Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008855

Physical Location & Seq

Genomic Coordinates Reverse (-)

11504309 .. 11508551

Gene Structure 4243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1124900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTTCTGATGAAGGAATTTCGTATTGTCATGCCCGTGTCATTGGAAGAGTATCAAGTAGCCCAGACGTACATGGTCATGAAGATGCAGAAACAGAACACGACCAGTACCGAAGGGGTGGAAATAGTAGAGAGTAGACCCTTTGAAGATGATGTATTTGGAAAGGGTCACTACAGTTCTAAAATTTATCGTCTACAAAGCAAAGCTCCTGGTTGGCTTACCACTTTTGCACCAGCAGAAGCTCTCATCATGCAAGAGGAAGCCTGGAACGCATACCCAAGATGCAAAACAGTAATCAAGTGCCCATACTTCACCAAGTTTCAGCTGACCGTCGAAACTGTTCACAGAGCTGACAAGGGCGATTCGGATAATGTTCACGGTCTAAGCAAAGCACAATTAGCAACTAGGGATGTGGAAATTGTTGATATTGCTTCATCAGCAAGAGATTACTGGAGTTACATAGTTGGCACTAACAACACGGACTTATCCCAATTTACATCAGCGAAAACTGGACGTGGTCCACTTTTAGAGGGATGGCAGGATAAGTCAGATCCAGTTATGACAGCCTACAAACTGGTCACCATTGATGCACCATATTGGGGTTTTGGCAATAAACTTGAACAAGCTTTGCTATTGGGTGAAAGGGCTCTTTTCCTAGAAAGCCATCGGAATTGTTTTTCTTGGATCGATGAATGGTTTGGAATGACAGTTGAACAGATACATGAAAGTGAACGACATAGAAACTCCGAGACCCAGGAACTTGGGAGGCCAATTTTGGTGAAGAGTCTAGAAGATTTTGACCAGAGATTATTACCTGAAAGTGAAGAAATTTATAGCGGGCAGAGAACTCAACTTTCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0008526 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IP_trans

Protein Analysis

288

Amino Acids

32.9

Weight (kDa)

5.21

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IP_trans	PF02121	2 - 246	1.5e-90	Phosphatidylinositol transfer protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33520 FvH4_3g33520
malus_domestica	MD03G1111000.v1.1 MD11G1124900.v1.1
prunus_persica	Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1 Prupe.6G093600_v2.0.a1
pyrus_communis	pycom11g10540
rosa_chinensis	RchiOBHm_Chr5g0060991
rosa_laevigata	RLG00000035418
rosa_multiflora	Rmu_sc0000640.1_g000013
rosa_roxburghii	Rroxscaffold_1G00019660
rosa_rugosa	Rorug05G0335500 Rorug05G0335600 Rorug05G0335700
rosa_samantha	Rh5AG398200 Rh5BG411100 Rh5CG436100 Rh5DG425500
rosa_wichuraiana	Rw5G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	136, 193
AciI	CCGC	1 cut(s)	837
AclWI	GGATC	2 cut(s)	545, 692
AcsI	RAATTY	3 cut(s)	17, 183, 828
AfaI	GTAC	2 cut(s)	71, 109
AfiI	CCNNNNNNNGG	1 cut(s)	599
AgsI	TTSAA	3 cut(s)	146, 620, 713
AjiI	CACGTC	1 cut(s)	515
AjnI	CCWGG	3 cut(s)	208, 263, 753
AluBI	AGCT	6 cut(s)	206, 242, 325, 350, 626, 860
AluI	AGCT	6 cut(s)	206, 242, 325, 350, 626, 860
Alw26I	GTCTC	1 cut(s)	743
AlwI	GGATC	2 cut(s)	545, 692
AoxI	GGCC	1 cut(s)	767
ApoI	RAATTY	3 cut(s)	17, 183, 828
Asp700I	GAANNNNTTC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	518
AsuHPI	GGTGA	4 cut(s)	304, 571, 650, 790
AvaII	GGWCC	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	649
BccI	CCATC	2 cut(s)	528, 672
BciT130I	CCWGG	3 cut(s)	210, 265, 755
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	3 cut(s)	405, 656, 788
BfmI	CTRYAG	1 cut(s)	172
Bme1390I	CCNGG	3 cut(s)	210, 265, 755
Bme18I	GGWCC	1 cut(s)	518
BmgBI	CACGTC	1 cut(s)	515
BmgT120I	GGNCC	1 cut(s)	518
BmrFI	CCNGG	3 cut(s)	210, 265, 755
BmsI	GCATC	3 cut(s)	75, 272, 577
BpmI	CTGGAG	1 cut(s)	472
Bsa29I	ATCGAT	1 cut(s)	687
BsaI	GGTCTC	1 cut(s)	743
BsaJI	CCNNGG	1 cut(s)	753
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse1I	ACTGG	5 cut(s)	105, 455, 514, 554, 579
BseBI	CCWGG	3 cut(s)	210, 265, 755
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	753
BseGI	GGATG	2 cut(s)	415, 539
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseNI	ACTGG	5 cut(s)	105, 455, 514, 554, 579
BseSI	GKGCMC	1 cut(s)	305
BshFI	GGCC	1 cut(s)	769
BshVI	ATCGAT	1 cut(s)	687
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	1 cut(s)	743
BsnI	GGCC	1 cut(s)	769
Bso31I	GGTCTC	1 cut(s)	743
Bsp1286I	GDGCHC	2 cut(s)	305, 649
Bsp143I	GATC	2 cut(s)	550, 684
BspACI	CCGC	1 cut(s)	837
BspANI	GGCC	1 cut(s)	769
BspDI	ATCGAT	1 cut(s)	687
BspHI	TCATGA	1 cut(s)	78
BspPI	GGATC	2 cut(s)	545, 692
BspTNI	GGTCTC	1 cut(s)	743
BsrI	ACTGG	5 cut(s)	105, 455, 514, 554, 579
BssECI	CCNNGG	1 cut(s)	753
BssMI	GATC	2 cut(s)	550, 684
Bst2UI	CCWGG	3 cut(s)	210, 265, 755
Bst4CI	ACNGT	6 cut(s)	176, 292, 331, 340, 380, 709
Bst6I	CTCTTC	2 cut(s)	42, 776
BstC8I	GCNNGC	1 cut(s)	839
BstDEI	CTNAG	1 cut(s)	383
BstEII	GGTNACC	1 cut(s)	577
BstF5I	GGATG	2 cut(s)	415, 539
BstKTI	GATC	2 cut(s)	553, 687
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	2 cut(s)	550, 684
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 398, 437
BstNI	CCWGG	3 cut(s)	210, 265, 755
BstPI	GGTNACC	1 cut(s)	577
BstSCI	CCNGG	3 cut(s)	208, 263, 753
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	761
BstYI	RGATCY	1 cut(s)	550
Bsu15I	ATCGAT	1 cut(s)	687
BsuRI	GGCC	1 cut(s)	769
BsuTUI	ATCGAT	1 cut(s)	687
BtrI	CACGTC	1 cut(s)	515
BtsCI	GGATG	2 cut(s)	415, 539
Cac8I	GCNNGC	1 cut(s)	839
CciI	TCATGA	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	518
ClaI	ATCGAT	1 cut(s)	687
Csp6I	GTAC	2 cut(s)	70, 108
CviAII	CATG	5 cut(s)	31, 73, 79, 250, 722
CviQI	GTAC	2 cut(s)	70, 108
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	2 cut(s)	552, 686
DpnII	GATC	2 cut(s)	550, 684
Eam1104I	CTCTTC	2 cut(s)	42, 776
EarI	CTCTTC	2 cut(s)	42, 776
Eco24I	GRGCYC	1 cut(s)	649
Eco31I	GGTCTC	1 cut(s)	743
Eco47I	GGWCC	1 cut(s)	518
Eco91I	GGTNACC	1 cut(s)	577
EcoO65I	GGTNACC	1 cut(s)	577
EcoRII	CCWGG	3 cut(s)	208, 263, 753
EcoT38I	GRGCYC	1 cut(s)	649
FaeI	CATG	5 cut(s)	34, 76, 82, 253, 725
FatI	CATG	5 cut(s)	30, 72, 78, 249, 721
FauI	CCCGC	1 cut(s)	830
FblI	GTMKAC	2 cut(s)	136, 193
FokI	GGATG	2 cut(s)	422, 546
FriOI	GRGCYC	1 cut(s)	649
FspBI	CTAG	3 cut(s)	405, 656, 788
GsuI	CTGGAG	1 cut(s)	472
HaeIII	GGCC	1 cut(s)	769
Hin1II	CATG	5 cut(s)	34, 76, 82, 253, 725
HindIII	AAGCTT	1 cut(s)	624
HinfI	GANTC	2 cut(s)	362, 784
HphI	GGTGA	4 cut(s)	304, 571, 650, 790
Hpy166II	GTNNAC	6 cut(s)	137, 194, 343, 376, 521, 731
Hpy188I	TCNGA	5 cut(s)	9, 367, 550, 669, 748
Hpy188III	TCNNGA	2 cut(s)	79, 788
Hpy8I	GTNNAC	6 cut(s)	137, 194, 343, 376, 521, 731
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	2 cut(s)	7, 107
HpyCH4III	ACNGT	6 cut(s)	176, 292, 331, 340, 380, 709
HpyCH4IV	ACGT	2 cut(s)	68, 514
HpyCH4V	TGCA	5 cut(s)	88, 230, 253, 285, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 398, 437
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	2 cut(s)	68, 514
Hsp92II	CATG	5 cut(s)	34, 76, 82, 253, 725
Kzo9I	GATC	2 cut(s)	550, 684
LmnI	GCTCC	1 cut(s)	211
LweI	GCATC	3 cut(s)	75, 272, 577
MaeI	CTAG	3 cut(s)	405, 656, 788
MaeII	ACGT	2 cut(s)	68, 514
MaeIII	GTNAC	3 cut(s)	167, 455, 577
MalI	GATC	2 cut(s)	552, 686
MboI	GATC	2 cut(s)	550, 684
MboII	GAAGA	6 cut(s)	59, 94, 158, 793, 803, 836
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	2 cut(s)	305, 649
MluCI	AATT	8 cut(s)	17, 183, 395, 417, 491, 670, 771, 828
MlyI	GAGTC	1 cut(s)	793
MnlI	CCTC	3 cut(s)	250, 523, 759
MroXI	GAANNNNTTC	1 cut(s)	339
MseI	TTAA	1 cut(s)	862
MslI	CAYNNNNRTG	4 cut(s)	35, 77, 83, 726
MspA1I	CMGCKG	1 cut(s)	325
MspR9I	CCNGG	3 cut(s)	210, 265, 755
MvaI	CCWGG	3 cut(s)	210, 265, 755
MwoI	GCNNNNNNNGC	3 cut(s)	269, 398, 437
NdeII	GATC	2 cut(s)	550, 684
NlaIII	CATG	5 cut(s)	34, 76, 82, 253, 725
NmuCI	GTSAC	2 cut(s)	167, 577
PagI	TCATGA	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	362
PflFI	GACNNNGTC	1 cut(s)	516
PleI	GAGTC	1 cut(s)	792
PpsI	GAGTC	1 cut(s)	792
Psp6I	CCWGG	3 cut(s)	208, 263, 753
PspEI	GGTNACC	1 cut(s)	577
PspGI	CCWGG	3 cut(s)	208, 263, 753
PspPI	GGNCC	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	550
PsyI	GACNNNGTC	1 cut(s)	516
PvuII	CAGCTG	1 cut(s)	325
RsaI	GTAC	2 cut(s)	71, 109
RsaNI	GTAC	2 cut(s)	70, 108
RseI	CAYNNNNRTG	4 cut(s)	35, 77, 83, 726
SaqAI	TTAA	1 cut(s)	862
Sau3AI	GATC	2 cut(s)	550, 684
Sau96I	GGNCC	1 cut(s)	518
SchI	GAGTC	1 cut(s)	793
ScrFI	CCNGG	3 cut(s)	210, 265, 755
SduI	GDGCHC	2 cut(s)	305, 649
SetI	ASST	9 cut(s)	71, 208, 244, 327, 352, 517, 628, 817, 862
SfaNI	GCATC	3 cut(s)	75, 272, 577
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	4 cut(s)	35, 77, 83, 726
Sse9I	AATT	8 cut(s)	17, 183, 395, 417, 491, 670, 771, 828
SsiI	CCGC	1 cut(s)	837
SspMI	CTAG	3 cut(s)	405, 656, 788
StyD4I	CCNGG	3 cut(s)	208, 263, 753
TaaI	ACNGT	6 cut(s)	176, 292, 331, 340, 380, 709
TaiI	ACGT	2 cut(s)	71, 517
TaqI	TCGA	2 cut(s)	333, 687
TasI	AATT	8 cut(s)	17, 183, 395, 417, 491, 670, 771, 828
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	862
Tru9I	TTAA	1 cut(s)	862
TseFI	GTSAC	2 cut(s)	167, 577
Tsp45I	GTSAC	2 cut(s)	167, 577
TspDTI	ATGAA	5 cut(s)	26, 95, 423, 705, 738
TspGWI	ACGGA	1 cut(s)	494
Tth111I	GACNNNGTC	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	3 cut(s)	17, 183, 828
XbaI	TCTAGA	1 cut(s)	787
XmiI	GTMKAC	2 cut(s)	136, 193
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	3 cut(s)	405, 656, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.