s)	175, 237, 335, 611, 621
CviQI	GTAC	3 cut(s)	377, 399, 487
DdeI	CTNAG	2 cut(s)	305, 798
DpnI	GATC	3 cut(s)	261, 731, 771
DpnII	GATC	3 cut(s)	259, 729, 769
EaeI	YGGCCR	1 cut(s)	441
EagI	CGGCCG	1 cut(s)	441
Eam1104I	CTCTTC	4 cut(s)	21, 106, 386, 849
EarI	CTCTTC	4 cut(s)	21, 106, 386, 849
EclXI	CGGCCG	1 cut(s)	441
Eco130I	CCWWGG	2 cut(s)	174, 334
Eco32I	GATATC	1 cut(s)	874
Eco52I	CGGCCG	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	394
EcoRV	GATATC	1 cut(s)	874
EcoT14I	CCWWGG	2 cut(s)	174, 334
ErhI	CCWWGG	2 cut(s)	174, 334
FaeI	CATG	5 cut(s)	178, 240, 338, 614, 624
FaqI	GGGAC	3 cut(s)	79, 285, 431
FatI	CATG	5 cut(s)	174, 236, 334, 610, 620
FauNDI	CATATG	1 cut(s)	319
FbaI	TGATCA	2 cut(s)	729, 769
Fnu4HI	GCNGC	7 cut(s)	5, 13, 441, 644, 693, 795, 893
Fsp4HI	GCNGC	7 cut(s)	5, 13, 441, 644, 693, 795, 893
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	2 cut(s)	130, 132
GluI	GCNGC	7 cut(s)	5, 13, 441, 644, 693, 795, 893
GsaI	CCCAGC	1 cut(s)	66
HaeIII	GGCC	4 cut(s)	390, 443, 725, 762
HapII	CCGG	1 cut(s)	722
HhaI	GCGC	2 cut(s)	131, 133
Hin1II	CATG	5 cut(s)	178, 240, 338, 614, 624
Hin6I	GCGC	2 cut(s)	129, 131
HinP1I	GCGC	2 cut(s)	129, 131
HincII	GTYRAC	1 cut(s)	886
HindII	GTYRAC	1 cut(s)	886
HinfI	GANTC	5 cut(s)	19, 170, 356, 578, 743
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	2 cut(s)	503, 886
Hpy188I	TCNGA	1 cut(s)	878
Hpy188III	TCNNGA	6 cut(s)	23, 167, 311, 566, 594, 864
Hpy8I	GTNNAC	2 cut(s)	503, 886
Hpy99I	CGWCG	1 cut(s)	348
HpyAV	CCTTC	3 cut(s)	380, 511, 861
HpyCH4III	ACNGT	1 cut(s)	847
HpyCH4V	TGCA	6 cut(s)	4, 104, 265, 610, 695, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 803
HpyF3I	CTNAG	2 cut(s)	305, 798
Hsp92II	CATG	5 cut(s)	178, 240, 338, 614, 624
HspAI	GCGC	2 cut(s)	129, 131
Ksp22I	TGATCA	2 cut(s)	729, 769
Kzo9I	GATC	3 cut(s)	259, 729, 769
LguI	GCTCTTC	1 cut(s)	21
Lsp1109I	GCAGC	6 cut(s)	16, 24, 630, 679, 806, 904
LweI	GCATC	2 cut(s)	25, 820
MabI	ACCWGGT	1 cut(s)	394
MaeI	CTAG	1 cut(s)	566
MaeIII	GTNAC	1 cut(s)	847
MalI	GATC	3 cut(s)	261, 731, 771
MboI	GATC	3 cut(s)	259, 729, 769
MboII	GAAGA	7 cut(s)	38, 123, 134, 293, 373, 405, 866
MluCI	AATT	8 cut(s)	56, 152, 327, 350, 687, 747, 827, 836
MlyI	GAGTC	3 cut(s)	28, 179, 365
MnlI	CCTC	6 cut(s)	111, 378, 463, 565, 725, 890
MseI	TTAA	2 cut(s)	80, 155
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	2 cut(s)	396, 722
MvaI	CCWGG	1 cut(s)	396
MvnI	CGCG	2 cut(s)	131, 595
MwoI	GCNNNNNNNGC	2 cut(s)	437, 803
NciI	CCSGG	1 cut(s)	722
NcoI	CCATGG	2 cut(s)	174, 334
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	3 cut(s)	259, 729, 769
NlaIII	CATG	5 cut(s)	178, 240, 338, 614, 624
NruI	TCGCGA	1 cut(s)	595
NspV	TTCGAA	1 cut(s)	384
PaeR7I	CTCGAG	1 cut(s)	369
PauI	GCGCGC	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	578, 743
PkrI	GCNGC	7 cut(s)	6, 14, 442, 645, 694, 796, 894
PleI	GAGTC	3 cut(s)	27, 178, 364
PpsI	GAGTC	3 cut(s)	27, 178, 364
PshBI	ATTAAT	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	389
PspXI	VCTCGAGB	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	106
PteI	GCGCGC	1 cut(s)	129
PvuII	CAGCTG	1 cut(s)	797
RruI	TCGCGA	1 cut(s)	595
RsaI	GTAC	3 cut(s)	378, 400, 488
RsaNI	GTAC	3 cut(s)	377, 399, 487
RseI	CAYNNNNRTG	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	80, 155
SatI	GCNGC	7 cut(s)	5, 13, 441, 644, 693, 795, 893
Sau3AI	GATC	3 cut(s)	259, 729, 769
Sau96I	GGNCC	1 cut(s)	389
ScaI	AGTACT	1 cut(s)	488
SchI	GAGTC	3 cut(s)	28, 179, 365
ScrFI	CCNGG	2 cut(s)	396, 722
SexAI	ACCWGGT	1 cut(s)	394
SfaNI	GCATC	2 cut(s)	25, 820
SfcI	CTRYAG	2 cut(s)	102, 144
Sfr274I	CTCGAG	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	384
SlaI	CTCGAG	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	4 cut(s)	16, 167, 369, 467
SmoI	CTYRAG	4 cut(s)	16, 167, 369, 467
Sse9I	AATT	8 cut(s)	56, 152, 327, 350, 687, 747, 827, 836
SsiI	CCGC	1 cut(s)	440
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	2 cut(s)	394, 720
StyI	CCWWGG	2 cut(s)	174, 334
TaaI	ACNGT	1 cut(s)	847
TaqI	TCGA	5 cut(s)	359, 370, 384, 717, 741
TasI	AATT	8 cut(s)	56, 152, 327, 350, 687, 747, 827, 836
TatI	WGTACW	2 cut(s)	376, 486
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	2 cut(s)	578, 743
Tru1I	TTAA	2 cut(s)	80, 155
Tru9I	TTAA	2 cut(s)	80, 155
TseI	GCWGC	6 cut(s)	4, 12, 643, 692, 794, 892
TspDTI	ATGAA	7 cut(s)	129, 216, 225, 339, 552, 627, 849
VspI	ATTAAT	1 cut(s)	155
XapI	RAATTY	1 cut(s)	350
XbaI	TCTAGA	1 cut(s)	565
XhoI	CTCGAG	1 cut(s)	369
XspI	CTAG	1 cut(s)	566
ZrmI	AGTACT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.