Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003193

Physical Location & Seq

Genomic Coordinates Forward (+)

45824131 .. 45832306

Gene Structure 8176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTGAAGGGGGAGTTTCTTTGGTCCGGTTTTGTTGAGGCCCTCAATTTGAGGGTTGTCCATGCCGAAATCATTCCTGGGGCGGTGCAGTGGCGGGGGTATCTTATGTATCCAGCTGTTTTGGCTGGTTTGGTTGGACTTCGAGGTTTTGAGGTGGCTTATGCAGGTGCTGAGGAGGGTTTGCCGGCTGATGCCCCTGCGAATAACGTGGACGAAATTGCCAAGAAACAAAGACAGGAGATTGAAGACTTGCTTGAGAAAAGAGGGATCCGGCGTGGTTCTAATCCCAACTTTACTGTTTCTGTCAAGGGGAAAAAGGTTCGCGAAATGCTACAGCCTTACATGTCTGTAACCATCAAGTTCCGAATTCCTCCTGCATGTGAAGCTTCACAATTGATTGCAAATATTGCTTTTAATCTTGGCTTAAAAGTTGAAGGGCATGGTCACCCATGGTGGTGGTTCAAATATATCATTACGCGCTTGGGACAGCAAGATGTGCTGAGCAGTGTTATCTATTGTGTGAACTATGTCAGTGGAGTTGCTTGGCAACTGATGCTTATGCACCCAGAGAAACAGAATGAAACCAAAGGTGATCAAGGGGAATTAAAAGATGTGAATGACCATGATCGAGATCTGCGCATCCTCGTTTTCCGTTCAGTCATAACCTCAACAGAAAAAGCTGAAATGAAAGGAATTACCAGTAGTGAGTATAGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

AAA

Protein Analysis

239

Amino Acids

26.98

Weight (kDa)

6.98

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04180 AT4G04180
fragaria_vesca	FvH4_3g01380 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890
malus_domestica	MD10G1327000.v1.1 MD10G1327200.v1.1
prunus_persica	Prupe.4G014800_v2.0.a1 Prupe.4G015000_v2.0.a1 Prupe.4G015000_v2.0.a1
pyrus_communis	pycom10g27670
rosa_chinensis	RchiOBHm_Chr5g0002011 RchiOBHm_Chr5g0002051
rosa_laevigata	RLG00000025404 RLG00000030988 RLG00000030992
rosa_multiflora	Rmu_sc0000378.1_g000019 Rmu_sc0012328.1_g000001 Rmu_sc0017901.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074350 Rroxscaffold_6G00424700
rosa_rugosa	Rorug04G0394300
rosa_samantha	Rh3DG064500 Rh5AG015500 Rh5AG015700 Rh5AG015800 Rh5BG019100 Rh5CG016800 Rh5CG017100 Rh5DG017400
rosa_wichuraiana	Rw5G001520 Rw5G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	155
Acc16I	TGCGCA	1 cut(s)	638
Acc36I	ACCTGC	1 cut(s)	155
AccII	CGCG	2 cut(s)	324, 478
AciI	CCGC	2 cut(s)	83, 94
AclWI	GGATC	2 cut(s)	262, 275
AcsI	RAATTY	1 cut(s)	366
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	3 cut(s)	245, 434, 463
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	3 cut(s)	116, 386, 680
AluI	AGCT	3 cut(s)	116, 386, 680
AlwI	GGATC	2 cut(s)	262, 275
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	39
ApoI	RAATTY	1 cut(s)	366
Asp700I	GAANNNNTTC	1 cut(s)	72
AspLEI	GCGC	2 cut(s)	480, 639
AspS9I	GGNCC	2 cut(s)	24, 40
AsuHPI	GGTGA	3 cut(s)	16, 437, 602
AvaII	GGWCC	1 cut(s)	24
BamHI	GGATCC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	171
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	78
BciVI	GTATCC	1 cut(s)	120
BclI	TGATCA	1 cut(s)	592
BfmI	CTRYAG	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	631
BlpI	GCTNAGC	1 cut(s)	500
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	24, 40
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	3 cut(s)	181, 543, 648
BpiI	GAAGAC	1 cut(s)	252
Bpu10I	CCTNAGC	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	630
BsaJI	CCNNGG	2 cut(s)	77, 449
BsaWI	WCCGGW	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	699
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	77, 449
BseGI	GGATG	1 cut(s)	639
BseJI	GATNNNNATC	1 cut(s)	630
BseMII	CTCAG	2 cut(s)	162, 491
BseNI	ACTGG	1 cut(s)	699
BseRI	GAGGAG	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	107
Bsh1236I	CGCG	2 cut(s)	324, 478
BshFI	GGCC	1 cut(s)	41
BsiSI	CCGG	3 cut(s)	27, 185, 271
BslFI	GGGAC	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	1 cut(s)	41
Bsp143I	GATC	4 cut(s)	267, 592, 625, 631
Bsp1720I	GCTNAGC	1 cut(s)	500
Bsp19I	CCATGG	1 cut(s)	449
Bsp68I	TCGCGA	1 cut(s)	324
BspACI	CCGC	2 cut(s)	83, 94
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	163, 492
BspFNI	CGCG	2 cut(s)	324, 478
BspLI	GGNNCC	1 cut(s)	269
BspMI	ACCTGC	1 cut(s)	155
BspPI	GGATC	2 cut(s)	262, 275
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	699
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	77, 449
BssMI	GATC	4 cut(s)	267, 592, 625, 631
BssT1I	CCWWGG	1 cut(s)	449
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	298
BstAPI	GCANNNNNTGC	3 cut(s)	407, 496, 553
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	171, 500
BstDSI	CCRYGG	1 cut(s)	449
BstEII	GGTNACC	1 cut(s)	443
BstF5I	GGATG	1 cut(s)	639
BstFNI	CGCG	2 cut(s)	324, 478
BstHHI	GCGC	2 cut(s)	480, 639
BstKTI	GATC	4 cut(s)	270, 595, 628, 634
BstMBI	GATC	4 cut(s)	267, 592, 625, 631
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 383, 407, 496, 553
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	2 cut(s)	346, 381
BstPI	GGTNACC	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	76
BstSFI	CTRYAG	1 cut(s)	332
BstUI	CGCG	2 cut(s)	324, 478
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	2 cut(s)	267, 631
BstXI	CCANNNNNNTGG	1 cut(s)	456
BstYI	RGATCY	2 cut(s)	267, 631
BsuI	GTATCC	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	449
BtsCI	GGATG	1 cut(s)	639
BtsI	GCAGTG	2 cut(s)	95, 511
BtsIMutI	CAGTG	3 cut(s)	95, 511, 538
BtuMI	TCGCGA	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	170
CfoI	GCGC	2 cut(s)	480, 639
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	24, 40
CviAII	CATG	6 cut(s)	62, 343, 378, 440, 450, 623
CviJI	RGCY	9 cut(s)	41, 116, 125, 158, 188, 337, 386, 423, 680
CviKI_1	RGCY	9 cut(s)	41, 116, 125, 158, 188, 337, 386, 423, 680
DdeI	CTNAG	2 cut(s)	171, 500
DpnI	GATC	4 cut(s)	269, 594, 627, 633
DpnII	GATC	4 cut(s)	267, 592, 625, 631
Eco130I	CCWWGG	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	24
Eco91I	GGTNACC	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	40
EcoO65I	GGTNACC	1 cut(s)	443
EcoRI	GAATTC	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	6 cut(s)	65, 346, 381, 443, 453, 626
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	6 cut(s)	61, 342, 377, 439, 449, 622
FauI	CCCGC	1 cut(s)	87
FbaI	TGATCA	1 cut(s)	592
FokI	GGATG	1 cut(s)	626
FspI	TGCGCA	1 cut(s)	638
GlaI	GCGC	2 cut(s)	479, 638
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	3 cut(s)	27, 185, 271
HhaI	GCGC	2 cut(s)	480, 639
Hin1II	CATG	6 cut(s)	65, 346, 381, 443, 453, 626
Hin6I	GCGC	2 cut(s)	478, 637
HinP1I	GCGC	2 cut(s)	478, 637
HindIII	AAGCTT	1 cut(s)	384
HpaII	CCGG	3 cut(s)	27, 185, 271
HphI	GGTGA	3 cut(s)	16, 437, 602
Hpy166II	GTNNAC	2 cut(s)	211, 523
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	2 cut(s)	323, 629
Hpy8I	GTNNAC	2 cut(s)	211, 523
HpyAV	CCTTC	1 cut(s)	428
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	5 cut(s)	88, 164, 377, 401, 562
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 383, 407, 496, 553
HpyF3I	CTNAG	2 cut(s)	171, 500
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	6 cut(s)	65, 346, 381, 443, 453, 626
HspAI	GCGC	2 cut(s)	478, 637
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	4 cut(s)	267, 592, 625, 631
LweI	GCATC	3 cut(s)	181, 543, 648
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	349, 443
MalI	GATC	4 cut(s)	269, 594, 627, 633
MboI	GATC	4 cut(s)	267, 592, 625, 631
MboII	GAAGA	1 cut(s)	257
MfeI	CAATTG	1 cut(s)	392
MflI	RGATCY	2 cut(s)	267, 631
MluCI	AATT	6 cut(s)	46, 216, 366, 392, 602, 693
MmeI	TCCRAC	1 cut(s)	115
MroNI	GCCGGC	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	3 cut(s)	414, 425, 605
MslI	CAYNNNNRTG	1 cut(s)	454
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	3 cut(s)	27, 185, 271
MspR9I	CCNGG	1 cut(s)	78
MunI	CAATTG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	2 cut(s)	324, 478
MwoI	GCNNNNNNNGC	5 cut(s)	122, 383, 407, 496, 553
NaeI	GCCGGC	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	449
NdeII	GATC	4 cut(s)	267, 592, 625, 631
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	6 cut(s)	65, 346, 381, 443, 453, 626
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	443
NruI	TCGCGA	1 cut(s)	324
NsbI	TGCGCA	1 cut(s)	638
NspI	RCATGY	2 cut(s)	346, 381
PaqCI	CACCTGC	1 cut(s)	155
PciI	ACATGT	1 cut(s)	342
PdiI	GCCGGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	72
PscI	ACATGT	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	76
PspEI	GGTNACC	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	2 cut(s)	24, 40
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	2 cut(s)	267, 631
PvuII	CAGCTG	1 cut(s)	116
RruI	TCGCGA	1 cut(s)	324
RseI	CAYNNNNRTG	1 cut(s)	454
SaqAI	TTAA	3 cut(s)	414, 425, 605
Sau3AI	GATC	4 cut(s)	267, 592, 625, 631
Sau96I	GGNCC	2 cut(s)	24, 40
ScrFI	CCNGG	1 cut(s)	78
SfaNI	GCATC	3 cut(s)	181, 543, 648
SfcI	CTRYAG	1 cut(s)	332
SinI	GGWCC	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	454
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	6 cut(s)	46, 216, 366, 392, 602, 693
SsiI	CCGC	2 cut(s)	83, 94
SspI	AATATT	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	2 cut(s)	142, 628
TasI	AATT	6 cut(s)	46, 216, 366, 392, 602, 693
Tru1I	TTAA	3 cut(s)	414, 425, 605
Tru9I	TTAA	3 cut(s)	414, 425, 605
TscAI	CASTG	3 cut(s)	95, 511, 538
TseFI	GTSAC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	2 cut(s)	594, 701
TspGWI	ACGGA	1 cut(s)	641
TspRI	CASTG	3 cut(s)	95, 511, 538
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	1 cut(s)	366
XceI	RCATGY	2 cut(s)	346, 381
XmnI	GAANNNNTTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.