Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003193

Physical Location & Seq

Genomic Coordinates Reverse (-)

4272933 .. 4275039

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG064500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTATCCAGCTGTTTTGGCTGGTTTGGTTGGACTTGGAGGTTTTGAGGTGGCTTATGCAGATGCTGAGGAGGCTGCTCCCAAGCATGGTTTGCCGGCTGATGCCCCTGTGAATAACGTGGAGGAAATTGCCAAGAAACAAAGACAGGAGATTGAAGACTTGCTTGAGAAAAGAGGGATCCAGCGTGGTTCTTATCCCAACGTTACTGTTTCTGTCAAGGGGCAAAAGGTAACCATCAAGTTCCGAATTTCTCCTGCATGTGAAACTTCACAATTGATTGCAAATATTGCTTTTAATCTTGGCTTAAAAGTTGAAGGGCATGGTGGTGGTTCAAATATATCATTACGCGCTTGGGACAGTGGAGTTGATTGGCAACTAATACTTATGCACCCAGAGAAACAGAACGAAACCAAAGGTGATCAAGGGGAATTAAAAGATGTGAATGAACATGATCGAGATCTGCGCATCCTCTTTTTCCGTTCATTCATAACCTCAACAGAAAAAGCTGAAATTAAATTTATGAAGCAGGGCAGCTTGAGTCCCAAAGAGCTTGATGCTCTGGTATCTGCTTTACAATTATCTGGGGAAAAAATAGGGAAAAATTCTACCATAGAACGAAGATTGAGGGAAGATAGCACACAAACTTCATCTATAGAGAAATTAATAACCAGTCTTGAGTCCATGGGAGTGAGAGTTTATGGAGTTGATGAACCCAATGAGAGTTCTGCAAGCAAAGATATTTCATGGGATAATCTTGCTGGATATGATCTGCAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

AAA

Protein Analysis

259

Amino Acids

28.49

Weight (kDa)

5.31

Isoelectric Point (pI)

54.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04180 AT4G04180
fragaria_vesca	FvH4_3g01380 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890
malus_domestica	MD10G1327000.v1.1 MD10G1327200.v1.1
prunus_persica	Prupe.4G014800_v2.0.a1 Prupe.4G015000_v2.0.a1 Prupe.4G015000_v2.0.a1
pyrus_communis	pycom10g27670
rosa_chinensis	RchiOBHm_Chr5g0002011 RchiOBHm_Chr5g0002051
rosa_laevigata	RLG00000025404 RLG00000030988 RLG00000030992
rosa_multiflora	Rmu_sc0000378.1_g000019 Rmu_sc0012328.1_g000001 Rmu_sc0017901.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074350 Rroxscaffold_6G00424700
rosa_rugosa	Rorug04G0394300
rosa_samantha	Rh3DG064500 Rh5AG015500 Rh5AG015700 Rh5AG015800 Rh5BG019100 Rh5CG016800 Rh5CG017100 Rh5DG017400
rosa_wichuraiana	Rw5G001520 Rw5G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	464
AccII	CGCG	1 cut(s)	348
AclI	AACGTT	1 cut(s)	201
AclWI	GGATC	2 cut(s)	172, 185
AcsI	RAATTY	3 cut(s)	246, 515, 601
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	3 cut(s)	155, 314, 333
AluBI	AGCT	4 cut(s)	11, 506, 534, 550
AluI	AGCT	4 cut(s)	11, 506, 534, 550
AlwI	GGATC	2 cut(s)	172, 185
AlwNI	CAGNNNCTG	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	74, 531
ApoI	RAATTY	3 cut(s)	246, 515, 601
AseI	ATTAAT	1 cut(s)	662
AspLEI	GCGC	2 cut(s)	350, 465
AsuHPI	GGTGA	1 cut(s)	428
BamHI	GGATCC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	61, 543
BccI	CCATC	1 cut(s)	242
BciVI	GTATCC	1 cut(s)	15
BclI	TGATCA	1 cut(s)	418
BfmI	CTRYAG	1 cut(s)	651
BfuI	GTATCC	1 cut(s)	15
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	2 cut(s)	75, 532
BlsI	GCNGC	2 cut(s)	76, 533
BmiI	GGNNCC	1 cut(s)	179
BmsI	GCATC	4 cut(s)	52, 91, 474, 544
BpiI	GAAGAC	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	3 cut(s)	185, 556, 695
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	681
BsaXI	ACNNNNNCTCC	2 cut(s)	678, 708
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	669
Bse8I	GATNNNNATC	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	681
BseGI	GGATG	1 cut(s)	465
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	669
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	61, 543
Bsh1236I	CGCG	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	2 cut(s)	368, 525
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmFI	GGGAC	2 cut(s)	368, 525
Bsp143I	GATC	5 cut(s)	177, 418, 451, 457, 766
Bsp19I	CCATGG	1 cut(s)	681
BspCNI	CTCAG	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	179
BspPI	GGATC	2 cut(s)	172, 185
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	669
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	681
BssMI	GATC	5 cut(s)	177, 418, 451, 457, 766
BssT1I	CCWWGG	1 cut(s)	681
Bst4CI	ACNGT	2 cut(s)	208, 359
BstAPI	GCANNNNNTGC	2 cut(s)	91, 287
BstC8I	GCNNGC	2 cut(s)	96, 730
BstDEI	CTNAG	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	681
BstEII	GGTNACC	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	465
BstFNI	CGCG	1 cut(s)	348
BstHHI	GCGC	2 cut(s)	350, 465
BstKTI	GATC	5 cut(s)	180, 421, 454, 460, 769
BstMBI	GATC	5 cut(s)	177, 418, 451, 457, 766
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 71, 91, 287
BstNSI	RCATGY	1 cut(s)	261
BstPI	GGTNACC	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	651
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	61, 543
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	2 cut(s)	177, 457
BstYI	RGATCY	2 cut(s)	177, 457
BsuI	GTATCC	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	681
BtsCI	GGATG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	96, 730
CaiI	CAGNNNCTG	1 cut(s)	65
CfoI	GCGC	2 cut(s)	350, 465
Cfr10I	RCCGGY	1 cut(s)	94
CviAII	CATG	6 cut(s)	86, 258, 320, 449, 682, 744
CviJI	RGCY	9 cut(s)	11, 20, 53, 74, 98, 303, 506, 534, 550
CviKI_1	RGCY	9 cut(s)	11, 20, 53, 74, 98, 303, 506, 534, 550
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	5 cut(s)	179, 420, 453, 459, 768
DpnII	GATC	5 cut(s)	177, 418, 451, 457, 766
Eco130I	CCWWGG	1 cut(s)	681
Eco91I	GGTNACC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	681
FaeI	CATG	6 cut(s)	89, 261, 323, 452, 685, 747
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FaqI	GGGAC	2 cut(s)	368, 525
FatI	CATG	6 cut(s)	85, 257, 319, 448, 681, 743
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	75, 532
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	2 cut(s)	75, 532
FspI	TGCGCA	1 cut(s)	464
GlaI	GCGC	2 cut(s)	349, 464
GluI	GCNGC	2 cut(s)	75, 532
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	2 cut(s)	350, 465
Hin1II	CATG	6 cut(s)	89, 261, 323, 452, 685, 747
Hin6I	GCGC	2 cut(s)	348, 463
HinP1I	GCGC	2 cut(s)	348, 463
HinfI	GANTC	2 cut(s)	538, 677
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	428
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	2 cut(s)	455, 674
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	2 cut(s)	208, 359
HpyCH4IV	ACGT	2 cut(s)	117, 201
HpyCH4V	TGCA	6 cut(s)	59, 257, 281, 388, 728, 772
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 71, 91, 287
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	2 cut(s)	117, 201
Hsp92II	CATG	6 cut(s)	89, 261, 323, 452, 685, 747
HspAI	GCGC	2 cut(s)	348, 463
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	5 cut(s)	177, 418, 451, 457, 766
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	2 cut(s)	61, 543
LweI	GCATC	4 cut(s)	52, 91, 474, 544
MaeII	ACGT	2 cut(s)	117, 201
MaeIII	GTNAC	2 cut(s)	202, 229
MalI	GATC	5 cut(s)	179, 420, 453, 459, 768
MboI	GATC	5 cut(s)	177, 418, 451, 457, 766
MboII	GAAGA	3 cut(s)	167, 630, 641
MfeI	CAATTG	1 cut(s)	272
MflI	RGATCY	2 cut(s)	177, 457
MluCI	AATT	9 cut(s)	126, 246, 272, 428, 510, 515, 575, 601, 659
MlyI	GAGTC	2 cut(s)	547, 686
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	9 cut(s)	32, 40, 61, 64, 115, 167, 479, 502, 618
MroNI	GCCGGC	1 cut(s)	94
MseI	TTAA	5 cut(s)	294, 305, 431, 513, 662
MslI	CAYNNNNRTG	2 cut(s)	324, 686
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	95
MunI	CAATTG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	4 cut(s)	17, 71, 91, 287
NaeI	GCCGGC	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	681
NdeII	GATC	5 cut(s)	177, 418, 451, 457, 766
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	6 cut(s)	89, 261, 323, 452, 685, 747
NlaIV	GGNNCC	1 cut(s)	179
NsbI	TGCGCA	1 cut(s)	464
NspI	RCATGY	1 cut(s)	261
PdiI	GCCGGC	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	76, 533
PleI	GAGTC	2 cut(s)	546, 685
PpsI	GAGTC	2 cut(s)	546, 685
PshBI	ATTAAT	1 cut(s)	662
Psp1406I	AACGTT	1 cut(s)	201
PspEI	GGTNACC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	2 cut(s)	177, 457
PvuII	CAGCTG	1 cut(s)	11
RseI	CAYNNNNRTG	2 cut(s)	324, 686
SaqAI	TTAA	5 cut(s)	294, 305, 431, 513, 662
SatI	GCNGC	2 cut(s)	75, 532
Sau3AI	GATC	5 cut(s)	177, 418, 451, 457, 766
SchI	GAGTC	2 cut(s)	547, 686
SfaNI	GCATC	4 cut(s)	52, 91, 474, 544
SfcI	CTRYAG	1 cut(s)	651
SmiMI	CAYNNNNRTG	2 cut(s)	324, 686
SmlI	CTYRAG	3 cut(s)	164, 535, 674
SmoI	CTYRAG	3 cut(s)	164, 535, 674
Sse9I	AATT	9 cut(s)	126, 246, 272, 428, 510, 515, 575, 601, 659
SspI	AATATT	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	2 cut(s)	208, 359
TaiI	ACGT	2 cut(s)	120, 204
TaqI	TCGA	1 cut(s)	454
TasI	AATT	9 cut(s)	126, 246, 272, 428, 510, 515, 575, 601, 659
Tru1I	TTAA	5 cut(s)	294, 305, 431, 513, 662
Tru9I	TTAA	5 cut(s)	294, 305, 431, 513, 662
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	2 cut(s)	74, 531
TspDTI	ATGAA	7 cut(s)	459, 471, 475, 536, 636, 723, 732
TspGWI	ACGGA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	364
VspI	ATTAAT	1 cut(s)	662
XapI	RAATTY	3 cut(s)	246, 515, 601
XceI	RCATGY	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.