Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000378.1

Orthogroup ID

OG0003193

Physical Location & Seq

Genomic Coordinates Forward (+)

89941 .. 107790

Gene Structure 17850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000378.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3273 bp

atgaccattttccgacgaattatactccgaacagctcggacccggccgtcagtcccccaaacccgaaaccctcctccacgtgcttgctcacgtgacctcccaaatccccgccttctctgccaccggtgttttgagcaaccatatcattccagtgcatatgaaattgaggtggtgaaagctgtgccaagccgaggcggtgctggcgggctgtatccggctgttttggctggtttgattggacttggaggtctggaggtggcttatgcagatgctgaggaggctgcttccaagcagggtttgccggctgatgcccctgcgaataacgtggaggaaattgccaagaagcagagacaagaaattgaggacttgctcaagagtaaagggatccaacttggttcttatcccaactttagtgtttctgtcaaggggcaaaaggtagccatcaagttccaaattcctcctgcatgtgaagcttcacaagtgattgcaaatattgcttctaatcttggcttgaaagttgaagagcatggtggtggttcagatatctcattacgcgcttgggacagtggagttgcttggcaactcatgcttatgcacccagagaaacagaaggaaactgaaagtgatcaaggggaattaaaagatgtgaacgaacatgatcgagatctgcacatcctcgttttccgttcagtcattacctcaacagaaaaagctgaaattgaatttatgaagcagggcagcttgagttccaaagagcttgatgctctggtatctgctttacaattagctgggacaaaaaagagcttgatccacgagaaaaaatctaccacagaacgaagagtgagggaagatagcgcacaaacttcatctatagagaaattaataaccagtcttgagtccatgggagtgagagtttatggagttgatgaacccaatatgagttctacaagcaaagatatttcatgggataatcttgctggatatgatctgcaaaagcgacagatagaagacacgatactactggctttgcttagtcctgaaacatatgatgaaattgcccgtggaactcgttgcaaatttgagtcaaacagacctcgagctgtactcttcgaaggcccaccaggtacagggaaaacttcttctgctcgtgtcattgctaatcaagcggccgtcccgatgttatatgttccccttgaggttatcttgtccaagtactatggtgagagtgaacgattattagggaaggtgttttcacttgctaatgaactcccagatggtgctatcatttttctagatgaggttgattcgtttgctatttcgcgagatagtgatatgcatgaagccacacggagagttttatcagttttgctgcgacagattgatggatttgaacaggataagaaagtggttgtaattgctgcaacaaataggaagcaagacctcaacccggccttgatcaggtatattgtcaattcaattatcccatttggcctacctgatcatcaaaatcgtaaggaaatagcagctcagtatgcaaagcatctaactgaaactgaattagatgaattggcaacagtaacagaagagatgtctggaagggatatcagagatgtgtgtcaacaagcagagcggtcgtgggcatcaaagctgatccgaggaaaagtacccaaagacggagaccaaatccatcttccacctctgcaggactacatagcgagtgccatgaatcgacacaagggtttcctcagctccccaccccgacaaacccaaaattccgcatctgacataaagaaggccagggcgacttgcgagactaaccacgcttatgcaaagcaaacgtggctaatgaaaaccatacccgtgcattctcaactctacggacctctctcgaatcaatcaatcccagcgattacaaagcctccccggagcaaaccttcaacctcgttgaaacccgatgaccgccagtcagtcctagtctacttgcgagccgactgtcagcctcacaagatcaacccggcgaccgtacttccagtcccagtctcctcgcgagccgactgccagtactactgccaccgatacatccagcgaagcaaggcgcttgaagaagaagtcaggtcaagggactaccccaacgactgcaccccgcggtgctggcacgcctacgcaatcacacgctcaaaagagactgtttgcacaccagctggagttcagggctgtttgagtgtaaacgcatctggaaatggaggtgaaatcggggaatgtcaggagggaagtggtgaagatagaaatggaggtggtgctcaagggtcgaaaggtaagcgtgggaggccgaaaggatcaaagaacaagaagaagattattggagctgaagagggaattgtagggttgagtggaattgccagtgtcattgtaggtggagaaaagagtgtaacgctgaagaggaagctaggtcgaccaaaaggtgccaagaataaaaagaaggctcttgcaaataatgaaaatgggggtgtgcctaatgggggtgaagaaagtgatagaaggaaagacgttccggttcagatcagctatatcagtctagtcaagaatcgagatcgctcactctttctggtttcacagatagcaatggcttcaaaggacaacaaacccggcaccggacgcatctatacactttccgatctgaaccggagtggattcgatgtggattcgatctttgataaagctagggaattgggagcgttagagggacggtttgattctgcggagcagcccaagactgttgttcataacatcattttctggtccgatggtttcagtgtaaatgatggtcggttgaggcagttggacgatcctaaaaatgcaccattcttagagtgcattcgaaaatctgactgtccaagggagttacagccagaagatagtactgaagttcatatcaatcttataaggcgggacgacgggaaatgcccgctgggtgttggaagaactctaggtagcagctctgcaccagtggcatccccgggcctagttatggatgaaagtttgccaatcacatcaattcagcttaagttagctgatggcacccgcatgattgcacaatttaactaccatcacaccatcagtgacatacacacctttgtcaacacatctaggcccgggagtccgagtaattatcagttgcaggtgatggggttccctcccaaaatcctcaatgatccgactcaaacaatagaacaggcaggtcttgccaattcggttgtgatccagaaattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

AAA

Protein Analysis

1090

Amino Acids

119.77

Weight (kDa)

8.71

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04180 AT4G04180
fragaria_vesca	FvH4_3g01380 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890 FvH4_6g05890
malus_domestica	MD10G1327000.v1.1 MD10G1327200.v1.1
prunus_persica	Prupe.4G014800_v2.0.a1 Prupe.4G015000_v2.0.a1 Prupe.4G015000_v2.0.a1
pyrus_communis	pycom10g27670
rosa_chinensis	RchiOBHm_Chr5g0002011 RchiOBHm_Chr5g0002051
rosa_laevigata	RLG00000025404 RLG00000030988 RLG00000030992
rosa_multiflora	Rmu_sc0000378.1_g000019 Rmu_sc0012328.1_g000001 Rmu_sc0017901.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074350 Rroxscaffold_6G00424700
rosa_rugosa	Rorug04G0394300
rosa_samantha	Rh3DG064500 Rh5AG015500 Rh5AG015700 Rh5AG015800 Rh5BG019100 Rh5CG016800 Rh5CG017100 Rh5DG017400
rosa_wichuraiana	Rw5G001520 Rw5G001540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2942
AarI	CACCTGC	1 cut(s)	3169
AasI	GACNNNNNNGTC	2 cut(s)	46, 246
Acc36I	ACCTGC	2 cut(s)	3169, 3227
AccB1I	GGYRCC	3 cut(s)	2462, 2648, 3077
AccBSI	CCGCTC	1 cut(s)	1630
AccI	GTMKAC	2 cut(s)	1977, 2452
AccII	CGCG	4 cut(s)	555, 1321, 2047, 2146
AclWI	GGATC	8 cut(s)	379, 392, 802, 1645, 2344, 2840, 3206, 3253
AcoI	YGGCCR	2 cut(s)	44, 1167
AcsI	RAATTY	5 cut(s)	453, 722, 1076, 1771, 3266
AcuI	CTGAAG	3 cut(s)	2388, 2456, 2943
AcvI	CACGTG	2 cut(s)	80, 92
AfaI	GTAC	7 cut(s)	1104, 1126, 1214, 1665, 2025, 2063, 2920
AfiI	CCNNNNNNNGG	8 cut(s)	191, 1127, 1447, 1458, 1673, 2519, 2651, 3028
AflII	CTTAAG	1 cut(s)	3062
AgeI	ACCGGT	1 cut(s)	123
AgsI	TTSAA	9 cut(s)	514, 521, 722, 1391, 1476, 1938, 1948, 2102, 2631
AhdI	GACNNNNNGTC	1 cut(s)	1963
AjnI	CCWGG	2 cut(s)	1120, 1796
AjuI	GAANNNNNNNTTGG	2 cut(s)	1674, 1706
Alw21I	GWGCWC	1 cut(s)	2302
Alw26I	GTCTC	5 cut(s)	343, 1671, 1805, 2044, 2177
AlwI	GGATC	8 cut(s)	379, 392, 802, 1645, 2344, 2840, 3206, 3253
AlwNI	CAGNNNCTG	1 cut(s)	272
Ama87I	CYCGRG	3 cut(s)	1095, 3016, 3152
AoxI	GGCC	9 cut(s)	44, 1114, 1167, 1449, 1489, 1794, 2327, 3019, 3149
ApeKI	GCWGC	7 cut(s)	281, 738, 1369, 1418, 1523, 2764, 2994
ApoI	RAATTY	5 cut(s)	453, 722, 1076, 1771, 3266
AseI	ATTAAT	1 cut(s)	881
AsiGI	ACCGGT	1 cut(s)	123
AspLEI	GCGC	3 cut(s)	557, 857, 2098
AspS9I	GGNCC	6 cut(s)	39, 1115, 1880, 2799, 3019, 3150
AsuC2I	CCSGG	9 cut(s)	43, 1448, 1924, 2015, 2646, 3017, 3018, 3153, 3154
AsuHPI	GGTGA	6 cut(s)	184, 1232, 2258, 2288, 2534, 3193
AsuII	TTCGAA	2 cut(s)	1110, 2878
AvaI	CYCGRG	3 cut(s)	1095, 3016, 3152
AvaII	GGWCC	3 cut(s)	39, 1880, 2799
BamHI	GGATCC	1 cut(s)	384
BanI	GGYRCC	3 cut(s)	2462, 2648, 3077
BarI	GAAGNNNNNNTAC	2 cut(s)	999, 1031
BauI	CACGAG	2 cut(s)	812, 1146
BbrPI	CACGTG	2 cut(s)	80, 92
BbsI	GAAGAC	1 cut(s)	1014
Bbv12I	GWGCWC	1 cut(s)	2302
BbvCI	CCTCAGC	2 cut(s)	273, 1745
BbvI	GCAGC	7 cut(s)	268, 750, 1356, 1405, 1535, 2776, 3006
BceAI	ACGGC	2 cut(s)	31, 1154
BcgI	CGANNNNNNTGC	4 cut(s)	1614, 1648, 2037, 2071
BciT130I	CCWGG	2 cut(s)	1122, 1798
BciVI	GTATCC	1 cut(s)	222
BclI	TGATCA	3 cut(s)	625, 1455, 1498
BcnI	CCSGG	9 cut(s)	43, 1448, 1924, 2015, 2646, 3017, 3018, 3153, 3154
BcoDI	GTCTC	5 cut(s)	343, 1671, 1805, 2044, 2177
BfaI	CTAG	9 cut(s)	1292, 1973, 2447, 2576, 2721, 2987, 3023, 3147, 3271
BfmI	CTRYAG	2 cut(s)	870, 1700
BfoI	RGCGCY	1 cut(s)	2099
BfrI	CTTAAG	1 cut(s)	3062
BfuAI	ACCTGC	2 cut(s)	3169, 3227
BfuI	GTATCC	1 cut(s)	222
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	8 cut(s)	282, 739, 1167, 1370, 1419, 1524, 2765, 2995
BlsI	GCNGC	8 cut(s)	283, 740, 1168, 1371, 1420, 1525, 2766, 2996
BmcAI	AGTACT	3 cut(s)	1214, 2063, 2920
Bme18I	GGWCC	3 cut(s)	39, 1880, 2799
BmeRI	GACNNNNNGTC	1 cut(s)	1963
BmeT110I	CYCGRG	3 cut(s)	1095, 3016, 3152
BmgT120I	GGNCC	6 cut(s)	39, 1115, 1880, 2799, 3019, 3150
BmiI	GGNNCC	6 cut(s)	41, 386, 2464, 2650, 3079, 3191
BmrI	ACTGGG	1 cut(s)	2030
BmsI	GCATC	9 cut(s)	259, 298, 751, 1549, 1649, 1787, 2240, 2667, 3020
BmuI	ACTGGG	1 cut(s)	2030
BpiI	GAAGAC	1 cut(s)	1014
BplI	GAGNNNNNCTC	2 cut(s)	1089, 1121
BpmI	CTGGAG	2 cut(s)	272, 2223
Bpu10I	CCTNAGC	2 cut(s)	273, 1745
Bpu14I	TTCGAA	2 cut(s)	1110, 2878
BpuEI	CTTGAG	5 cut(s)	356, 763, 914, 1214, 2286
BpuMI	CCSGG	9 cut(s)	43, 1448, 1924, 2015, 2646, 3017, 3018, 3153, 3154
BsaAI	YACGTR	2 cut(s)	80, 92
BsaBI	GATNNNNATC	1 cut(s)	663
BsaI	GGTCTC	1 cut(s)	1671
BsaWI	WCCGGW	4 cut(s)	123, 2551, 2651, 2682
BsaXI	ACNNNNNCTCC	8 cut(s)	81, 111, 897, 927, 1903, 1933, 3148, 3178
Bsc4I	CCNNNNNNNGG	8 cut(s)	191, 1127, 1447, 1458, 1673, 2519, 2651, 3028
Bse118I	RCCGGY	2 cut(s)	123, 301
Bse1I	ACTGG	9 cut(s)	150, 888, 1026, 1963, 2030, 2036, 2059, 2400, 3005
Bse3DI	GCAATG	2 cut(s)	1152, 2628
Bse8I	GATNNNNATC	1 cut(s)	663
BseBI	CCWGG	2 cut(s)	1122, 1798
BseGI	GGATG	4 cut(s)	672, 2079, 3011, 3037
BseJI	GATNNNNATC	1 cut(s)	663
BseLI	CCNNNNNNNGG	8 cut(s)	191, 1127, 1447, 1458, 1673, 2519, 2651, 3028
BseMI	GCAATG	2 cut(s)	1152, 2628
BseMII	CTCAG	3 cut(s)	264, 1541, 1759
BseNI	ACTGG	9 cut(s)	150, 888, 1026, 1963, 2030, 2036, 2059, 2400, 3005
BseRI	GAGGAG	3 cut(s)	63, 290, 2032
BseX3I	CGGCCG	2 cut(s)	44, 1167
BseXI	GCAGC	7 cut(s)	268, 750, 1356, 1405, 1535, 2776, 3006
BseYI	CCCAGC	3 cut(s)	788, 1903, 2968
BsgI	GTGCAG	3 cut(s)	653, 2122, 2985
Bsh1236I	CGCG	4 cut(s)	555, 1321, 2047, 2146
Bsh1285I	CGRYCG	4 cut(s)	47, 1170, 1634, 2022
BshFI	GGCC	9 cut(s)	46, 1116, 1169, 1451, 1491, 1796, 2329, 3021, 3151
BshNI	GGYRCC	3 cut(s)	2462, 2648, 3077
BshTI	ACCGGT	1 cut(s)	123
BsiEI	CGRYCG	4 cut(s)	47, 1170, 1634, 2022
BsiHKAI	GWGCWC	1 cut(s)	2302
BsiHKCI	CYCGRG	3 cut(s)	1095, 3016, 3152
BslFI	GGGAC	8 cut(s)	38, 575, 805, 1157, 2018, 2135, 2757, 2963
BslI	CCNNNNNNNGG	8 cut(s)	191, 1127, 1447, 1458, 1673, 2519, 2651, 3028
BsmAI	GTCTC	5 cut(s)	343, 1671, 1805, 2044, 2177
BsmFI	GGGAC	8 cut(s)	38, 575, 805, 1157, 2018, 2135, 2757, 2963
BsmI	GAATGC	2 cut(s)	1864, 2874
BsnI	GGCC	9 cut(s)	46, 1116, 1169, 1451, 1491, 1796, 2329, 3021, 3151
Bso31I	GGTCTC	1 cut(s)	1671
BsoBI	CYCGRG	3 cut(s)	1095, 3016, 3152
Bsp119I	TTCGAA	2 cut(s)	1110, 2878
Bsp1286I	GDGCHC	1 cut(s)	2302
Bsp19I	CCATGG	1 cut(s)	900
Bsp68I	TCGCGA	2 cut(s)	1321, 2047
BspANI	GGCC	9 cut(s)	46, 1116, 1169, 1451, 1491, 1796, 2329, 3021, 3151
BspCNI	CTCAG	3 cut(s)	265, 1540, 1758
BspFNI	CGCG	4 cut(s)	555, 1321, 2047, 2146
BspLI	GGNNCC	6 cut(s)	41, 386, 2464, 2650, 3079, 3191
BspMAI	CTGCAG	1 cut(s)	1704
BspMI	ACCTGC	2 cut(s)	3169, 3227
BspPI	GGATC	8 cut(s)	379, 392, 802, 1645, 2344, 2840, 3206, 3253
BspQI	GCTCTTC	1 cut(s)	516
BspT104I	TTCGAA	2 cut(s)	1110, 2878
BspT107I	GGYRCC	3 cut(s)	2462, 2648, 3077
BspTI	CTTAAG	1 cut(s)	3062
BspTNI	GGTCTC	1 cut(s)	1671
BsrBI	CCGCTC	1 cut(s)	1630
BsrDI	GCAATG	2 cut(s)	1152, 2628
BsrFI	RCCGGY	2 cut(s)	123, 301
BsrI	ACTGG	9 cut(s)	150, 888, 1026, 1963, 2030, 2036, 2059, 2400, 3005
BssAI	RCCGGY	2 cut(s)	123, 301
BssSI	CACGAG	2 cut(s)	812, 1146
BssT1I	CCWWGG	2 cut(s)	900, 2894
Bst2BI	CACGAG	2 cut(s)	812, 1146
Bst2UI	CCWGG	2 cut(s)	1122, 1798
Bst4CI	ACNGT	8 cut(s)	566, 1576, 1994, 2023, 2188, 2748, 2776, 2891
Bst6I	CTCTTC	6 cut(s)	516, 832, 1112, 1578, 2364, 2432
BstAFI	CTTAAG	1 cut(s)	3062
BstAPI	GCANNNNNTGC	4 cut(s)	298, 494, 586, 3242
BstBAI	YACGTR	2 cut(s)	80, 92
BstBI	TTCGAA	2 cut(s)	1110, 2878
BstC8I	GCNNGC	9 cut(s)	85, 202, 206, 303, 1986, 2049, 2153, 2157, 2966
BstDEI	CTNAG	5 cut(s)	273, 1031, 1527, 1745, 2866
BstDSI	CCRYGG	3 cut(s)	900, 1060, 2144
BstENI	CCTNNNNNAGG	1 cut(s)	1456
BstF5I	GGATG	4 cut(s)	672, 2079, 3011, 3037
BstFNI	CGCG	4 cut(s)	555, 1321, 2047, 2146
BstH2I	RGCGCY	1 cut(s)	2099
BstHHI	GCGC	3 cut(s)	557, 857, 2098
BstMAI	GTCTC	5 cut(s)	343, 1671, 1805, 2044, 2177
BstMCI	CGRYCG	4 cut(s)	47, 1170, 1634, 2022
BstNI	CCWGG	2 cut(s)	1122, 1798
BstNSI	RCATGY	1 cut(s)	468
BstSFI	CTRYAG	2 cut(s)	870, 1700
BstUI	CGCG	4 cut(s)	555, 1321, 2047, 2146
BstV1I	GCAGC	7 cut(s)	268, 750, 1356, 1405, 1535, 2776, 3006
BstV2I	GAAGAC	1 cut(s)	1014
BstX2I	RGATCY	2 cut(s)	384, 664
BstYI	RGATCY	2 cut(s)	384, 664
BstZI	CGGCCG	2 cut(s)	44, 1167
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	9 cut(s)	46, 1116, 1169, 1451, 1491, 1796, 2329, 3021, 3151
BtgI	CCRYGG	3 cut(s)	900, 1060, 2144
BtsCI	GGATG	4 cut(s)	672, 2079, 3011, 3037
BtsIMutI	CAGTG	6 cut(s)	157, 571, 2407, 2818, 3012, 3124
BtuMI	TCGCGA	2 cut(s)	1321, 2047
BveI	ACCTGC	2 cut(s)	3169, 3227
Cac8I	GCNNGC	9 cut(s)	85, 202, 206, 303, 1986, 2049, 2153, 2157, 2966
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	3 cut(s)	557, 857, 2098
Cfr10I	RCCGGY	2 cut(s)	123, 301
Cfr13I	GGNCC	6 cut(s)	39, 1115, 1880, 2799, 3019, 3150
Cfr42I	CCGCGG	1 cut(s)	2147
Cfr9I	CCCGGG	2 cut(s)	3016, 3152
CseI	GACGC	1 cut(s)	2664
CsiI	ACCWGGT	1 cut(s)	1120
Csp6I	GTAC	7 cut(s)	1103, 1125, 1213, 1664, 2024, 2062, 2919
CspAI	ACCGGT	1 cut(s)	123
CviAII	CATG	9 cut(s)	465, 527, 586, 656, 901, 963, 1337, 1723, 3085
CviQI	GTAC	7 cut(s)	1103, 1125, 1213, 1664, 2024, 2062, 2919
DdeI	CTNAG	5 cut(s)	273, 1031, 1527, 1745, 2866
DrdI	GACNNNNNNGTC	2 cut(s)	46, 246
DriI	GACNNNNNGTC	1 cut(s)	1963
DseDI	GACNNNNNNGTC	2 cut(s)	46, 246
EaeI	YGGCCR	2 cut(s)	44, 1167
EagI	CGGCCG	2 cut(s)	44, 1167
Eam1104I	CTCTTC	6 cut(s)	516, 832, 1112, 1578, 2364, 2432
Eam1105I	GACNNNNNGTC	1 cut(s)	1963
EarI	CTCTTC	6 cut(s)	516, 832, 1112, 1578, 2364, 2432
EclXI	CGGCCG	2 cut(s)	44, 1167
Eco130I	CCWWGG	2 cut(s)	900, 2894
Eco31I	GGTCTC	1 cut(s)	1671
Eco32I	GATATC	2 cut(s)	544, 1603
Eco47I	GGWCC	3 cut(s)	39, 1880, 2799
Eco52I	CGGCCG	2 cut(s)	44, 1167
Eco57I	CTGAAG	3 cut(s)	2388, 2456, 2943
Eco72I	CACGTG	2 cut(s)	80, 92
Eco88I	CYCGRG	3 cut(s)	1095, 3016, 3152
EcoNI	CCTNNNNNAGG	1 cut(s)	1456
EcoRII	CCWGG	2 cut(s)	1120, 1796
EcoRV	GATATC	2 cut(s)	544, 1603
EcoT14I	CCWWGG	2 cut(s)	900, 2894
EcoT22I	ATGCAT	1 cut(s)	1338
ErhI	CCWWGG	2 cut(s)	900, 2894
FaeI	CATG	9 cut(s)	468, 530, 589, 659, 904, 966, 1340, 1726, 3088
FaqI	GGGAC	8 cut(s)	38, 575, 805, 1157, 2018, 2135, 2757, 2963
FatI	CATG	9 cut(s)	464, 526, 585, 655, 900, 962, 1336, 1722, 3084
FauI	CCCGC	6 cut(s)	116, 197, 2151, 2940, 2973, 3089
FauNDI	CATATG	2 cut(s)	157, 1045
FbaI	TGATCA	3 cut(s)	625, 1455, 1498
FblI	GTMKAC	2 cut(s)	1977, 2452
Fnu4HI	GCNGC	8 cut(s)	282, 739, 1167, 1370, 1419, 1524, 2765, 2995
FokI	GGATG	4 cut(s)	659, 2066, 2998, 3044
Fsp4HI	GCNGC	8 cut(s)	282, 739, 1167, 1370, 1419, 1524, 2765, 2995
FspBI	CTAG	9 cut(s)	1292, 1973, 2447, 2576, 2721, 2987, 3023, 3147, 3271
GlaI	GCGC	3 cut(s)	556, 856, 2097
GluI	GCNGC	8 cut(s)	282, 739, 1167, 1370, 1419, 1524, 2765, 2995
GsaI	CCCAGC	3 cut(s)	792, 1907, 2972
GsuI	CTGGAG	2 cut(s)	272, 2223
HaeII	RGCGCY	1 cut(s)	2099
HaeIII	GGCC	9 cut(s)	46, 1116, 1169, 1451, 1491, 1796, 2329, 3021, 3151
HgaI	GACGC	1 cut(s)	2664
HhaI	GCGC	3 cut(s)	557, 857, 2098
Hin1II	CATG	9 cut(s)	468, 530, 589, 659, 904, 966, 1340, 1726, 3088
Hin6I	GCGC	3 cut(s)	555, 855, 2096
HinP1I	GCGC	3 cut(s)	555, 855, 2096
HincII	GTYRAC	3 cut(s)	1619, 2453, 3139
HindII	GTYRAC	3 cut(s)	1619, 2453, 3139
HindIII	AAGCTT	1 cut(s)	471
HphI	GGTGA	6 cut(s)	184, 1232, 2258, 2288, 2534, 3193
Hpy166II	GTNNAC	7 cut(s)	649, 1229, 1619, 1978, 2227, 2453, 3139
Hpy8I	GTNNAC	7 cut(s)	649, 1229, 1619, 1978, 2227, 2453, 3139
Hpy99I	CGWCG	2 cut(s)	18, 2957
HpyAV	CCTTC	9 cut(s)	122, 604, 1106, 1237, 1590, 1786, 1944, 2473, 2532
HpyCH4III	ACNGT	8 cut(s)	566, 1576, 1994, 2023, 2188, 2748, 2776, 2891
HpyCH4IV	ACGT	5 cut(s)	79, 91, 324, 1838, 2547
HpyF3I	CTNAG	5 cut(s)	273, 1031, 1527, 1745, 2866
HpySE526I	ACGT	5 cut(s)	79, 91, 324, 1838, 2547
Hsp92II	CATG	9 cut(s)	468, 530, 589, 659, 904, 966, 1340, 1726, 3088
HspAI	GCGC	3 cut(s)	555, 855, 2096
KroI	GCCGGC	1 cut(s)	301
KroNI	GCCGGC	1 cut(s)	303
Ksp22I	TGATCA	3 cut(s)	625, 1455, 1498
KspI	CCGCGG	1 cut(s)	2147
LguI	GCTCTTC	1 cut(s)	516
LmnI	GCTCC	5 cut(s)	1754, 1926, 2363, 2732, 2761
Lsp1109I	GCAGC	7 cut(s)	268, 750, 1356, 1405, 1535, 2776, 3006
LweI	GCATC	9 cut(s)	259, 298, 751, 1549, 1649, 1787, 2240, 2667, 3020
MabI	ACCWGGT	1 cut(s)	1120
MaeI	CTAG	9 cut(s)	1292, 1973, 2447, 2576, 2721, 2987, 3023, 3147, 3271
MaeII	ACGT	5 cut(s)	79, 91, 324, 1838, 2547
MaeIII	GTNAC	5 cut(s)	92, 1576, 2428, 2901, 3119
MbiI	CCGCTC	1 cut(s)	1630
MflI	RGATCY	2 cut(s)	384, 664
MhlI	GDGCHC	1 cut(s)	2302
MlyI	GAGTC	4 cut(s)	905, 1091, 3166, 3211
MmeI	TCCRAC	5 cut(s)	37, 412, 2820, 2956, 3239
Mph1103I	ATGCAT	1 cut(s)	1338
MroNI	GCCGGC	1 cut(s)	301
MseI	TTAA	4 cut(s)	638, 881, 3063, 3099
MslI	CAYNNNNRTG	7 cut(s)	150, 531, 590, 905, 1824, 1859, 3083
MspA1I	CMGCKG	3 cut(s)	2146, 2201, 2968
MspCI	CTTAAG	1 cut(s)	3062
Mva1269I	GAATGC	2 cut(s)	1864, 2874
MvaI	CCWGG	2 cut(s)	1122, 1798
MvnI	CGCG	4 cut(s)	555, 1321, 2047, 2146
NaeI	GCCGGC	1 cut(s)	303
NciI	CCSGG	9 cut(s)	43, 1448, 1924, 2015, 2646, 3017, 3018, 3153, 3154
NcoI	CCATGG	1 cut(s)	900
NdeI	CATATG	2 cut(s)	157, 1045
NgoMIV	GCCGGC	1 cut(s)	301
NlaIII	CATG	9 cut(s)	468, 530, 589, 659, 904, 966, 1340, 1726, 3088
NlaIV	GGNNCC	6 cut(s)	41, 386, 2464, 2650, 3079, 3191
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	2 cut(s)	92, 3119
NruI	TCGCGA	2 cut(s)	1321, 2047
NsiI	ATGCAT	1 cut(s)	1338
NspI	RCATGY	1 cut(s)	468
NspV	TTCGAA	2 cut(s)	1110, 2878
PaeR7I	CTCGAG	1 cut(s)	1095
PaqCI	CACCTGC	1 cut(s)	3169
PciSI	GCTCTTC	1 cut(s)	516
PctI	GAATGC	2 cut(s)	1864, 2874
PdiI	GCCGGC	1 cut(s)	303
PfeI	GAWTC	7 cut(s)	1304, 1726, 1891, 2584, 2691, 2702, 2753
PinAI	ACCGGT	1 cut(s)	123
PkrI	GCNGC	8 cut(s)	283, 740, 1168, 1371, 1420, 1525, 2766, 2996
PleI	GAGTC	4 cut(s)	904, 1090, 3165, 3211
PmaCI	CACGTG	2 cut(s)	80, 92
PmlI	CACGTG	2 cut(s)	80, 92
PpsI	GAGTC	4 cut(s)	904, 1090, 3165, 3211
Ppu21I	YACGTR	2 cut(s)	80, 92
PshBI	ATTAAT	1 cut(s)	881
PsiI	TTATAA	1 cut(s)	2942
Psp6I	CCWGG	2 cut(s)	1120, 1796
PspCI	CACGTG	2 cut(s)	80, 92
PspFI	CCCAGC	3 cut(s)	788, 1903, 2968
PspGI	CCWGG	2 cut(s)	1120, 1796
PspN4I	GGNNCC	6 cut(s)	41, 386, 2464, 2650, 3079, 3191
PspPI	GGNCC	6 cut(s)	39, 1115, 1880, 2799, 3019, 3150
PspXI	VCTCGAGB	1 cut(s)	1095
PstI	CTGCAG	1 cut(s)	1704
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	2 cut(s)	384, 664
PvuII	CAGCTG	1 cut(s)	2201
RruI	TCGCGA	2 cut(s)	1321, 2047
RsaI	GTAC	7 cut(s)	1104, 1126, 1214, 1665, 2025, 2063, 2920
RsaNI	GTAC	7 cut(s)	1103, 1125, 1213, 1664, 2024, 2062, 2919
RseI	CAYNNNNRTG	7 cut(s)	150, 531, 590, 905, 1824, 1859, 3083
SacII	CCGCGG	1 cut(s)	2147
SalI	GTCGAC	1 cut(s)	2451
SapI	GCTCTTC	1 cut(s)	516
SaqAI	TTAA	4 cut(s)	638, 881, 3063, 3099
SatI	GCNGC	8 cut(s)	282, 739, 1167, 1370, 1419, 1524, 2765, 2995
Sau96I	GGNCC	6 cut(s)	39, 1115, 1880, 2799, 3019, 3150
ScaI	AGTACT	3 cut(s)	1214, 2063, 2920
SchI	GAGTC	4 cut(s)	905, 1091, 3166, 3211
SduI	GDGCHC	1 cut(s)	2302
SexAI	ACCWGGT	1 cut(s)	1120
SfaNI	GCATC	9 cut(s)	259, 298, 751, 1549, 1649, 1787, 2240, 2667, 3020
SfcI	CTRYAG	2 cut(s)	870, 1700
Sfr274I	CTCGAG	1 cut(s)	1095
Sfr303I	CCGCGG	1 cut(s)	2147
SfuI	TTCGAA	2 cut(s)	1110, 2878
SgrAI	CRCCGGYG	1 cut(s)	123
SgrBI	CCGCGG	1 cut(s)	2147
SinI	GGWCC	3 cut(s)	39, 1880, 2799
SlaI	CTCGAG	1 cut(s)	1095
SmaI	CCCGGG	2 cut(s)	3018, 3154
SmiMI	CAYNNNNRTG	7 cut(s)	150, 531, 590, 905, 1824, 1859, 3083
SmlI	CTYRAG	7 cut(s)	371, 742, 893, 1095, 1193, 2301, 3062
SmoI	CTYRAG	7 cut(s)	371, 742, 893, 1095, 1193, 2301, 3062
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	9 cut(s)	1292, 1973, 2447, 2576, 2721, 2987, 3023, 3147, 3271
StyI	CCWWGG	2 cut(s)	900, 2894
TaaI	ACNGT	8 cut(s)	566, 1576, 1994, 2023, 2188, 2748, 2776, 2891
TaiI	ACGT	5 cut(s)	82, 94, 327, 1841, 2550
TatI	WGTACW	4 cut(s)	1102, 1212, 2061, 2918
TauI	GCSGC	1 cut(s)	1169
TfiI	GAWTC	7 cut(s)	1304, 1726, 1891, 2584, 2691, 2702, 2753
Tru1I	TTAA	4 cut(s)	638, 881, 3063, 3099
Tru9I	TTAA	4 cut(s)	638, 881, 3063, 3099
TscAI	CASTG	6 cut(s)	157, 571, 2407, 2818, 3012, 3124
TseFI	GTSAC	2 cut(s)	92, 3119
TseI	GCWGC	7 cut(s)	281, 738, 1369, 1418, 1523, 2764, 2994
Tsp45I	GTSAC	2 cut(s)	92, 3119
TspGWI	ACGGA	4 cut(s)	674, 1363, 1689, 1893
TspMI	CCCGGG	2 cut(s)	3016, 3152
TspRI	CASTG	6 cut(s)	157, 571, 2407, 2818, 3012, 3124
Vha464I	CTTAAG	1 cut(s)	3062
VpaK11BI	GGWCC	3 cut(s)	39, 1880, 2799
VspI	ATTAAT	1 cut(s)	881
XagI	CCTNNNNNAGG	1 cut(s)	1456
XapI	RAATTY	5 cut(s)	453, 722, 1076, 1771, 3266
XbaI	TCTAGA	1 cut(s)	1291
XceI	RCATGY	1 cut(s)	468
XhoI	CTCGAG	1 cut(s)	1095
XmaI	CCCGGG	2 cut(s)	3016, 3152
XmiI	GTMKAC	2 cut(s)	1977, 2452
XspI	CTAG	9 cut(s)	1292, 1973, 2447, 2576, 2721, 2987, 3023, 3147, 3271
ZrmI	AGTACT	3 cut(s)	1214, 2063, 2920
Zsp2I	ATGCAT	1 cut(s)	1338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.